Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0630900 | OGI:01025120 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:25219700-25221448 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGGAAGCTATAAATGTCAAAGTTTTTGATATTTGTGACCTTAATCCCCATGAGGCCTTGGTAATATAACCTACAGCGCTACTAGTGATCATTATTTCCATCATATGTTATTAGCGCCATCCTTTACTTGTTCCATTTTTCGCATGTCAACCAGGGCAATAGCTATGTTGTCAATATAATCATCAGGGATTTGGTTCCTGCTGAGCCTTGGTGGTATATAGCATGCAGCATCTGTAAGAGAGGCACAGCTAGAGAAGGAAACGCATATAAATGCCCGAGATGCAGCACTGATGCAATAGAAACAAGGTGCTCTTATCATATGCACACCTGTAGCTTTTCTCAAGTATTTTACATGATGAACCAATCTATATGCTACAATTCAATCCACGTGTATTGAGAACTGTCTGAACTGCCTTCTATAATAGGTATAGAGTAGCTATCATGGGTATCGATCCATCAGATTTGGCAAACGATCAAGCCAAAGCTGCTGAGTTTACCTTTTTTGGAGAAATCGGTGAACAATTGATTGGCAGGCCTGTTCTTAACCTGGTTGCATCTGTTCATGGAGCACGAGATATAGTACCACCAGAGATCAAAGCAATTTTTGGCAGACAATATGTCATTAGAACCAGTGTGTCACGTGGCTCATTGCAAAGAAATCGGGTATCCTACCAGGTGGATTCCCTTATGCTACCCCACCCAGATCCAAGCCATGCAATTTGTCTACCCAGCCATGATACTTGCGTGGGCTCTTCTGGACATGGCTCAACATCAGCTAATGCAGTTGAACCACATGCCATCGTTTTGTCTTCTACTCAATCTATGCCACCTTCTACGCCGCTTGTGCTTCCAGATACAAAGGTATAATCTAATTTTGTTGTCTTATAAGGATATGTGACCTGTTACATCTAAGTTACCATAATTTCTTAGATTATATCCTTTTTGTATATGACACAAGGGATAGCCATGGTGATCAGCATGAGGCAACACCACCTACTCCACAGGCTAGCAATATATTTTATACTCACATCAATTATATGCATATGTCTTTGTCAGACCTTCCTGACCATTATTACTTTATCAGGTCATAGCTATAGCACAGCTAGATAAAAAACATAAATCTTCTACGGCTGATGAGAATCTTGGCCATGGAGGGTTAGTGCCAATGGAAAATTTCATGTTTTACTTTGATTTCTTCTCTTTTTCCTCATGACTCAAACAACTTCCATTTGTAGCTCATCTCCTGATGAACATGATTGTCGCAAGCCTTCTGTTGTGCGCACACTGTTCGTACACAAGCTGCCACCGGAGCCGCCAAAATGTGACCAACTATACTCAAGCAACTTCTTGCCTCCTCATTTGTTATAGCAAAAATGTGACTCTGCTTTACATTCTTCATTTCAGGACTTGAGCCTCCCATGTGATATCCCTAGAGCGAAGTGACCTTTTGCACCTGGCATGGCAACACGTATACTTCTCTCTCTGATTGAAGCAAAGCTAAAATACTTTGGTCAATCTATTTTGCAGTGCCAACATAGAAAAGAGAAATGTTCTTTTGCGCAAGCCATTGGACCAATCGATATTAGTTTTACCTGTTACGGGCTCACTACCCCTAATAGCTAGCCAAATGATAAATGAATTAGTATCAGCAGTGTTTGGTGTCTATAATATATGCACGTTCTGACAAATATCGCTGCAAGTGATAAGACATAGTCTTATTAATAGTACTATATCTATTCTGCTTATACT
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| CDS seq | AAGGAAGCTATAAATGTCAAAGTTTTTGATATTTGTGACCTTAATCCCCATGAGGCCTTGGGCAATAGCTATGTTGTCAATATAATCATCAGGGATTTGGTTCCTGCTGAGCCTTGGTGGTATATAGCATGCAGCATCTGTAAGAGAGGCACAGCTAGAGAAGGAAACGCATATAAATGCCCGAGATGCAGCACTGATGCAATAGAAACAAGGTATAGAGTAGCTATCATGGGTATCGATCCATCAGATTTGGCAAACGATCAAGCCAAAGCTGCTGAGTTTACCTTTTTTGGAGAAATCGGTGAACAATTGATTGGCAGGCCTGTTCTTAACCTGGTTGCATCTGTTCATGGAGCACGAGATATAGTACCACCAGAGATCAAAGCAATTTTTGGCAGACAATATGTCATTAGAACCAGTGTGTCACGTGGCTCATTGCAAAGAAATCGGGTATCCTACCAGGTGGATTCCCTTATGCTACCCCACCCAGATCCAAGCCATGCAATTTGTCTACCCAGCCATGATACTTGCGTGGGCTCTTCTGGACATGGCTCAACATCAGCTAATGCAGTTGAACCACATGCCATCGTTTTGTCTTCTACTCAATCTATGCCACCTTCTACGCCGCTTGTGCTTCCAGATACAAAGGACACAAGGGATAGCCATGGTGATCAGCATGAGGCAACACCACCTACTCCACAGGCTAGCAATATATTTTATACTCACATCAATTATATGCATATGTCTTTGTCAGACCTTCCTGACCATTATTACTTTATCAGGTCATAG
