Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0640700 | OGI:01079380 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:25748192-25750473 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGACACATCAAGCTTCTTTAATCATGAAACAGTGTAACATATTTTAATCATGAAACAGTGTAACATATTTTATCCTATATTTTATTAGTCGTGTGTGTGCAAATGAATTCCTGATCATGACCCTAGACAGAGAACATATGTGTATATGTGCCACAAAAATTTACACGATGGAAACTAAGTACTCCACATCCCCAAATCAGCTTGAGAGATGGCCGTACGTATCATATCATGCTGAAGAGATTGGCCGTGGAGATGAGAGAGTTGGTGGCGAGTCCGATGAACGCGATGAAGGAAAACCACACCGCGCTGTTGATCTTCTTGTTGAACGGATCCTTGCCGAAGCTCGACATCCACAGATCGTTGCGGGACGCTGCCGCCGACGAGGCCGACATGAGGAGATACGCCAACACCTGCAGCGAGACCAGGAAGATCAGATGGTCAGACACCGGAAACACCTCTGCTTTCCCTGCTTTGGAATGGCGCATTTCAGGTGAAGGATGAGAGGCTGGGGCTTTGCCTGATCCAGGAAGAGGCTGAAGTAGTAGCTCGAGGTGCTCCGGAAAAGAAACCTCGGCGAAACCAGGCGGCGAATCTCGCCGAACGCTTGCGCGATCGAGTAGATGCAGACGACGATGTTCACTCCGACGGCGTACCTGCAAGTTTTAGTGTTGTTCAATGGGGAGAAGAGAAAGTTATTAAACCACCAAAAGATGAAGCTATGTTCCTCTGTTTAGTGTAGAGTTGAGCTAGTTTAGAAATTCAGAGAAAACCGTTTGATTATTGTCTTAACCTAAAACTGAAATTGTGTTCTACCTCTAAGCGACCTGAATCAAAACAAGTATCTCTGCATTCACGAGGTGTTTAAATTTTCTTAATCTTCACTCGCAAGTTCTATTTGTACAACAATATTTTTTTTTCAAAAATCGGTGCACAACATACGTAACATCAACGGATCAACCACGATAAAATCTGAATTTCAAGCAGAGCACGTGAAATACTACTCTGTACTATTGAACAAGAGTACAGAATATAGCTTCCCAGAACCAGTATCCACGTTTGTATACAGCAAAATGACAAAAACCAATGGGGAACAGTAACGAAAATTCTCGAACAATCAATTTAGTAAGAACGACTATAATTTCAATTAACCCCCATAATTGCAAGACAGAAAAATAAATCCAACTCCCAAGAAGTCAGATACTAACTACTCCTACAAGTACCAACTCCCGTAACCGTCAAAACCCGGACAAATCCGACTAAAACGTGACAAACAAAAGAGAAAAAAAAAACGAGCATCTAGGCAAAAGTGGTCGCTAACCTGTACTGCTCGTAGCGGCCGTAGTGGTCGCCGGCCCAGCCGGACGTCCGCGCGCTGACCATGAGCGCGAAGGACACCAGGCTGAGCACCGCCGTGGCCACTCGCAGCGCCACCGACGTCGTCCTCCTCTCCCCGACGGCGGCCACGGCCGCCACCTCTGGCGGCACGTCCCCTCCGTTCTCCGCCGCCCCTGCCACGGGCCCGTGCTGGTGGTCGAGCCGCGCGGCCTTGCCGTTGCCGATCCGCAGAGGCGACGTCATGGCCTCCTCGGCCGGGTTGAACGGTATCGCGATCGCCGTCGCGACGGGCGTGGCCGGCGGCTTCAACGCCTCCTTGTGCTTCGGCGTGTTCTGCCCGCTCTTGCTTTTGGCCGTGGGCGTGGGTGCGGGCGCGGTGGTGGCGGGCGCTGGAGTCAGCGGTGACGGCGGCGTAGGCGACGGCGAGGGCGACGACATGGCGAGGGACCCCTGCGACGGCGTCCGGAAGAGGCGGCCCGTCGCGAGGTGAAGTTGCGGGCGTCCCGGACGGCGGCCTTGCGCCGTCCCGGCGGCGCCATCTTCACCGTTGACGGCGGGAGAGCCCGGCGCAGGCGGGAGCAACCGGTGGGGCGAGGGCGACACCTGGAGCCGCACCGGCGAGAGCTGCGGGCTCTTGGCGGCGGCCTCCGATCCCCCGTTGACGTCGACGACGCCCTCCTGATGAGGCACCAGCGCCTCGTCACGCGCCTCGTCCAGCGACGGCGGCGGCGTGTGGTACTCCTCGCGCGGCGTCGAAGGCGCCGACTCCGGAAACAACAGCGGCGTCGGCGGATCGGGCGCGGGAGGCGGCGACGGCGACGCCTGCGGCGTCTCGGGCTCGGGCTGGGGCTCTGGCACGGGAACGCGCACCGGCACGGGAGGCGGCGGCCTATCCGGCGCCGGGGTACGCGGGGTCTCGCCCATGGCGCAAACACGGGAGGGAGGC
