Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0629900 | OGI:01077560 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:25152108-25158338 | ||||||||
| Gene Symbol | MPK20-1, OsMPK20-1, OsMPK10 | ||||||||||
| DNA seq | GAAGCTACGGTAAACCGCGCAATTGTCTGCTTTATATCTTTCTCAAGTCATTCTGATGTAGCACTTTTGATATGAGAAACATCTCTATACAACATTGGAAAAAGAAAAAAAAAAGAGGAAAAGGTTAGTGGTCCTTCCTTTCCCTTTTGTCCCCTCACCCTAGAAATACAATTGGCGCCTAAAATATGCTCAGATTACAAGCCACTGGACTACCCCCTTCAAGTGTGCAACGAAGGGCACATTTTCTTACACACACACAGGCAGATACAAGCTGATTTGCCTAAAGCGAATAGAGAGTTGAAAAGCTTTTGACACCTCCGGTGGTGGTTCCTGATCAAGCAGGAACAGGAGCAGCAGGGCACCAATGCAACTTCTTAGGCATCGTCGTCAACCTTGGATTGCCCTGTGCTCTTGGTGCCCAAACTAGCTTGAACTGCCACTTTGTTCCCAATGCTTCGCCGCAAGCTAGCATCAGAGCTCCCATTGGGCATGCAGGATGTGCCATGGTTGGGCACTAATACATCCTCGACATGCCGTAGGGAACAACACCGACCTTTCTGTGCGCACTTGCTGCCACTCCCGCAGCAGTAGCAGCGAGGCCATTGAGAGATCTCGTGTATAGGTTTGTCTCTGCTGCTAACCTTTCGGACGAATCGCTTTTCGGCCCTCCTGATAGATGGAACGGGGGTGCTCTCATGTCCAGAGCAACATCAGTCACAGTGGCACTGTTTGCGCAAGTGTAGGCCTGCTGGTGCAGCGTATACCTTTCGGCCTGCGACAGCTCAGAACAAGCTGACTTACCGGGTATCTGATAATAACCATAAGCTTGAGGGATTTGTTGCTGGGGAGGATACCCTGAGTTCATTGCCAATCTCCGTGCGTCATAGGAATCCTTTGTGGCACCATTTTCATAAGGCAATACTGGACCAACAACTCTTCCTGGTCTTGCTGTAAAATAAAGAATTACCGCAGATTAGATTCGACTATTATCAACCAAACATGTACAGTATATAATGTATTAACCACAAAGCACCTGTTGGCACTCTTTGTGGAGCTTGTGAGGTCCTCGGGGCATTGCCAGAAAATCTGTCAAATTCCCGGGGATTGCTATAGGGTTCATCAGATGGTTTATCCCTTGATGGGCCAATGCGGGGCTGTTCCTTGGCAGGAATTGGAGTTGAGTGAACAATAGTAGACCTGCAAAACGTAGCAAATGATTCATGATTCAATCTAACTTAAACACAAGAACAAAGTGATCAACCAGGTAGAAGAGAAAATAAAAGTTCTTCGATGGCTTTTTTTTTTTAAAAAAAAAGGTTAAAGTCACAAGAAACACTAAGGGCAATTCAACTTGGCCTTCTTGAATCAAATCAAAGTGGATGTACCAGTAACAGACTACCAGTTTCTCATGCAATACCTGAAAGTTAAACTTAGTACTGTACTAATCTATAAACAGAGAGCAACACACATATTAGTACAGTACTAAGTTTAACTTTCAGGTATTGCATGAGAAATTGGTAGTCTGTTACTGGTACATCCACTTTGATTTGATTCAAGACACCTTGTCCTCAGCACATCAGGTATGGTCAATGTGAAGCTTTTAAAAGTGTGACCTTTCCTTGAAGGCAAGAATAAAGTTTCCAGTATGATTTTACACCGTTCGAAACATAGACGATAGGAAAAGAGCAGCTCTATCAAGCTCTGTAATGTGCTTAAAAGTGTTCTGAACAACTGCAACTAGTATGAAAAAACACAGGTTAAACTGAACAGAACGTATGAATAAAAACAATACCTGGGAAGAGAAGTGTGCTTTCTATCCATTGGAATTACCGGGCCATTTCCACCATTTTCTTCAAGATGGGCAAATTGCTTTCTAAATTGATCAACAGCACTACATAACAAAAATGGGTGTTGTTCTCAGTAGAAATTGATTGAATTAAAAGCACAAGAACATGCATGTGCAACAAAAAACAAAGGTTGGTTCTGGTACATGCATGTGCAAAGGGTCATATATATGTTATATCCAAAGATATGATTGCTAAAACCTTGGGTATAGAAAGGTTGTTCTCTCGGTGCCATTGATATAGTCTTTGAGCAATTGTGGATGGTATTCCAGTATTTCACGGAATATCAACTCTCTTATATCTTCCTTTGTCACTCTTCTACGCTCAAACTCAAACTCCATTTTTGTGATAGGTTGACAGGATGGTTCTCTCTCAACTTTTGCGAGCCCTTTGAAGTATGGATGAGCCAATGCCTGACATGAATAACGAATAACTAAATAATTTTCACAGTTTGAAAATACAATATTTAGTGCTGCTGAGATTAAACAAAGCTGCACCATGCACCATGCTGTTTAAATAGTTACCTCTTCGGCAGTTGGACGGTCCTTTGGATCGAATGCTAATAGTTTTTGTAGAAGATCCAACGCCAAAGGATCTGCACTAGGAAACTTCTGCGAAAATAGGATTGGCTCCTTCTTTCTCATGCTACTCAGATACCTCCTTGCTTTGTCATTCCGGACCTGAGAATAGATTGCCAATGTCAACCTTCCATAACTTAGGTGATACCCAGCAGATAATCAACAGAAGGTTTCCCTGAAAGAATAAGTATCATACCCGAGAAATTGTATCCATGGATGGCGTGCCCAGAAGATCAGTCATCAAATCTAATTGATGGACAACATTTTTACCAGGAAATAAAGGCTTTCCTGTCAGCACCTCAGCAAAGATGCATCCAATGCTCCAAATGTCAATGGCTGGTGTATACTGCAATTTTGTTGAGAATAAATTAACTAATACTACACAGAAAAAATTATCATATTTACATGGTTCAATATTGTCTACACTTCTAAAAAGAGTTGGAGACGACTGTATGCTCTATCTCCATACCACACCCCAGGAGATGTTATATGGCTAGATTTATGTATACATGTGTGTTGTTTGCAAGATGTTTTACAAAAATTACATTCTTTGAGCGTATGCACATATAGGTGGTCGGTTGAAATCGAGTAGTCATGAGTATAAATTGCTAAACTTTAGATTTTTACTTTTGCGTTTCTAATTTTAGATCTTACAGAATACTTATTTGGTATCCATCAGGCCATCACAATGAATGTGCGGACACGATTCCCAGTCAACCAAATACATATAAGATGGCAGTATAGCATCATTGACCTCTCCTAGTCTTAGCCAAATTAAAACCAAGAATGATATAGTCCATAGCCAACTTAAAACCAAGAATGCTATAGTCCAGCACAAAACTTACCTTTGAAAAGAAGGATCCACAGAGCTCTGGAGCCCTGTACCATCTTGTTGCAACATAATCCTGCAGGCAAATGAAGAGACATCAGAGGTGATCCGCGTACACAAATAAGCCAGAAGCCAAAGGTTTAGACAAAACTAAGTTAAAGATAGATATTTCCATGAGCATACCGTCCAAAAGATTGTTGTCGGAGTATCATTGAATGCAACTCGCGCCAGTCCAAAATCACAAATTTTCAGTTTGCAGTTGGAATTAGCTAATATATTCTTCGGCTTCAGGTCCCGGTGATAAACATTAGCTGCAGTCACGTGGACTTAGTATAAGCAAAGCTTGCAAAAGGAAAAAGTAGCACATCTGCATAGAACATTTATGCACATTCTGCTGATAAGAGAATTGGAAAAATGGTAGTGTTGTTCAGAGATTACAGCATAAGCAACCAACCAATATGCAAGTCATAAGCAGATTATTTAATACAAGAACTCTAAAATAATGAGGAAGTAACACATTATCTATCAAGAATACCTGGGATCCTGCGCATTTTCTACCCTTAAAGGTTGCAAAAACAGAGTGATCTTTTTGAAGCATTGAATTCAATAGGGCCCCAATAGGGCCCATATGTTTTGCACCTCTCCCCATACCCACCCAAGGCACTTGTTGACACTTGAGACCAGTTGTTTTACGCTATAAATCTGCAAATCATGCTAATCCCATAATTTTATATGGAAATTGCATGAATATCCTACAAGAATCTTACGTAGTACACTAACCAAAAAGGAAGGTATCCAAAGGTAATAATAATATATCTAATCAGGAGACACTGACTCAATGCAGGTTCACTAGAGCACATACATTGTGTGATTCACGTTACATATGATCTTCAAAGCAAAACAATGGACTGAAAGTGACAGTTCCCTACCAGTGTGAATGTATTTCAGAGCCCGGAGTAGTTGGTAAAGAAAGAACTGATAATGCTCCTTCGTCAAGTCATCATTAGCCTTTATAACTTGGTGAAGATCAGACTCCATAAGCTCAAAAACTACATAAATATCTTTGAAATCCCTCCTCGATGGAGGCAACATAATGTGCTTGATCTCAACTATGTCAGGATGTCTTAGCAGCCTCAGAAGCTTGATCTCACGGAGAATCCGTGCAGCATCAGATATGTGTTCAAAGATATCGTGTATCTTCTTGATTGCCACTTTCTCTCCAGTGTGGACATCTATCGCTGAGCACACCACCCCATAGCTTCCCTTACCAATAACTTCCTGAATCTTGTATCGACTTGCATCGCCATACTCCGTGAAAAAATCCGCCTCTGTAGAACTCTGTAAAACAATGGCAGATATCAAGTTAAGAACCACTGAAAACAAAATCACCATTTAGAAAAGGCCACATCAAAAGAAGCTTCAGTGATTAATGGACCGTCTGTCCTCACAATCATATGCAGGTAATTAATGCAAAATGGTCAATGCAGCATAATCCAGAAAGAATGAATGGCACGAAAATTGGAGTATCGCAAAAACCAAGGCAGATCTCCAGAAACTTTTGATGGCCGAAACGTAAATGACCAGATAATTATGGTGCTAGAACCAGCATTAACGAACCGATGCAAATCTCAATTGCTCTGCAGATCAAGACAAATATCTTTACGAGCTACAGATCTCAAAGCTGTAGTTGCCAGAACTGGCATCCTCGGATGCTGCACTTGTGAAGCCAAGTGCTCGTGCACAGATCAGGAGAACCCCACAAGAAAAGGCATCAGCTTTGCTCACCGACAAGGGAAAGGAATGGCCCCCATGCCTCTGCGCGGGCGGCGCCTCGATGCCACACAGGGGTGCGGTCAACTTTTGCATGTGAATTACAAGTTGTTATAGTATGGGAGCACCAAATTTCAGCTTTTCATCCCAAATGTGGGCAAAAGTCTTTCCGAAACGCAGTGCAGTGCGAGGGGATTGCAGAAAACGAATGGAACAACGGCAGGAAGGAGGGAAGAAGAACGACATATAATCATGCGAAGGACTCCCAACTCAATTTGGACTAGAAGGATCAGCAACGGCTAACCAACAACAGAACAAGGACCAAAAGAAGACATTTATGCCGAACAGCAACGGCGATTCAAACTTTCGAATTGACACGGCATTGAAAAAAGGAAAAAATAAACTAAAACAGGCACACGCCGAATCCATCAGAAAGATGCCAGAAGGTCACCGACGTAAAAAAATTTCTGCTGAACTGAAAGGGAAAGAAAATCCTATCATGATGATGCCATATACTAACAACGTCAAAATTCTACAGAACTGAAATCTGGAGGTAAAAATAAATCCGTTCAGAATGACGCAAGAACGTCAACGACATCAGAAAGGGGAAAAAATCGAACTTCCAGACGGGCAGAGACCCAAATCATCGCAAGGAAGCCGCACGAGCAGCTCAAACCGCACAGAAACGGCAGGGCAAGCGGAAGAGCACGGAACCAATTCACACCGAAGCAAAGAACGCTCGAAACCAAGAGAGAGAGATCTCCCGAGCCAAAACCAAAGCCCACCTTCTTGCGCTGATCCTGCTGCATCTCGCCGCCCCGCCGGATCTCGCACCAAAAATATCCTCAGAAACAAACGCCGCCGCTTCCCCTCCCTCCCGGCTACCACAGCAACCCCAACAAGCCCACCTCCAGATCAATCCGCCAAGAATCAACGGGTCAGACTCAGACACACGGCATTGGCTCGCGCCGCGCCGCGCCGCCGCGAGGCCGAGAAAAGCGCACACGCCGCAGGTGAGGGGACGGGAAAAGGCCGGAAGGAAGGAAGGCGCGGGCGGGGGGAGACCCTAACCCTAGCGACCGCCTGCGCCGGCTGGGGGCAGGGCTAGGGCTCCCTCTCCTCCTCTTCCTCCTCCTCTCGCCTTCGCTCTGCGCGAGCCCTCAAGAGAGAGAGAGAGAGAGGAATAAGAGAGAGAAGCACGGGAGGAGAG