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| Protein seq | KEAINVKVFDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSICKRGTAREGNAYKCPRCSTDAIETRYRVAIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCVGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPLVLPDTKDTRDSHGDQHEATPPTPQASNIFYTHINYMHMSLSDLPDHYYFIRS |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0630900 | OsNip_01t0630900-00 | Chr01 | 25219700 | 25221448 | + | RAP2018-11-26 | ||
| CDS seq | AAGGAAGCTATAAATGTCAAAGTTTTTGATATTTGTGACCTTAATCCCCATGAGGCCTTGGGCAATAGCTATGTTGTCAATATAATCATCAGGGATTTGGTTCCTGCTGAGCCTTGGTGGTATATAGCATGCAGCATCTGTAAGAGAGGCACAGCTAGAGAAGGAAACGCATATAAATGCCCGAGATGCAGCACTGATGCAATAGAAACAAGGTATAGAGTAGCTATCATGGGTATCGATCCATCAGATTTGGCAAACGATCAAGCCAAAGCTGCTGAGTTTACCTTTTTTGGAGAAATCGGTGAACAATTGATTGGCAGGCCTGTTCTTAACCTGGTTGCATCTGTTCATGGAGCACGAGATATAGTACCACCAGAGATCAAAGCAATTTTTGGCAGACAATATGTCATTAGAACCAGTGTGTCACGTGGCTCATTGCAAAGAAATCGGGTATCCTACCAGGTGGATTCCCTTATGCTACCCCACCCAGATCCAAGCCATGCAATTTGTCTACCCAGCCATGATACTTGCGTGGGCTCTTCTGGACATGGCTCAACATCAGCTAATGCAGTTGAACCACATGCCATCGTTTTGTCTTCTACTCAATCTATGCCACCTTCTACGCCGCTTGTGCTTCCAGATACAAAGGACACAAGGGATAGCCATGGTGATCAGCATGAGGCAACACCACCTACTCCACAGGCTAGCAATATATTTTATACTCACATCAATTATATGCATATGTCTTTGTCAGACCTTCCTGACCATTATTACTTTATCAGGTCATAG
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| Protein seq | KEAINVKVFDICDLNPHEALGNSYVVNIIIRDLVPAEPWWYIACSICKRGTAREGNAYKCPRCSTDAIETRYRVAIMGIDPSDLANDQAKAAEFTFFGEIGEQLIGRPVLNLVASVHGARDIVPPEIKAIFGRQYVIRTSVSRGSLQRNRVSYQVDSLMLPHPDPSHAICLPSHDTCVGSSGHGSTSANAVEPHAIVLSSTQSMPPSTPLVLPDTKDTRDSHGDQHEATPPTPQASNIFYTHINYMHMSLSDLPDHYYFIRS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_03g0855700 | RBH | 8.259602 | 9.029697 | 10.913931 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g44020 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0630900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026150 | RBH | 0.0 | 2.035789 | 5.564703 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025770 | RBH | 0.063494 | 0.862105 | 1.782644 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026120 | RBH | 0.000000 | 2.830213 | 12.929478 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025440 | RBH | 0.021210 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025160 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0423600 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024830 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0412200 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025120 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025340 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025360 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025220 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025480 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025250 | RBH | 0.0 | 0.0 | 0.0 |
