Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0521600 | OGI:01059670 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:18613736-18616526 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGAAATTAATGGCTGAAGCCGTGATTCTTTTAGCTGTGAAGAAGATTTGTGTTGCCTTGGGAAATGAAGCAATCAACCAAGCTACTTCAAAATTCAAAAAGTTTGTTTCGCAGATAACAGAGCTTCAAGGAAGCATGGGCCGCATCAAGAGGGAGCTCAGGCTGATACATCAATTCCTTTCTCGAATGGATGTACGCAATCGCAATAATGAGACGTATGAAATCTGGGTGGAAGAGATAAGAATGCTGGCACATGGAATTGAAGATACTGTGGATGATTACCTGCAACTTGTTTCCCATAAACATGATACTGGATGGAGTACCTATCTGAAGAAAGGATTCACACGACCAAATATTCTGCTCTCTTTAAACAAGATAGCATTGTCCATTAAGGATGCAGAAGCCAACCTGATGCACCTATTCTAGGCGAAAGACCGATGGGTTTCGATGGTAGGTGATGGTAATAATCCTAGTAATGACAGCTCAAATTACATTGTTGAGAGGTCCCAACATCTAGCAAGCATTTCACGCTCCCTTGGTGAAGAAGATCTTGTTGGGGTCAATCAAAATAGAGAAACACTTGAAGAGTGGCTGGCAGATGATTTGTTGGAACGTTCAGTAATTACGCTGCATGGAATGGGAGGGCTTGGAAAAACAGCCTTGGCAGCAAATGCATACATGAGGGAGAAAGAAAAGTTTCAGTGTCATGCATGGGTCTCGATTTCTCAATCTTACTGCATCAAGGATGTTCTAAAATGTTTGATCACTGAACTTTCCAGAAATGTGAAAAAGACTAATTGGGGTAACATTACTGACATGGATACTGGAGGTTTTCGTGAAGAGCTGAAGAGATTCCTAAAGCTCCAGAAGTGTTTGATCGTATTGGATGATGTTTGGGCGCCAGAAGTAATCAATGATTTGTTTGGAGCACATGTTCCTAATCTCAAAGGGAGCAGAATACTTGTGACAACACGTATCGATGATGTAGCTCAACTTGCTTTCCCAGACAGGAGAATAACATTAGAACCTCTATGTGAGAAGGAATCATGGGAACTCTTCTGTAGAACAGCTTTTCCAAGGGAGACAAATCATGAGTGCAATGCAGAACTGTTGCACTTGATAGATCAAATAGTTAGCAAGTGTAAGGGGGTTCCTCTGGCAATTGTCTCTATTGGCAGGCTTGTCTTTGTGCGTGACAAGACCAAAGAGGAACTGAGGAGAATACATGACCAGCTCGACTGGGAGTTAATAAATAATCCAAGCCTGGAACATGTCAGGAATATCCTTTACTTGAGCTACATTTACCTTCCAACACAGTTGAAAAGTTGTTTCCTATATTGCAGCTTGTTTCCGGAGGATCATCTTCTCAAAAGAAAGGCATTAATACGGTGGTGGATAGCGGAGGGATTCATCAGTAAGAGGGGTAGAAGCACAATGGAGGAAGTGGCTGAAGGGTATCTACAGGAATTGGTTAACAGGAACATGCTACAACTAATTGACAGGAATTCATTTGGCAGGATAAAATCATTCCGGATGCATGATATCATGCATGAGTTGGCGGTTGACTTGTGCCGAAGAGAATGTTTTGGCGTTGCATATGATGAAGATAATAGACGTTGGGAACATGAGGATAGAGATGAACGCCGATTGGTAGTACACAAACTTAATAAGGACATTGATCAAGAAATTTCTTGTGCGCATAGTCTTCGATCAGTCATTACATTGGATAATAGTATGATATCATCATCCAGCATACTATGTCTAGTAGTGGACAATTGCAGATATATGTCAATACTGGAGTTAAGTGGGCTACCCATCAGCACGGTTCCAGATGCTATTGGAGATCTATTCAATCTCCGCCATTTAGGTCTTCGTGGTTCAAATGTGAAGTTTCTCCCAAAGTCTATCGAGAAGCTAACCAACCTGTTAACACTAGACCTCTTCAGATCTAGCATACTGGAGCTTCCTAGAGGCATTGTCAAGCTGACAAAGCTTAGGCACTTGTTTGCTGAGAAACAGACTGATCGACATCGGCGCCTTTTCAGGTGGTGCACTGGTGTAAGCATCCCCAGGGGCCTTGAGAACTTGACAAGCCTACAATCCCTACAAGCACTGGAAGCTCAGGATGAGTCTGTTAGATGCTTAGGAGAGCTCAGGCAGATGAGAGGTCTCAGATTATGGAAAGTGAAGGCAAGCCTCTGTGAACGCCTCTATGAGTCGCTGCTTCAGATGAAATGTTTGTCCTACCTAAGTATCACGGCAAGTGATGAGGATGATGTTCTCCAGTTGGATGGCTTGAACCCCCTTCCTCCAAGCCTTCATAAACTACGTTTAAGTGGACGATTGGCACACACCATGTTGGGTGCAGAGTCTCCTCTATTCCAAGAAGATGCCGGGGGACGAAATCTGTACTCGTTGCGCCTATTTTGGTCCCAACTAAAAGAGGATCCCTTGCCATCCCTTTCTCGGTTGTTAAATCTAACAGAGCTACATTTCACCAGAGCCTACAACGGAGAGAAGCTGGTCTTCCTTACTAGATGGTTTCCCAAGCTGAAGGTTCTACGTTTAAGAGACTTGCCTAATCTAAAGAGGATGGATATTCAGCAAGGTGCCATGGTGAGCCTTGAAAGATTAAGACTAATAAACCTAAGCAGCATGGAAGAGGTCCCTCTAGGCATTGAGTTTCTCATGCCCCTCAAATATCTAAGCTTCGAGGAGATCACTGTTGACTTCTTACTGTCATTGCGCCAATCTAGAATTGGTGGTATGCGATGGTGGCACACTTTACGAGA
