Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0635200 | OGI:01078610 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:25462003-25463684 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCGCTGCAAACACATCGATAACCAGTTCAGAAAGAGAATTTGCTGTGTGAGACTCGATGGCGTCGATGTCGGTGAGCTCGTCGAGGGCGCCGCAGTGGACGGCGAGGCAGAACGAGCAGTTCGAGCGGGCGCTGGCGGTGTACGACAGGGACACGCCGGAGCGGTGGCACAACATCGCGCGCGCCGTTGCGGGGAAGTCCGCCGACGAGGTGAAGCTCTACTACGACCTGCTCGTGGAGGACGTCAAGCGCATCGAGACCGGGAAGGTGCCCTTCCCCGCGTACAGGTGCCCCCAGCCCGCGATTGCAGGTCAGTGCATCGGAAAGAAGGCCACCGCGCGCGGCCGCTTAATTTCGATCGTGTTGTTCACCGGAGTTTACTAATCGATCAAGTCGTTGTTTTGCTATGTTTCGAAGTTTGCAGCAATCACCACAATCCACAGGAATGAAGATTTTTTTTTTTTTGGTGGCCCGTTAATTTTCTTGACGGGTTAAATCCCGACAGCCAAATTTACTTGTTATATTACCTTTACAGTTATTTCTTATCGGTTGGTCGACAAAACTTATTAAATTGACCGTTTTGATGTTGTTCTTGGCGGTCTATCCATCTCAAGAAAATTCTGGAATCTGGTAGCGAATGGCCAATTGGCCAGTCAAGGTTTAGTTTAGCTTTAGGGAAGAACCTTCTAAAGTTAGGCAAAACGATTTATAAATTCACCTTACAATTTTATTAAGCTTTGTTTAGGAGTACTTCTTTGCCTACAAATAAAGACTTCTGATGTTTGAAATTTCCCCATAAATATCATGACTTAAATTCTAGAGTATTACCCAATCACCCATTTATTTAATTTCTACCTATTTTACCGCTGAACCCCCTCACCTAAGTTCCACCCTAACTGCATTGTAGCCTTTTATCTTCTTTCTTAAAATATGCCAAGAATATTTAAAACCCTTATGTTTATGGGTAGATGAGTACTTCATCCAGTTCTATAATTCTTGACGTTTTGAACAACGAGACGGTTTTTAAAATATATCTTTGAATAATTATTCTAGTAAAATATATGCAATAAATATTTTTTTTACTTTTGTTATATTACTTTGTATGACAAATCTATGTTGCTCTAGTGCTTTTAAATTATATATTTTTAAAGTTATTACTAGTCAAAATTATAAAAGTTAAGTTTGATCTAAATTTTATCTGCCGTACGTAAATTTGGAAATCAAAAACCAGGTAATACCGGACCCTTGTGTGGTACACGGATGCTGCACTCCGGACTGTTGATTAGCCATGGCTACGTACATTACAGATCGTGAATTGAAGTAGCTAGCCAACTAGATTTGCATGCATCAATATATGCATTGATCAACTTGTAGATTGGGAATCTCTTATCCATATCGCTGATATCAACTATATATGTATACAATGTGCAGGCTGAAAGCACCTCGATCTGAACGACTGCACCTGAAGATCTAGCTATGCGGCATGAATAATATCCTAGTCTGCACTCTGTACTACGTTGATCAATCGATCTCCCGCGAGCGTGCTTATTTGTAAATTTATGCACGCGTGCAATAATGTAATTAATATATGTGTAATAGCATATTTGGGGGTAATGAATGACACTCCTACACCTATTAGTTTGAAGTGTAAATACTGAATCGAATTTCTAAATGTTTCCGAT
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| CDS seq | ATGGCGTCGATGTCGGTGAGCTCGTCGAGGGCGCCGCAGTGGACGGCGAGGCAGAACGAGCAGTTCGAGCGGGCGCTGGCGGTGTACGACAGGGACACGCCGGAGCGGTGGCACAACATCGCGCGCGCCGTTGCGGGGAAGTCCGCCGACGAGGTGAAGCTCTACTACGACCTGCTCGTGGAGGACGTCAAGCGCATCGAGACCGGGAAGGTGCCCTTCCCCGCGTACAGGTGCCCCCAGCCCGCGATTGCAGGCTGA |
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| Protein seq | MASMSVSSSRAPQWTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLVEDVKRIETGKVPFPAYRCPQPAIAG |
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| Function | Protein RADIALIS-like 6 [UniProtKB/Swiss-Prot:Q1A173] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0635200 | OsNip_01t0635200-01 | Chr01 | 25462003 | 25463635 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCGTCGATGTCGGTGAGCTCGTCGAGGGCGCCGCAGTGGACGGCGAGGCAGAACGAGCAGTTCGAGCGGGCGCTGGCGGTGTACGACAGGGACACGCCGGAGCGGTGGCACAACATCGCGCGCGCCGTTGCGGGGAAGTCCGCCGACGAGGTGAAGCTCTACTACGACCTGCTCGTGGAGGACGTCAAGCGCATCGAGACCGGGAAGGTGCCCTTCCCCGCGTACAGGTGCCCCCAGCCCGCGATTGCAGGCTGA
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| Protein seq | MASMSVSSSRAPQWTARQNEQFERALAVYDRDTPERWHNIARAVAGKSADEVKLYYDLLVEDVKRIETGKVPFPAYRCPQPAIAG |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0635200 | OsNip_01t0635200-02 | Chr01 | 25462003 | 25463684 | + | IsoSeq | ||
| CDS seq | ATGCACGCGTGCAATAATGTAATTAATATATGTGTAATAGCATATTTGGGGGTAATGAATGACACTCCTACACCTATTAGTTTGAAGTGTAAA |
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| Protein seq | MHACNNVINICVIAYLGVMNDTPTPISLKCK |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 6.008738 | 6.295690 | 8.325392 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0579600 | RBH | 5.539238 | 2.196639 | 6.359331 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g44390 | RBH | 2.658362 | 3.885398 | 1.909398 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0635200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026460 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0026090 | RBH | 0.145554 | 0.0 | 5.282879 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026440 | RBH | 2.489149 | 0.0 | 11.883885 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025750 | RBH | 0.290906 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025490 | RBH | 13.907553 | 0.0 | 1.312098 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0428000 | SBH | 0.016349 | 0 | 0.085711 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0025160 | RBH | 0.974884 | 0.0 | 0.999669 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0417500 | RBH | 7.587178 | 0.026924 | 0.1491415 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025450 | RBH | 0.503098 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025390 | RBH | 0.164588 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025660 | RBH | 2.814490 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025690 | RBH | 0.961828 | 0.0 | 1.231394 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025540 | RBH | 0.807919 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025790 | RBH | 0.0 | 0.0 | 0.836156 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025550 | RBH | 0.932947 | 0.0 | 10.231344 |
