Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0596100 | OGI:01072790 | 5/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:23363801-23365877 | ||||||||
| Gene Symbol | OsFbox025, OsFbox25, Os_F0325 | ||||||||||
| DNA seq | GTTGCCTCGCCTCCTCGCCGTCCGGCCCACCCACCACCCCGGCGGCGGCGGCGGCCATGGATTACCGGGCGCTCATGACGATGGAGAAGGTCCTTGTTCAGATGGAGAAGGACGGCGTGGACTCGCGGATGCTGGACCTCGGCGCCGACTGCATGTGCAAACTCCTCGTGGCATCCCTCCCCGACCCGCCCGTCTACCCCGACGCCGTCCTCTCGGCCAACGACGACGACGACTTGTCCGGCGCCGGCGCCGAGGACCGCATCGGCGCGCTCCCCGACGACCTCCTCGGCGGCGTCGTCTCCCGCCTCCCTATCAAGGACGCCGTGCGCACCGCCGCGCTGTCTTCACGGTGGCGCCGCATCTGGCTCTCCGCGCCGCTCGTCCTCGTCGACGGCCACCTCCTCCCGCCGGGCGAGGAGGCGGGCCAACTCGCGCTCGACGCCAGCGGCGCCGTCGCCGCCGCGGTGTCGCGCGTCCTCGAGGCCCACCCGGGCCCCTTCCGCTACGTCGAGCTCACCTCCACCGCCATGGGGGCTCGCGCTCGCCGCGGCGACCTCGCGCGCTGGCTCCACCTCCTCGCCGTCAAGGGCGTCCGCGAGCTCGTCTTCGTGAACCGCCGCAGGCCCTTGGACGTCGCCCTCCCCGCCACGGTGTTCGCCCTCGCGCCCCTCAGCCGCCTCTACCTCGGCACCTGGAAGTTCCCGGACACCGCCGCCCTCCCGCGCGGCGCCGGCTTCCCCCACCTCCGGGAGCTCGGCCTCTACTGCGTCGCCATGGAGGACCGGGACCTCGACTTCGTCCTCGCCAACAGCCCCGTCCTGGAGTGCCTCGGCATCTACTACAGCCAGAGGCAGATTGTGCTCCTCCGCCTCGCCAGCCACAGCCTGCGGTGCGTGCAGATCTGCATGTGCATCGCGGAGGACATCGCCGTGGTGGACGCCCCGCGCCTGGAGCGGCTATTGATTTGGGAGATGTTTGAGGATGACAACCATGCCACCAGATTGAGCATTGGCCATGCCCCCAATCTACAGTTGCTGGGATACTTGAGGCCAGGAATACATGTCCTGGAGAACGGCAACACCATCATCAAGGTGCACGCGCCTGCGCTTTTGATCCAATTCCGTTCAACAATCGTGAGTAGTAGGTCTAATTAAGATATCCTGATCAGTGATGTTTGATGCTTGCATTGCATAATTGCAGGCTGGGACAAAGGCGAGCCCAAGAACCATCATCCCAAGCATCAATGTATTGGCCTTGAAGGTGCGTTTTGAAGTCCGCAATGAAGCCAAGTTGCTGCCTAGCTTCCTGAGATGCTTTCCCAATGTCGAGAAGCTGCACGTCAAGGTGAATTTACCCTTTGATTCATTGGTTCGGCGCACATTTGCATCGTGTCGTTAACTTTTGATTGATTGCTGCTAGGATCATTTGTCCTTCGATAGCCTTGTCATCGCAGATGTGCAGCCAGATTGTTTATTCCTTTATCTAAGAAATACAAATTGATTGTCCATCACTATCTAGCTGAGCCACCAATCGATTTCTTTTGCAGTCCGAGAAATCAGATGAACCGGTTGGCAGGCTCAACCTCAAGTTCTGGCAGGAGGCTGGTCGCATAGAATGCTTGCAATCGTGCATCAAGTATGTGGTTTTCCATGGGTACCGAGGGGATCGTAGCGAGCTCACCTTCCTGAAGTACATCCTGGGAAGTGGACAGGTGCTGCAGGAGATGGTGATCGTGGTCGCGAATGGAATGTTCTCCACACAGGATGAGGTGGGCGAGAAACTGGTGAAGCCTCTGAGTTCTGTCAAGATGGCCAGTGGAGACTGTAATATAACGGTCGTTGAGGGCACAGTTCATGATGAAGAAGATTCTTGTTGCCTCCGTGATGCGTTTGATTTTTCTATCGATGACCCCTTTGATCGCTACTTATAGGGAACTCAATGCTGCCTGTGTTTGATCGTCAAGTGGTTTCTGCATTGTGCACCCTAATTTGATTGTGCAGATACCTGCCAGTCAGATATTATATGATTCATGCAGTCACTCTGATAATCTCTGTATGTTTTCTTCTACTGCGTGTGC
More
|
||||||||||