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| CDS seq | ATGGCTGAAGCCGTGATTCTTTTAGCTGTGAAGAAGATTTGTGTTGCCTTGGGAAATGAAGCAATCAACCAAGCTACTTCAAAATTCAAAAAGTTTGTTTCGCAGATAACAGAGCTTCAAGGAAGCATGGGCCGCATCAAGAGGGAGCTCAGGCTGATACATCAATTCCTTTCTCGAATGGATGTACGCAATCGCAATAATGAGACGTATGAAATCTGGGTGGAAGAGATAAGAATGCTGGCACATGGAATTGAAGATACTGTGGATGATTACCTGCAACTTGTTTCCCATAAACATGATACTGGATGGAGTACCTATCTGAAGAAAGGATTCACACGACCAAATATTCTGCTCTCTTTAAACAAGATAGCATTGTCCATTAAGGATGCAGAAGCCAACCTGATGCACCTATTCTAG
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| Protein seq | MAEAVILLAVKKICVALGNEAINQATSKFKKFVSQITELQGSMGRIKRELRLIHQFLSRMDVRNRNNETYEIWVEEIRMLAHGIEDTVDDYLQLVSHKHDTGWSTYLKKGFTRPNILLSLNKIALSIKDAEANLMHLF |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0521600 | OsNip_01t0521600-00 | Chr01 | 18613736 | 18616526 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCTGAAGCCGTGATTCTTTTAGCTGTGAAGAAGATTTGTGTTGCCTTGGGAAATGAAGCAATCAACCAAGCTACTTCAAAATTCAAAAAGTTTGTTTCGCAGATAACAGAGCTTCAAGGAAGCATGGGCCGCATCAAGAGGGAGCTCAGGCTGATACATCAATTCCTTTCTCGAATGGATGTACGCAATCGCAATAATGAGACGTATGAAATCTGGGTGGAAGAGATAAGAATGCTGGCACATGGAATTGAAGATACTGTGGATGATTACCTGCAACTTGTTTCCCATAAACATGATACTGGATGGAGTACCTATCTGAAGAAAGGATTCACACGACCAAATATTCTGCTCTCTTTAAACAAGATAGCATTGTCCATTAAGGATGCAGAAGCCAACCTGATGCACCTATTCTAG
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| Protein seq | MAEAVILLAVKKICVALGNEAINQATSKFKKFVSQITELQGSMGRIKRELRLIHQFLSRMDVRNRNNETYEIWVEEIRMLAHGIEDTVDDYLQLVSHKHDTGWSTYLKKGFTRPNILLSLNKIALSIKDAEANLMHLF |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_10g0358200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g33810 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0521600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0019700 | RBH | 0.0 | 4.203445 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019340 | RBH | 0.0 | 1.142740 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0020830 | SBH | 0.555691 | 9.497241 | 8.178088 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0019040 | RBH | 0.0 | 0.068358 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018960 | RBH | 0.0 | 4.271411 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0317300 | RBH | 8.845189 | 31.552307 | 41.6285115 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0019020 | RBH | 0.0 | 0.083150 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_10G0203100 | SBH | 0.014198 | 0.006717 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0019010 | RBH | 0.0 | 0.129541 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018930 | RBH | 0.0 | 3.178062 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0019190 | RBH | 0.0 | 2.243879 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0018930 | RBH | 0.0 | 0.172231 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0018860 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019340 | RBH | 0.0 | 0.344338 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0019050 | RBH | 0.0 | 12.793551 | 0.0 |
