Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0518400 | OGI:01058980 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:18390223-18394126 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAACACCAATCCGATCGAAGGTCTCTCCCTCGTCTCTCCTCGGCACCAACTGCAGTCTGCAGATCGATCTCGCTCGCTCGCTCGCTAGGGTTTTGTCTCGATCGGGCGGGGCCTGTCTCTTCCTTGTTGGGCCGAGCCCGCGACACGACCTCGACTCCCCCCGACCTCCGCCCAAGGTGAGGTGATCCGCCTCGCCTCGCCTCGCCACCTCTCTCTCTCTCTCTGTCCCTTCCTCCGTGCGCTGCGCTCTCTTCTGCCGTTCGCATGGTCGACGAATTCCAGTGGTTTTACTATTCGAGGGGTTTGGTTTTGTGTTGTTGTTGGGGGGTGGTTTGGGTTTCTGTGTTTTGGTAGATCGTGTGTGTTGAGGCGTGATGTGGGGGGAGGCGGAGGGGCAGCCAGGGGAGGGGGGGCCTTCGTTTCTTTCCTAAATTCGTGGGTGCGGCTAGCTGCTTGTGTGTTTTTGTGGATTTCATAGGTTTATTTATCATGTTCATGCTTCTCTCCTGTGGAACCTGTAGAATGTTATTATGATTCTGGTGAGTAAACCAGCCGCGCTTGTCACGGTAATGTTGTCTTCTGCTAACTGCGGTTGCCTTGGTTGGATGCTTTAGTATATTTCTTTGGCGGAAATTGCTGAATCTTTTAGTTATGTTGTTTAAATTTGCTGTATCCCACGGCTGATAGACTCGACTTGTGTTTAATTTGCTACTGGTGACCGTCAGATATGTGTTTTGTTTTCTGCAAGATGAGATGGGTTTGTTCCATAGCTCTCTCTTTTTTTTCTATATCAAAATTACAGGATTCATTGAGTGTCTTTTTCTTTTTCTTTTTTTTTTGAAATATCTTGACTAACTTCATATATTTGCTTTCCTTGAGCATTGTTCAGTTAATTCCTTCCAAAAGATAATTGAGAGGGATTTTGAGAGGACTTATTTCACACCCCCTCAATCCCCTCCAAACCCTTCGTCTTGGGGATTAAACGAACAATCCCTTATTGATATTGGTTACACGTATCCAATAAACAAGTTGAAGTTGTGACAAGCTCTGATTTAATTGTCTACCACGCGTCAGGGAATTTGCATATATTCTAGAAAACTTCAAAACCTGTGCTTACACTTGATCAGTTCAGGGATAGTTCGTAGCGTATCGCTTAGATTCTGCCGGCGCCGATGCATATGTAACGGTACGTCCATAGTATCGGAAAAGATTTACATGTGCCAGCCATTATTTGTCGGTTGAATTTTCTGCTCTTGTAGTTTTGTGTACTTTATCTGTTGCAAGTTGCAACAGATCCCTGAGGTTTTCCATTTGCAATCTATCGGTGAATTTAACTTTTTGCTGACTATAGCCAAATGCTTGTTCACAGTGATCCCAATGAAGAAGATGCTTGTTCATTGCGAGGCATTATGATTTGTACATGATCTTTTTGACAACCACTTATGACTTTGCAAATTAAACATACAAGTCCAAATTAGTGTTGTCTAAATCATATTTTTAAAATGAACTGTATGATGATGATCTTGTTTATAACCTGGCACATCACTTAAATTTTGTCACCCTTTCTGTTATGCTTTTTGTGAAACACTGACACTCTGACAGATTGTGGCATCATTCCCAAACGTTTTTTTTACAAACTGATTATTGCTATGATCTGACTGACATGGTTTTGTTTGTGCGAACTTCTTAAATGACAGGATTTTAGGTTGTAGCAGTAAAAGCCTCCCCACATGGATGAGATGATACCTAAGCCTTTGATCAGCAATGACAATGAGATGATGCACGGCCATGGCTATACCACTATGGTCCACGGTAACAACGAGATACTCAATGGTAACGAGCTTGCCGTTCATGCCGAGGTGATACCATCAGCCAGCACAAGAGGCCAGAAGAGAAAGTCAGCAATTTGGGAACACTTCACTCTTGTAGATGTCTCTGACGGGTGCAAACGAGCAAGCTGCATACATTGCAACCAGTCCTTAGCATACAGTTCAGGCTCAAAGAATTCAGGTACTAGCCATCTCACCAGGCACATTGCAGAATGGTGCCGTGTGTTAAAAGATCGGCAAAAGAGCAGGCGCTACACTACATATAATAGCAGCAACGAAAATGCTTCATTTGACCAAGAACGTAGTTGCTTACGATTGGCGAAGATGATCATTCTGAATGACTATCCACTTCACATCGTTCAGCAGCCAGCCTTCCTATCTTTTGTTGATAGTGTACAACCCAATTTCAAGATGGTTGACATTGGTACAATTGAAACTGAGGTGTATGCTATTTATCTCAAGGAAAAGGATCACCTGCAGCAAGCACTTGCAAATATTCCTGGAAGGATCAGCCTCACTGTAGGGTCATTGACCACAAACCAAAGTATTAGGTACATCTCACTTGCTGCACAATTCATTGACTCGGAATGGAGGCTGCATAGAAGAGTGCTCAAAGTCATGATGGCACCTTGGCCTCAGTCAGAGAATGCAGTTAGTAGAGCCATCATCAAGTGCCTCTCTGATTGGAACATGCAGGACAAGCTGTTCACCATCACCTTGGAGCACGATTGCTCGTCGCACGATATTTATAGCGCAAATCTGAGAAACCATCTCTCAGGTGACAACATTCTCATGCTGAAGGGCCAGACCTTTGCTGTGAGGTGCTATGCCAACATTCTAAATGCAGTTGCACATGGTGTCCTTGCTTCAGTTCACAACGTCATCTACCTCATCCGTGAGAGTATAAAGTTCATAAAAGCCGATGATGCCCATGAGAACAAGTTTGCAGAGATTGCCGTGGAACTGAAGATCACTAGTAACAATAGCCTGTGCTTGGATGTTACATCCGAGTGGAACACCACTTATCTGATGCTGTTGGCTGCCCTGGACTACAGACAGGTGTTCACTCTACTGGAGTCTTACTATGACAACTACGGTACAGCGCCTTCGACGGAGGACTGGAAGAAAGTTGAGGCCGCGTGTGGCTTCTTGAAGCTACTATATGCGTTCACGCTTAACATCATGTCAGCAGAAGGAAACCATCAAACTGCAAACATGTTCTTCCATGACGCATGGGTCCTTCAGCTAGAGCTTCAAAATGGCATGGCTCATGGAGATGACGTTATCCGTGGCATTGTGATCGGCATCCACGAGAAGTTTGACAAGTACTGGAAGGACTGCAACGTCGTCTTGGCCATTGCCGTTGCCATGGATCCACGCTTCAAGATGAAGATGGTCGAGTTCGCCTACTCCAAAATCTATGGCCCAACAGATGCAGCCAAGTATGTCAAGTTGGTAGACGATGCTATCCTTGACCTCTACAAGGAGTACGCTGCGCAGCCTGAGCTACTCCCATTGTCACCGATCTACGTCGACCAAGTGCCAGCTGACGGTCTGCCTTTTATCGAGACCGGCGGCGCTCCGGCGACGGCTTCACCGTCGACGGCGGCGGCTGGCGCTGGGCTCGTGGACTTTGACATGTACCTGTCGGAGGTGACCACCATGGGCCAACCGTTCAAGCACGAGCTGGAGCTCTATCTGGAAGAGGCCCTCACCCAGCGCACCCCGGATTTCGACGTCCTGAAATGGTGGCAGGACAACACGCTCAAGTACCCGACGTTGTCGAGGATGGCACGGGACGTGTTGGCCATCCCGATGTCCACGGTCGGCGTCGGCAGCTCGGTTTTCTTACCTGACAATGGAAGCAGGAGCCTCGACGACTACCGGAGCTCACTGCGCCCTGAACTCGTGGAGGCTCTCCTCTGCGCCAAGGACTGGCTCCAGTATTCGCCATGAAATCCGTAATGTAATTAGTACTCCCAGTCCCATGTGAAGATGGCAAGCCATTATTCGCGTAGAGCTTATGGAATTAAACGTGTTGATACTAACTGAGAGCTCCTGAGCTCCTGGTTTTT