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| CDS seq | ATGCAGCAGGATCAGCGCAAGAAGAGTTCTACAGAGGCGGATTTTTTCACGGAGTATGGCGATGCAAGTCGATACAAGATTCAGGAAGTTATTGGTAAGGGAAGCTATGGGGTGGTGTGCTCAGCGATAGATGTCCACACTGGAGAGAAAGTGGCAATCAAGAAGATACACGATATCTTTGAACACATATCTGATGCTGCACGGATTCTCCGTGAGATCAAGCTTCTGAGGCTGCTAAGACATCCTGACATAGTTGAGATCAAGCACATTATGTTGCCTCCATCGAGGAGGGATTTCAAAGATATTTATGTAGTTTTTGAGCTTATGGAGTCTGATCTTCACCAAGTTATAAAGGCTAATGATGACTTGACGAAGGAGCATTATCAGTTCTTTCTTTACCAACTACTCCGGGCTCTGAAATACATTCACACTGCTAATGTTTATCACCGGGACCTGAAGCCGAAGAATATATTAGCTAATTCCAACTGCAAACTGAAAATTTGTGATTTTGGACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGCTGACAGGAAAGCCTTTATTTCCTGGTAAAAATGTTGTCCATCAATTAGATTTGATGACTGATCTTCTGGGCACGCCATCCATGGATACAATTTCTCGGGTCCGGAATGACAAAGCAAGGAGGTATCTGAGTAGCATGAGAAAGAAGGAGCCAATCCTATTTTCGCAGAAGTTTCCTAGTGCAGATCCTTTGGCGTTGGATCTTCTACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCATCCTGTCAACCTATCACAAAAATGGAGTTTGAGTTTGAGCGTAGAAGAGTGACAAAGGAAGATATAAGAGAGTTGATATTCCGTGAAATACTGGAATACCATCCACAATTGCTCAAAGACTATATCAATGGCACCGAGAGAACAACCTTTCTATACCCAAGTGCTGTTGATCAATTTAGAAAGCAATTTGCCCATCTTGAAGAAAATGGTGGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGGGAATTTGACAGATTTTCTGGCAATGCCCCGAGGACCTCACAAGCTCCACAAAGAGTGCCAACAGCAAGACCAGGAAGAGTTGTTGGTCCAGTATTGCCTTATGAAAATGGTGCCACAAAGGATTCCTATGACGCACGGAGATTGGCAATGAACTCAGGGTATCCTCCCCAGCAACAAATCCCTCAAGCTTATGGTTATTATCAGATACCCGGTAAGTCAGCTTGTTCTGAGCTGTCGCAGGCCGAAAGGTATACGCTGCACCAGCAGGCCTACACTTGCGCAAACAGTGCCACTGTGACTGATGTTGCTCTGGACATGAGAGCACCCCCGTTCCATCTATCAGGAGGGCCGAAAAGCGATTCGTCCGAAAGGTTAGCAGCAGAGACAAACCTATACACGAGATCTCTCAATGGCCTCGCTGCTACTGCTGCGGGAGTGGCAGCAAGTGCGCACAGAAAGGTCGGTGTTGTTCCCTACGGCATGTCGAGGATGTATTAG
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| Protein seq | MQQDQRKKSSTEADFFTEYGDASRYKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEEALAHPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYINGTERTTFLYPSAVDQFRKQFAHLEENGGNGPVIPMDRKHTSLPRSTIVHSTPIPAKEQPRIGPSRDKPSDEPYSNPREFDRFSGNAPRTSQAPQRVPTARPGRVVGPVLPYENGATKDSYDARRLAMNSGYPPQQQIPQAYGYYQIPGKSACSELSQAERYTLHQQAYTCANSATVTDVALDMRAPPFHLSGGPKSDSSERLAAETNLYTRSLNGLAATAAGVAASAHRKVGVVPYGMSRMY |
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| Function | Mitogen-activated protein kinase 10 [UniProtKB/Swiss-Prot:Q5ZCI1] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0629900 | OsNip_01t0629900-01 | Chr01 | 25152108 | 25158338 | - | RAP2018-11-26 | ||