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| CDS seq | ATGGGCGAGACCCCGCGTACCCCGGCGCCGGATAGGCCGCCGCCTCCCGTGCCGGTGCGCGTTCCCGTGCCAGAGCCCCAGCCCGAGCCCGAGACGCCGCAGGCGTCGCCGTCGCCGCCTCCCGCGCCCGATCCGCCGACGCCGCTGTTGTTTCCGGAGTCGGCGCCTTCGACGCCGCGCGAGGAGTACCACACGCCGCCGCCGTCGCTGGACGAGGCGCGTGACGAGGCGCTGGTGCCTCATCAGGAGGGCGTCGTCGACGTCAACGGGGGATCGGAGGCCGCCGCCAAGAGCCCGCAGCTCTCGCCGGTGCGGCTCCAGGTGTCGCCCTCGCCCCACCGGTTGCTCCCGCCTGCGCCGGGCTCTCCCGCCGTCAACGGTGAAGATGGCGCCGCCGGGACGGCGCAAGGCCGCCGTCCGGGACGCCCGCAACTTCACCTCGCGACGGGCCGCCTCTTCCGGACGCCGTCGCAGGGGTCCCTCGCCATGTCGTCGCCCTCGCCGTCGCCTACGCCGCCGTCACCGCTGACTCCAGCGCCCGCCACCACCGCGCCCGCACCCACGCCCACGGCCAAAAGCAAGAGCGGGCAGAACACGCCGAAGCACAAGGAGGCGTTGAAGCCGCCGGCCACGCCCGTCGCGACGGCGATCGCGATACCGTTCAACCCGGCCGAGGAGGCCATGACGTCGCCTCTGCGGATCGGCAACGGCAAGGCCGCGCGGCTCGACCACCAGCACGGGCCCGTGGCAGGGGCGGCGGAGAACGGAGGGGACGTGCCGCCAGAGGTGGCGGCCGTGGCCGCCGTCGGGGAGAGGAGGACGACGTCGGTGGCGCTGCGAGTGGCCACGGCGGTGCTCAGCCTGGTGTCCTTCGCGCTCATGGTCAGCGCGCGGACGTCCGGCTGGGCCGGCGACCACTACGGCCGCTACGAGCAGTACAGGTACGCCGTCGGAGTGAACATCGTCGTCTGCATCTACTCGATCGCGCAAGCGTTCGGCGAGATTCGCCGCCTGGTTTCGCCGAGGTTTCTTTTCCGGAGCACCTCGAGCTACTACTTCAGCCTCTTCCTGGATCAGGTGTTGGCGTATCTCCTCATGTCGGCCTCGTCGGCGGCAGCGTCCCGCAACGATCTGTGGATGTCGAGCTTCGGCAAGGATCCGTTCAACAAGAAGATCAACAGCGCGGTGTGGTTTTCCTTCATCGCGTTCATCGGACTCGCCACCAACTCTCTCATCTCCACGGCCAATCTCTTCAGCATGATATGA
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| Protein seq | MGETPRTPAPDRPPPPVPVRVPVPEPQPEPETPQASPSPPPAPDPPTPLLFPESAPSTPREEYHTPPPSLDEARDEALVPHQEGVVDVNGGSEAAAKSPQLSPVRLQVSPSPHRLLPPAPGSPAVNGEDGAAGTAQGRRPGRPQLHLATGRLFRTPSQGSLAMSSPSPSPTPPSPLTPAPATTAPAPTPTAKSKSGQNTPKHKEALKPPATPVATAIAIPFNPAEEAMTSPLRIGNGKAARLDHQHGPVAGAAENGGDVPPEVAAVAAVGERRTTSVALRVATAVLSLVSFALMVSARTSGWAGDHYGRYEQYRYAVGVNIVVCIYSIAQAFGEIRRLVSPRFLFRSTSSYYFSLFLDQVLAYLLMSASSAAASRNDLWMSSFGKDPFNKKINSAVWFSFIAFIGLATNSLISTANLFSMI |
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| Function | CASP-like protein 4U1 [UniProtKB/Swiss-Prot:C5XEK4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0640700 | OsNip_01t0640700-00 | Chr01 | 25748348 | 25750451 | - | RAP2018-11-26 | ||
