Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0543600 | OGI:01021950 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:20124194-20126848 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GTTGCACTGCAACTCTGCAAGTAGCCATGGAACAAGCAGCTGGACTAGTGTACCAACTCTTCCAACACGAAATGTTTCCCTGGACCTTCTCTGTCCTAGCCTTGTTCCCTTTCCTTCTCCTAGTGCTGCACTACTTGGCAACAAATCATAGAACACCAACAACCTGCAAGGAAACGAAGAATCATCATCCTCCCCCACCTTCACCTCCGAGGCTGCCCATCATAGGGCACCTGCACCTCATCGGTGGCCTCCTGCACGTCTCTCTTCGTGAGCTCGCTCATCGGTACGGCCCCGACCTCATGCTCCTCCACCTCGGCCAAGTCCCGAACCTCATTGTCTCCTCCCCGCGCGCCGCAGAGGCTGTCTTGCGCACGCACGACCTTGTCTTCGCGTCACGGCCATACTCCTTGATCGCCGACATACTCCTTTACGGCCCGTCTGATGTCGGGCTTTCGCCTTACGGCGAGTAGTGGCGGAGGAGGATCATCACAACGCACCTGCTGACCAACAAGAAGGTGCGGTCGTACCGTGTAGCACGAGAAGAGGAGGTACATGATCTGCATACATATGATTGTAATACTCTTCTCACAAACACATAAACATATATACAGATCTAAAATGAAGTGAGGATTGAATATTATATCTAGATTGACGAGTGAATGACTATCTCAAAAAAAAAAAAGATGAAGAAGAAGCAGAGGATTGATTTTATATTGAGATATGGTAAGAGGGTACATCAAATTCTCTAGCCATATTGATTAATCAGCCTTTTTTCCAATAAAAACATATTTGATTATTTCAGTTAATGCATCACAGCACAAAAAAAAAGAGAGACCAAAATAAAAAATCCTTTTCTATTAATTTGGCATGGTTTTATATGTATGGATTTGACCGTAATATTGACGTGATCTTCGATCTATTAATTAGTCCTAACATTTAATTAAAAAAATTTAAAATCATATAGGGTTATAATCTGCAACTCAAACCAAGCAGGCAAAACTAAGACTTTATATATACAAATGTGTACATTAATTCTTTTAAAGTACTCCCTCCATTTTATATTATAAGTCGTTTGACTTTTCTTCCTAGTCTAACTTCTGTAAGTTGATCCAAGTTTATAGAAATATAAGTTTAACCAAATTTATAGAAAAATATAAGAACATTTTAAATAAAAATAAACATGTAATCAAAATATATTCAATATTAAATTTAATGAAACTAATTTAGTGTTGTAAATATTGCTAATTTTGCATACAAACTTGGTGAGACTAAAATAAGTTTGAATAAGGAAAAAATCAAACGACTTTAAATATTAGATGGATGGAGTACTTTTATCATATTTTAATTTGTATTTCGTTGGCAGGTGCATAAGGTAATGGCCAAAGTCCATGAGTTATCCACCAAGGGTATGGCAGTGGATATGACTGAGCTCTTCAGCACCTTCTCAAATGACCTCATATGCCGCCTTGTGTCGGGGAAGAACTTCCAAGGGGAAGGTCGAAACAAGCTGTTCCGTCAACTGTTCAAAGCAAATTCTGTACTCCTCGCAGGGTTTAACCTCAAGGACTACTACCCAGGCTTGGCAAGGCTCAAAGCTGTCTCAATGGTGATGTGTGCCAAGGCCAGGAACACGAGGAAGTTGTGGGATGAATTGCTCGACGAGATTATCGATGAGCGTATGAGCAAACAACAATGTGAGCATGATGAAGGCAATGATCAAGATGAGATGAACTTCGTAAATGTTTTGCTCCTTCAAGAGCAGGGCATCACCAGAGAACACCTTAAAGCAATTCTAGTTGTGAGTAAAGTAGTTTTCTCATTTTTTGTCTCGGACTTATTCACATCTCATAAATGTGATATATATTTGTCGAAATTAATTTACAGGACATGTATCAAGCCGGCACGGAGACGTCATCAGTGGTCTTAGTATTTGCCATGGCCGAGCTTATGCAGAAGCCACATCTCATGGCCAAGTTGCAAGCCGAACTAAGAACAACCATACCCAAGCAGGGACACGAATTGATTACTGAACGTGATCTTACCGACATGACCTACCTCAAGGCTGTCATCAAGGAGACGCTTCGGTTGCATCCACCAACTCCTCTTCTCCTCCCACATCTCGCGATGGCTGACTGCAATATTGACGGCTACACGGTTCGCTCGGGGACTCGTGTCATCGTCAATGCATGGGCTATTGGAAGGAACTCTGAATCTTGGGAAGCTGCAGAGGAGTTTTTGCCTGAGAGGTTTGTTGATGATGGAAGTGCGGCGAACGTAGACTTCATAGGGACAGACTTCCAGTTCTTACCGTTTGGCGCAGGGCGGCGGATCTGTCCTGGAATAAACTTTGCTTCTGCGAGCATGGAGATCATCCTAGCAAACCTTCTGTACCATTTTGACTGGGATGTTTCAGCTGAAGCAGCCATAGATAAAGATGGCATTGATATGGCTGAAGCATTCGGGTTGTCAGTGCAGCTAAAGGAAAAGCTACTGCTTGTACCGGTAGATTATAAGGATGGCATGCAGGATTCGGCTGTTATATTATTATAGGATTAGTTTCTGTTGTATTTATTTGGGATTACGTAAAATCCAAGTTATGTGACTCTATTTGTACAGTTGACCATGATAAAAAGAAAACTCAACCTCTTAAACATT
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| CDS seq | ATGGCCAAAGTCCATGAGTTATCCACCAAGGGTATGGCAGTGGATATGACTGAGCTCTTCAGCACCTTCTCAAATGACCTCATATGCCGCCTTGTGTCGGGGAAGAACTTCCAAGGGGAAGGTCGAAACAAGCTGTTCCGTCAACTGTTCAAAGCAAATTCTGTACTCCTCGCAGGGTTTAACCTCAAGGACTACTACCCAGGCTTGGCAAGGCTCAAAGCTGTCTCAATGGTGATGTGTGCCAAGGCCAGGAACACGAGGAAGTTGTGGGATGAATTGCTCGACGAGATTATCGATGAGCGTATGAGCAAACAACAATGTGAGCATGATGAAGGCAATGATCAAGATGAGATGAACTTCGTAAATGTTTTGCTCCTTCAAGAGCAGGGCATCACCAGAGAACACCTTAAAGCAATTCTAGTTGTGAGTAAAGTAGTTTTCTCATTTTTTGTCTCGGACTTATTCACATCTCATAAATGTGATATATATTTGTCGAAATTAATTTACAGGACATGTATCAAGCCGGCACGGAGACGTCATCAGTGGTCTTAG