| CDS seq | ATGCAGCAGGATCAGCGCAAGAAGAGTTCTACAGAGGCGGATTTTTTCACGGAGTATGGCGATGCAAGTCGATACAAGATTCAGGAAGTTATTGGTAAGGGAAGCTATGGGGTGGTGTGCTCAGCGATAGATGTCCACACTGGAGAGAAAGTGGCAATCAAGAAGATACACGATATCTTTGAACACATATCTGATGCTGCACGGATTCTCCGTGAGATCAAGCTTCTGAGGCTGCTAAGACATCCTGACATAGTTGAGATCAAGCACATTATGTTGCCTCCATCGAGGAGGGATTTCAAAGATATTTATGTAGTTTTTGAGCTTATGGAGTCTGATCTTCACCAAGTTATAAAGGCTAATGATGACTTGACGAAGGAGCATTATCAGTTCTTTCTTTACCAACTACTCCGGGCTCTGAAATACATTCACACTGCTAATGTTTATCACCGGGACCTGAAGCCGAAGAATATATTAGCTAATTCCAACTGCAAACTGAAAATTTGTGATTTTGGACTGGCGCGAGTTGCATTCAATGATACTCCGACAACAATCTTTTGGACGGATTATGTTGCAACAAGATGGTACAGGGCTCCAGAGCTCTGTGGATCCTTCTTTTCAAAGTATACACCAGCCATTGACATTTGGAGCATTGGATGCATCTTTGCTGAGGTGCTGACAGGAAAGCCTTTATTTCCTGGTAAAAATGTTGTCCATCAATTAGATTTGATGACTGATCTTCTGGGCACGCCATCCATGGATACAATTTCTCGGGTCCGGAATGACAAAGCAAGGAGGTATCTGAGTAGCATGAGAAAGAAGGAGCCAATCCTATTTTCGCAGAAGTTTCCTAGTGCAGATCCTTTGGCGTTGGATCTTCTACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCATCCTGTCAACCTATCACAAAAATGGAGTTTGAGTTTGAGCGTAGAAGAGTGACAAAGGAAGATATAAGAGAGTTGATATTCCGTGAAATACTGGAATACCATCCACAATTGCTCAAAGACTATATCAATGGCACCGAGAGAACAACCTTTCTATACCCAAGTGCTGTTGATCAATTTAGAAAGCAATTTGCCCATCTTGAAGAAAATGGTGGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGGGAATTTGACAGATTTTCTGGCAATGCCCCGAGGACCTCACAAGCTCCACAAAGAGTGCCAACAGCAAGACCAGGAAGAGTTGTTGGTCCAGTATTGCCTTATGAAAATGGTGCCACAAAGGATTCCTATGACGCACGGAGATTGGCAATGAACTCAGGGTATCCTCCCCAGCAACAAATCCCTCAAGCTTATGGTTATTATCAGATACCCGGTAAGTCAGCTTGTTCTGAGCTGTCGCAGGCCGAAAGGTATACGCTGCACCAGCAGGCCTACACTTGCGCAAACAGTGCCACTGTGACTGATGTTGCTCTGGACATGAGAGCACCCCCGTTCCATCTATCAGGAGGGCCGAAAAGCGATTCGTCCGAAAGGTTAGCAGCAGAGACAAACCTATACACGAGATCTCTCAATGGCCTCGCTGCTACTGCTGCGGGAGTGGCAGCAAGTGCGCACAGAAAGGTCGGTGTTGTTCCCTACGGCATGTCGAGGATGTATTAG
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| Protein seq | MQQDQRKKSSTEADFFTEYGDASRYKIQEVIGKGSYGVVCSAIDVHTGEKVAIKKIHDIFEHISDAARILREIKLLRLLRHPDIVEIKHIMLPPSRRDFKDIYVVFELMESDLHQVIKANDDLTKEHYQFFLYQLLRALKYIHTANVYHRDLKPKNILANSNCKLKICDFGLARVAFNDTPTTIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAEVLTGKPLFPGKNVVHQLDLMTDLLGTPSMDTISRVRNDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEEALAHPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYINGTERTTFLYPSAVDQFRKQFAHLEENGGNGPVIPMDRKHTSLPRSTIVHSTPIPAKEQPRIGPSRDKPSDEPYSNPREFDRFSGNAPRTSQAPQRVPTARPGRVVGPVLPYENGATKDSYDARRLAMNSGYPPQQQIPQAYGYYQIPGKSACSELSQAERYTLHQQAYTCANSATVTDVALDMRAPPFHLSGGPKSDSSERLAAETNLYTRSLNGLAATAAGVAASAHRKVGVVPYGMSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0629900 | OsNip_01t0629900-02 | Chr01 | 25152119 | 25154627 | - | RAP2018-11-26 | ||