| CDS seq | ATGGGCGAGACCCCGCGTACCCCGGCGCCGGATAGGCCGCCGCCTCCCGTGCCGGTGCGCGTTCCCGTGCCAGAGCCCCAGCCCGAGCCCGAGACGCCGCAGGCGTCGCCGTCGCCGCCTCCCGCGCCCGATCCGCCGACGCCGCTGTTGTTTCCGGAGTCGGCGCCTTCGACGCCGCGCGAGGAGTACCACACGCCGCCGCCGTCGCTGGACGAGGCGCGTGACGAGGCGCTGGTGCCTCATCAGGAGGGCGTCGTCGACGTCAACGGGGGATCGGAGGCCGCCGCCAAGAGCCCGCAGCTCTCGCCGGTGCGGCTCCAGGTGTCGCCCTCGCCCCACCGGTTGCTCCCGCCTGCGCCGGGCTCTCCCGCCGTCAACGGTGAAGATGGCGCCGCCGGGACGGCGCAAGGCCGCCGTCCGGGACGCCCGCAACTTCACCTCGCGACGGGCCGCCTCTTCCGGACGCCGTCGCAGGGGTCCCTCGCCATGTCGTCGCCCTCGCCGTCGCCTACGCCGCCGTCACCGCTGACTCCAGCGCCCGCCACCACCGCGCCCGCACCCACGCCCACGGCCAAAAGCAAGAGCGGGCAGAACACGCCGAAGCACAAGGAGGCGTTGAAGCCGCCGGCCACGCCCGTCGCGACGGCGATCGCGATACCGTTCAACCCGGCCGAGGAGGCCATGACGTCGCCTCTGCGGATCGGCAACGGCAAGGCCGCGCGGCTCGACCACCAGCACGGGCCCGTGGCAGGGGCGGCGGAGAACGGAGGGGACGTGCCGCCAGAGGTGGCGGCCGTGGCCGCCGTCGGGGAGAGGAGGACGACGTCGGTGGCGCTGCGAGTGGCCACGGCGGTGCTCAGCCTGGTGTCCTTCGCGCTCATGGTCAGCGCGCGGACGTCCGGCTGGGCCGGCGACCACTACGGCCGCTACGAGCAGTACAGGTACGCCGTCGGAGTGAACATCGTCGTCTGCATCTACTCGATCGCGCAAGCGTTCGGCGAGATTCGCCGCCTGGTTTCGCCGAGGTTTCTTTTCCGGAGCACCTCGAGCTACTACTTCAGCCTCTTCCTGGATCAGGTGTTGGCGTATCTCCTCATGTCGGCCTCGTCGGCGGCAGCGTCCCGCAACGATCTGTGGATGTCGAGCTTCGGCAAGGATCCGTTCAACAAGAAGATCAACAGCGCGGTGTGGTTTTCCTTCATCGCGTTCATCGGACTCGCCACCAACTCTCTCATCTCCACGGCCAATCTCTTCAGCATGATATGA
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| Protein seq | MGETPRTPAPDRPPPPVPVRVPVPEPQPEPETPQASPSPPPAPDPPTPLLFPESAPSTPREEYHTPPPSLDEARDEALVPHQEGVVDVNGGSEAAAKSPQLSPVRLQVSPSPHRLLPPAPGSPAVNGEDGAAGTAQGRRPGRPQLHLATGRLFRTPSQGSLAMSSPSPSPTPPSPLTPAPATTAPAPTPTAKSKSGQNTPKHKEALKPPATPVATAIAIPFNPAEEAMTSPLRIGNGKAARLDHQHGPVAGAAENGGDVPPEVAAVAAVGERRTTSVALRVATAVLSLVSFALMVSARTSGWAGDHYGRYEQYRYAVGVNIVVCIYSIAQAFGEIRRLVSPRFLFRSTSSYYFSLFLDQVLAYLLMSASSAAASRNDLWMSSFGKDPFNKKINSAVWFSFIAFIGLATNSLISTANLFSMI
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0640700 | OsNip_01t0640700-01 | Chr01 | 25748192 | 25750473 | - | IsoSeq | ||