| CDS seq | ATGGATTACCGGGCGCTCATGACGATGGAGAAGGTCCTTGTTCAGATGGAGAAGGACGGCGTGGACTCGCGGATGCTGGACCTCGGCGCCGACTGCATGTGCAAACTCCTCGTGGCATCCCTCCCCGACCCGCCCGTCTACCCCGACGCCGTCCTCTCGGCCAACGACGACGACGACTTGTCCGGCGCCGGCGCCGAGGACCGCATCGGCGCGCTCCCCGACGACCTCCTCGGCGGCGTCGTCTCCCGCCTCCCTATCAAGGACGCCGTGCGCACCGCCGCGCTGTCTTCACGGTGGCGCCGCATCTGGCTCTCCGCGCCGCTCGTCCTCGTCGACGGCCACCTCCTCCCGCCGGGCGAGGAGGCGGGCCAACTCGCGCTCGACGCCAGCGGCGCCGTCGCCGCCGCGGTGTCGCGCGTCCTCGAGGCCCACCCGGGCCCCTTCCGCTACGTCGAGCTCACCTCCACCGCCATGGGGGCTCGCGCTCGCCGCGGCGACCTCGCGCGCTGGCTCCACCTCCTCGCCGTCAAGGGCGTCCGCGAGCTCGTCTTCGTGAACCGCCGCAGGCCCTTGGACGTCGCCCTCCCCGCCACGGTGTTCGCCCTCGCGCCCCTCAGCCGCCTCTACCTCGGCACCTGGAAGTTCCCGGACACCGCCGCCCTCCCGCGCGGCGCCGGCTTCCCCCACCTCCGGGAGCTCGGCCTCTACTGCGTCGCCATGGAGGACCGGGACCTCGACTTCGTCCTCGCCAACAGCCCCGTCCTGGAGTGCCTCGGCATCTACTACAGCCAGAGGCAGATTGTGCTCCTCCGCCTCGCCAGCCACAGCCTGCGGTGCGTGCAGATCTGCATGTGCATCGCGGAGGACATCGCCGTGGTGGACGCCCCGCGCCTGGAGCGGCTATTGATTTGGGAGATGTTTGAGGATGACAACCATGCCACCAGATTGAGCATTGGCCATGCCCCCAATCTACAGTTGCTGGGATACTTGAGGCCAGGAATACATGTCCTGGAGAACGGCAACACCATCATCAAGGCTGGGACAAAGGCGAGCCCAAGAACCATCATCCCAAGCATCAATGTATTGGCCTTGAAGGTGCGTTTTGAAGTCCGCAATGAAGCCAAGTTGCTGCCTAGCTTCCTGAGATGCTTTCCCAATGTCGAGAAGCTGCACGTCAAGTCCGAGAAATCAGATGAACCGGTTGGCAGGCTCAACCTCAAGTTCTGGCAGGAGGCTGGTCGCATAGAATGCTTGCAATCGTGCATCAAGTATGTGGTTTTCCATGGGTACCGAGGGGATCGTAGCGAGCTCACCTTCCTGAAGTACATCCTGGGAAGTGGACAGGTGCTGCAGGAGATGGTGATCGTGGTCGCGAATGGAATGTTCTCCACACAGGATGAGGTGGGCGAGAAACTGGTGAAGCCTCTGAGTTCTGTCAAGATGGCCAGTGGAGACTGTAATATAACGGTCGTTGAGGGCACAGTTCATGATGAAGAAGATTCTTGTTGCCTCCGTGATGCGTTTGATTTTTCTATCGATGACCCCTTTGATCGCTACTTATAG
More
|
||||||||||
| Protein seq | MDYRALMTMEKVLVQMEKDGVDSRMLDLGADCMCKLLVASLPDPPVYPDAVLSANDDDDLSGAGAEDRIGALPDDLLGGVVSRLPIKDAVRTAALSSRWRRIWLSAPLVLVDGHLLPPGEEAGQLALDASGAVAAAVSRVLEAHPGPFRYVELTSTAMGARARRGDLARWLHLLAVKGVRELVFVNRRRPLDVALPATVFALAPLSRLYLGTWKFPDTAALPRGAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIYYSQRQIVLLRLASHSLRCVQICMCIAEDIAVVDAPRLERLLIWEMFEDDNHATRLSIGHAPNLQLLGYLRPGIHVLENGNTIIKAGTKASPRTIIPSINVLALKVRFEVRNEAKLLPSFLRCFPNVEKLHVKSEKSDEPVGRLNLKFWQEAGRIECLQSCIKYVVFHGYRGDRSELTFLKYILGSGQVLQEMVIVVANGMFSTQDEVGEKLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRYL |
||||||||||
| Function | F-box/FBD/LRR-repeat protein At1g13570 [UniProtKB/Swiss-Prot:Q9FZ70] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0596100 | OsNip_01t0596100-01 | Chr01 | 23363801 | 23365877 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATTACCGGGCGCTCATGACGATGGAGAAGGTCCTTGTTCAGATGGAGAAGGACGGCGTGGACTCGCGGATGCTGGACCTCGGCGCCGACTGCATGTGCAAACTCCTCGTGGCATCCCTCCCCGACCCGCCCGTCTACCCCGACGCCGTCCTCTCGGCCAACGACGACGACGACTTGTCCGGCGCCGGCGCCGAGGACCGCATCGGCGCGCTCCCCGACGACCTCCTCGGCGGCGTCGTCTCCCGCCTCCCTATCAAGGACGCCGTGCGCACCGCCGCGCTGTCTTCACGGTGGCGCCGCATCTGGCTCTCCGCGCCGCTCGTCCTCGTCGACGGCCACCTCCTCCCGCCGGGCGAGGAGGCGGGCCAACTCGCGCTCGACGCCAGCGGCGCCGTCGCCGCCGCGGTGTCGCGCGTCCTCGAGGCCCACCCGGGCCCCTTCCGCTACGTCGAGCTCACCTCCACCGCCATGGGGGCTCGCGCTCGCCGCGGCGACCTCGCGCGCTGGCTCCACCTCCTCGCCGTCAAGGGCGTCCGCGAGCTCGTCTTCGTGAACCGCCGCAGGCCCTTGGACGTCGCCCTCCCCGCCACGGTGTTCGCCCTCGCGCCCCTCAGCCGCCTCTACCTCGGCACCTGGAAGTTCCCGGACACCGCCGCCCTCCCGCGCGGCGCCGGCTTCCCCCACCTCCGGGAGCTCGGCCTCTACTGCGTCGCCATGGAGGACCGGGACCTCGACTTCGTCCTCGCCAACAGCCCCGTCCTGGAGTGCCTCGGCATCTACTACAGCCAGAGGCAGATTGTGCTCCTCCGCCTCGCCAGCCACAGCCTGCGGTGCGTGCAGATCTGCATGTGCATCGCGGAGGACATCGCCGTGGTGGACGCCCCGCGCCTGGAGCGGCTATTGATTTGGGAGATGTTTGAGGATGACAACCATGCCACCAGATTGAGCATTGGCCATGCCCCCAATCTACAGTTGCTGGGATACTTGAGGCCAGGAATACATGTCCTGGAGAACGGCAACACCATCATCAAGGCTGGGACAAAGGCGAGCCCAAGAACCATCATCCCAAGCATCAATGTATTGGCCTTGAAGGTGCGTTTTGAAGTCCGCAATGAAGCCAAGTTGCTGCCTAGCTTCCTGAGATGCTTTCCCAATGTCGAGAAGCTGCACGTCAAGTCCGAGAAATCAGATGAACCGGTTGGCAGGCTCAACCTCAAGTTCTGGCAGGAGGCTGGTCGCATAGAATGCTTGCAATCGTGCATCAAGTATGTGGTTTTCCATGGGTACCGAGGGGATCGTAGCGAGCTCACCTTCCTGAAGTACATCCTGGGAAGTGGACAGGTGCTGCAGGAGATGGTGATCGTGGTCGCGAATGGAATGTTCTCCACACAGGATGAGGTGGGCGAGAAACTGGTGAAGCCTCTGAGTTCTGTCAAGATGGCCAGTGGAGACTGTAATATAACGGTCGTTGAGGGCACAGTTCATGATGAAGAAGATTCTTGTTGCCTCCGTGATGCGTTTGATTTTTCTATCGATGACCCCTTTGATCGCTACTTATAG
More
|
|||||||
| Protein seq | MDYRALMTMEKVLVQMEKDGVDSRMLDLGADCMCKLLVASLPDPPVYPDAVLSANDDDDLSGAGAEDRIGALPDDLLGGVVSRLPIKDAVRTAALSSRWRRIWLSAPLVLVDGHLLPPGEEAGQLALDASGAVAAAVSRVLEAHPGPFRYVELTSTAMGARARRGDLARWLHLLAVKGVRELVFVNRRRPLDVALPATVFALAPLSRLYLGTWKFPDTAALPRGAGFPHLRELGLYCVAMEDRDLDFVLANSPVLECLGIYYSQRQIVLLRLASHSLRCVQICMCIAEDIAVVDAPRLERLLIWEMFEDDNHATRLSIGHAPNLQLLGYLRPGIHVLENGNTIIKAGTKASPRTIIPSINVLALKVRFEVRNEAKLLPSFLRCFPNVEKLHVKSEKSDEPVGRLNLKFWQEAGRIECLQSCIKYVVFHGYRGDRSELTFLKYILGSGQVLQEMVIVVANGMFSTQDEVGEKLVKPLSSVKMASGDCNITVVEGTVHDEEDSCCLRDAFDFSIDDPFDRYL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g41290 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0596100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0023960 | RBH | 0.0 | 0.0 | 1.215576 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0023540 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0023860 | RBH | 0.0 | 0.0 | 0.195597 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0023240 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0022960 | RBH | 0.0 | 0.0 | 1.823979 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0391100 | RBH | 0.0177515 | 0.006455 | 1.2826135 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0022900 | RBH | 0.0 | 0.0 | 0.041483 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0380100 | RBH | 0.009159 | 0.022273 | 2.2337345 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0022900 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0022880 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0023120 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0023110 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0022990 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G023240 | RBH | 0.0 | 0.000000 | 0.362701 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0022910 | RBH | 0.0 | 0.0 | 0.000000 |