| CDS seq | AATGACAAAGCAAGGAGGTATCTGAGTAGCATGAGAAAGAAGGAGCCAATCCTATTTTCGCAGAAGTTTCCTAGTGCAGATCCTTTGGCGTTGGATCTTCTACAAAAACTATTAGCATTCGATCCAAAGGACCGTCCAACTGCCGAAGAGGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCATCCTGTCAACCTATCACAAAAATGGAGTTTGAGTTTGAGCGTAGAAGAGTGACAAAGGAAGATATAAGAGAGTTGATATTCCGTGAAATACTGGAATACCATCCACAATTGCTCAAAGACTATATCAATGGCACCGAGAGAACAACCTTTCTATACCCAAGTGCTGTTGATCAATTTAGAAAGCAATTTGCCCATCTTGAAGAAAATGGTGGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGGGAATTTGACAGATTTTCTGGCAATGCCCCGAGGACCTCACAAGCTCCACAAAGAGTGCCAACAGCAAGACCAGGAAGAGTTGTTGGTCCAGTATTGCCTTATGAAAATGGTGCCACAAAGGATTCCTATGACGCACGGAGATTGGCAATGAACTCAGGGTATCCTCCCCAGCAACAAATCCCTCAAGCTTATGGTTATTATCAGATACCCGGTAAGTCAGCTTGTTCTGAGCTGTCGCAGGCCGAAAGGTATACGCTGCACCAGCAGGCCTACACTTGCGCAAACAGTGCCACTGTGACTGATGTTGCTCTGGACATGAGAGCACCCCCGTTCCATCTATCAGGAGGGCCGAAAAGCGATTCGTCCGAAAGGTTAGCAGCAGAGACAAACCTATACACGAGATCTCTCAATGGCCTCGCTGCTACTGCTGCGGGAGTGGCAGCAAGTGCGCACAGAAAGGTCGGTGTTGTTCCCTACGGCATGTCGAGGATGTATTAG
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| Protein seq | NDKARRYLSSMRKKEPILFSQKFPSADPLALDLLQKLLAFDPKDRPTAEEALAHPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYINGTERTTFLYPSAVDQFRKQFAHLEENGGNGPVIPMDRKHTSLPRSTIVHSTPIPAKEQPRIGPSRDKPSDEPYSNPREFDRFSGNAPRTSQAPQRVPTARPGRVVGPVLPYENGATKDSYDARRLAMNSGYPPQQQIPQAYGYYQIPGKSACSELSQAERYTLHQQAYTCANSATVTDVALDMRAPPFHLSGGPKSDSSERLAAETNLYTRSLNGLAATAAGVAASAHRKVGVVPYGMSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0629900 | OsNip_01t0629900-03 | Chr01 | 25152141 | 25154509 | - | RAP2018-11-26 | ||
| CDS seq | TTCGATCCAAAGGACCGTCCAACTGCCGAAGAGGCATTGGCTCATCCATACTTCAAAGGGCTCGCAAAAGTTGAGAGAGAACCATCCTGTCAACCTATCACAAAAATGGAGTTTGAGTTTGAGCGTAGAAGAGTGACAAAGGAAGATATAAGAGAGTTGATATTCCGTGAAATACTGGAATACCATCCACAATTGCTCAAAGACTATATCAATGGCACCGAGAGAACAACCTTTCTATACCCAAGTGCTGTTGATCAATTTAGAAAGCAATTTGCCCATCTTGAAGAAAATGGTGGAAATGGCCCGGTAATTCCAATGGATAGAAAGCACACTTCTCTTCCCAGGTCTACTATTGTTCACTCAACTCCAATTCCTGCCAAGGAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGGGAATTTGACAGATTTTCTGGCAATGCCCCGAGGACCTCACAAGCTCCACAAAGAGTGCCAACAGCAAGACCAGGAAGAGTTGTTGGTCCAGTATTGCCTTATGAAAATGGTGCCACAAAGGATTCCTATGACGCACGGAGATTGGCAATGAACTCAGGGTATCCTCCCCAGCAACAAATCCCTCAAGCTTATGGTTATTATCAGATACCCGGTAAGTCAGCTTGTTCTGAGCTGTCGCAGGCCGAAAGGTATACGCTGCACCAGCAGGCCTACACTTGCGCAAACAGTGCCACTGTGACTGATGTTGCTCTGGACATGAGAGCACCCCCGTTCCATCTATCAGGAGGGCCGAAAAGCGATTCGTCCGAAAGGTTAGCAGCAGAGACAAACCTATACACGAGATCTCTCAATGGCCTCGCTGCTACTGCTGCGGGAGTGGCAGCAAGTGCGCACAGAAAGGTCGGTGTTGTTCCCTACGGCATGTCGAGGATGTATTAG
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| Protein seq | FDPKDRPTAEEALAHPYFKGLAKVEREPSCQPITKMEFEFERRRVTKEDIRELIFREILEYHPQLLKDYINGTERTTFLYPSAVDQFRKQFAHLEENGGNGPVIPMDRKHTSLPRSTIVHSTPIPAKEQPRIGPSRDKPSDEPYSNPREFDRFSGNAPRTSQAPQRVPTARPGRVVGPVLPYENGATKDSYDARRLAMNSGYPPQQQIPQAYGYYQIPGKSACSELSQAERYTLHQQAYTCANSATVTDVALDMRAPPFHLSGGPKSDSSERLAAETNLYTRSLNGLAATAAGVAASAHRKVGVVPYGMSRMY
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0629900 | OsNip_01t0629900-04 | Chr01 | 25152143 | 25153267 | - | RAP2018-11-26 | ||
| CDS seq | GAACAGCCCCGCATTGGCCCATCAAGGGATAAACCATCTGATGAACCCTATAGCAATCCCCGGGAATTTGACAGATTTTCTGGCAATGCCCCGAGGACCTCACAAGCTCCACAAAGAGTGCCAACAGCAAGACCAGGAAGAGTTGTTGGTCCAGTATTGCCTTATGAAAATGGTGCCACAAAGGATTCCTATGACGCACGGAGATTGGCAATGAACTCAGGGTATCCTCCCCAGCAACAAATCCCTCAAGCTTATGGTTATTATCAGATACCCGGTAAGTCAGCTTGTTCTGAGCTGTCGCAGGCCGAAAGGTATACGCTGCACCAGCAGGCCTACACTTGCGCAAACAGTGCCACTGTGACTGATGTTGCTCTGGACATGAGAGCACCCCCGTTCCATCTATCAGGAGGGCCGAAAAGCGATTCGTCCGAAAGGTTAGCAGCAGAGACAAACCTATACACGAGATCTCTCAATGGCCTCGCTGCTACTGCTGCGGGAGTGGCAGCAAGTGCGCACAGAAAGGTCGGTGTTGTTCCCTACGGCATGTCGAGGATGTATTAG
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| Protein seq | EQPRIGPSRDKPSDEPYSNPREFDRFSGNAPRTSQAPQRVPTARPGRVVGPVLPYENGATKDSYDARRLAMNSGYPPQQQIPQAYGYYQIPGKSACSELSQAERYTLHQQAYTCANSATVTDVALDMRAPPFHLSGGPKSDSSERLAAETNLYTRSLNGLAATAAGVAASAHRKVGVVPYGMSRMY |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0629900 | OsNip_01t0629900-05 | Chr01 | 25152149 | 25158282 | - | IsoSeq | ||
| CDS seq | GCGCAGAGCGAAGGCGAGAGGAGGAGGAAGAGGAGGAGAGGGAGCCCTAGCCCTGCCCCCAGCCGGCGCAGGCGGTCGCTAGGGTTAGGGTCTCCCCCCGCCCGCGCCTTCCTTCCTTCCGGCCTTTTCCCGTCCCCTCACCTGCGGCGTGTGCGCTTTTCTCGGCCTCGCGGCGGCGCGGCGCGGCGCGAGCCAATGCCGTGT