| CDS seq | CTCCCTCCCGTGTTTGCGCCATGGGCGAGACCCCGCGTACCCCGGCGCCGGATAGGCCGCCGCCTCCCGTGCCGGTGCGCGTTCCCGTGCCAGAGCCCCAGCCCGAGCCCGAGACGCCGCAGGCGTCGCCGTCGCCGCCTCCCGCGCCCGATCCGCCGACGCCGCTGTTGTTTCCGGAGTCGGCGCCTTCGACGCCGCGCGAGGAGTACCACACGCCGCCGCCGTCGCTGGACGAGGCGCGTGACGAGGCGCTGGTGCCTCATCAGGAGGGCGTCGTCGACGTCAACGGGGGATCGGAGGCCGCCGCCAAGAGCCCGCAGCTCTCGCCGGTGCGGCTCCAGGTGTCGCCCTCGCCCCACCGGTTGCTCCCGCCTGCGCCGGGCTCTCCCGCCGTCAACGGTGAAGATGGCGCCGCCGGGACGGCGCAAGGCCGCCGTCCGGGACGCCCGCAACTTCACCTCGCGACGGGCCGCCTCTTCCGGACGCCGTCGCAGGGGTCCCTCGCCATGTCGTCGCCCTCGCCGTCGCCTACGCCGCCGTCAC
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| Protein seq | LPPVFAPWARPRVPRRRIGRRLPCRCAFPCQSPSPSPRRRRRRRRRLPRPIRRRRCCFRSRRLRRRARSTTRRRRRWTRRVTRRWCLIRRASSTSTGDRRPPPRARSSRRCGSRCRPRPTGCSRLRRALPPSTVKMAPPGRRKAAVRDARNFTSRRAASSGRRRRGPSPCRRPRRRLRRRH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.409415 | 1.550297 | 0.790353 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0640200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g45360 | RBH | 1.628817 | 1.044290 | 0.204400 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0640700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026870 | RBH | 0.761265 | 2.440297 | 0.589777 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026360 | RBH | 0.410713 | 3.161876 | 0.634698 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026760 | RBH | 0.193631 | 5.125201 | 3.080011 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0026020 | RBH | 0.213703 | 0.193764 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025820 | RBH | 4.860212 | 0.000000 | 0.683236 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0433200 | RBH | 3.8272895 | 3.5223035 | 0.4867765 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025450 | RBH | 0.190004 | 0.105110 | 0.322519 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0422400 | RBH | 4.681672 | 7.980541 | 0.230284 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025740 | RBH | 0.219746 | 0.268213 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025660 | RBH | 0.664494 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025980 | RBH | 5.302017 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0026020 | RBH | 0.512531 | 0.632390 | 0.365492 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025850 | RBH | 0.449719 | 1.833607 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G026180 | RBH | 0.195248 | 0.0 | 1.377635 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025960 | RBH | 1.665656 | 8.532752 | 1.041002 |