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| Protein seq | MAKVHELSTKGMAVDMTELFSTFSNDLICRLVSGKNFQGEGRNKLFRQLFKANSVLLAGFNLKDYYPGLARLKAVSMVMCAKARNTRKLWDELLDEIIDERMSKQQCEHDEGNDQDEMNFVNVLLLQEQGITREHLKAILVVSKVVFSFFVSDLFTSHKCDIYLSKLIYRTCIKPARRRHQWS |
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| Function | indole-2-monooxygenase [UniProtKB/Swiss-Prot:Q43257] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0543600 | OsNip_01t0543600-01 | Chr01 | 20124194 | 20126848 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCAAAGTCCATGAGTTATCCACCAAGGGTATGGCAGTGGATATGACTGAGCTCTTCAGCACCTTCTCAAATGACCTCATATGCCGCCTTGTGTCGGGGAAGAACTTCCAAGGGGAAGGTCGAAACAAGCTGTTCCGTCAACTGTTCAAAGCAAATTCTGTACTCCTCGCAGGGTTTAACCTCAAGGACTACTACCCAGGCTTGGCAAGGCTCAAAGCTGTCTCAATGGTGATGTGTGCCAAGGCCAGGAACACGAGGAAGTTGTGGGATGAATTGCTCGACGAGATTATCGATGAGCGTATGAGCAAACAACAATGTGAGCATGATGAAGGCAATGATCAAGATGAGATGAACTTCGTAAATGTTTTGCTCCTTCAAGAGCAGGGCATCACCAGAGAACACCTTAAAGCAATTCTAGTTGTGAGTAAAGTAGTTTTCTCATTTTTTGTCTCGGACTTATTCACATCTCATAAATGTGATATATATTTGTCGAAATTAATTTACAGGACATGTATCAAGCCGGCACGGAGACGTCATCAGTGGTCTTAG
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| Protein seq | MAKVHELSTKGMAVDMTELFSTFSNDLICRLVSGKNFQGEGRNKLFRQLFKANSVLLAGFNLKDYYPGLARLKAVSMVMCAKARNTRKLWDELLDEIIDERMSKQQCEHDEGNDQDEMNFVNVLLLQEQGITREHLKAILVVSKVVFSFFVSDLFTSHKCDIYLSKLIYRTCIKPARRRHQWS |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.407052 | 0.986689 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0544200 | RBH | 0.000000 | 0.0 | 0.339235 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g36294 | RBH | 0.694386 | 1.365228 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0543600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0020680 | RBH | 0.799477 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0020290 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020620 | RBH | 7.763094 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0020010 | SBH | 1.017497 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0019900 | SBH | 1.082373 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0342800 | SBH | 2.0312415 | 0.4489845 | 0.023409 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019840 | RBH | 0.137242 | 0.0 | 0.051004 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0335300 | SBH | 0.124826 | 0 | 0.012649 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019860 | SBH | 0.100482 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0019760 | SBH | 1.042696 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0020010 | SBH | 18.712967 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0019910 | RBH | 0.148564 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0019810 | RBH | 0.679263 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G021350 | SBH | 3.455395 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0021080 | SBH | 4.725108 | 0.000000 | 0.0 |