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| Protein seq | AQSEGERRRKRRRGSPSPAPSRRRRSLGLGSPPARAFLPSGLFPSPHLRRVRFSRPRGGAARREPMPC |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| RI | Chr01 | 25153900 | 25154364 | - | OsNip_01t0629900-05 | OsNip_01t0629900-03,OsNip_01t0629900-05,OsNip_01t0629900-02,OsNip_01t0629900-01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.118564 | 1.751590 | 5.921809 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0576800 | SBH | 0.0 | 0.0 | 6.458483 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g43910 | RBH | 0.586948 | 0.390407 | 2.491709 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0629900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0026110 | RBH | 0.221199 | 21.029314 | 10.394224 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0025740 | RBH | 0.018593 | 9.096521 | 7.847928 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0026070 | RBH | 0.245997 | 19.290781 | 22.835548 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0025400 | RBH | 0.000000 | 1.091047 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0025120 | RBH | 3.790177 | 41.873089 | 22.039795 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0422100 | RBH | 12.6228635 | 34.007044 | 73.2201005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0024790 | RBH | 0.166297 | 2.326663 | 6.531600 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0410800 | RBH | 15.3029725 | 37.229664 | 26.8013905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0025080 | RBH | 0.0 | 0.288967 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0025040 | RBH | 0.656998 | 18.113794 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0025300 | RBH | 0.839834 | 50.945835 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0025310 | RBH | 0.685425 | 3.208404 | 3.074354 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0025180 | RBH | 0.160701 | 12.188327 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G025420 | RBH | 0.150409 | 11.640583 | 6.821091 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0025200 | RBH | 0.289528 | 23.566322 | 30.106562 |