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| CDS seq | ATGGATGAGATGATACCTAAGCCTTTGATCAGCAATGACAATGAGATGATGCACGGCCATGGCTATACCACTATGGTCCACGGTAACAACGAGATACTCAATGGTAACGAGCTTGCCGTTCATGCCGAGGTGATACCATCAGCCAGCACAAGAGGCCAGAAGAGAAAGTCAGCAATTTGGGAACACTTCACTCTTGTAGATGTCTCTGACGGGTGCAAACGAGCAAGCTGCATACATTGCAACCAGTCCTTAGCATACAGTTCAGGCTCAAAGAATTCAGGTACTAGCCATCTCACCAGGCACATTGCAGAATGGTGCCGTGTGTTAAAAGATCGGCAAAAGAGCAGGCGCTACACTACATATAATAGCAGCAACGAAAATGCTTCATTTGACCAAGAACGTAGTTGCTTACGATTGGCGAAGATGATCATTCTGAATGACTATCCACTTCACATCGTTCAGCAGCCAGCCTTCCTATCTTTTGTTGATAGTGTACAACCCAATTTCAAGATGGTTGACATTGGTACAATTGAAACTGAGGTGTATGCTATTTATCTCAAGGAAAAGGATCACCTGCAGCAAGCACTTGCAAATATTCCTGGAAGGATCAGCCTCACTGTAGGGTCATTGACCACAAACCAAAGTATTAGGTACATCTCACTTGCTGCACAATTCATTGACTCGGAATGGAGGCTGCATAGAAGAGTGCTCAAAGTCATGATGGCACCTTGGCCTCAGTCAGAGAATGCAGTTAGTAGAGCCATCATCAAGTGCCTCTCTGATTGGAACATGCAGGACAAGCTGTTCACCATCACCTTGGAGCACGATTGCTCGTCGCACGATATTTATAGCGCAAATCTGAGAAACCATCTCTCAGGTGACAACATTCTCATGCTGAAGGGCCAGACCTTTGCTGTGAGGTGCTATGCCAACATTCTAAATGCAGTTGCACATGGTGTCCTTGCTTCAGTTCACAACGTCATCTACCTCATCCGTGAGAGTATAAAGTTCATAAAAGCCGATGATGCCCATGAGAACAAGTTTGCAGAGATTGCCGTGGAACTGAAGATCACTAGTAACAATAGCCTGTGCTTGGATGTTACATCCGAGTGGAACACCACTTATCTGATGCTGTTGGCTGCCCTGGACTACAGACAGGTGTTCACTCTACTGGAGTCTTACTATGACAACTACGGTACAGCGCCTTCGACGGAGGACTGGAAGAAAGTTGAGGCCGCGTGTGGCTTCTTGAAGCTACTATATGCGTTCACGCTTAACATCATGTCAGCAGAAGGAAACCATCAAACTGCAAACATGTTCTTCCATGACGCATGGGTCCTTCAGCTAGAGCTTCAAAATGGCATGGCTCATGGAGATGACGTTATCCGTGGCATTGTGATCGGCATCCACGAGAAGTTTGACAAGTACTGGAAGGACTGCAACGTCGTCTTGGCCATTGCCGTTGCCATGGATCCACGCTTCAAGATGAAGATGGTCGAGTTCGCCTACTCCAAAATCTATGGCCCAACAGATGCAGCCAAGTATGTCAAGTTGGTAGACGATGCTATCCTTGACCTCTACAAGGAGTACGCTGCGCAGCCTGAGCTACTCCCATTGTCACCGATCTACGTCGACCAAGTGCCAGCTGACGGTCTGCCTTTTATCGAGACCGGCGGCGCTCCGGCGACGGCTTCACCGTCGACGGCGGCGGCTGGCGCTGGGCTCGTGGACTTTGACATGTACCTGTCGGAGGTGACCACCATGGGCCAACCGTTCAAGCACGAGCTGGAGCTCTATCTGGAAGAGGCCCTCACCCAGCGCACCCCGGATTTCGACGTCCTGAAATGGTGGCAGGACAACACGCTCAAGTACCCGACGTTGTCGAGGATGGCACGGGACGTGTTGGCCATCCCGATGTCCACGGTCGGCGTCGGCAGCTCGGTTTTCTTACCTGACAATGGAAGCAGGAGCCTCGACGACTACCGGAGCTCACTGCGCCCTGAACTCGTGGAGGCTCTCCTCTGCGCCAAGGACTGGCTCCAGTATTCGCCATGA
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| Protein seq | MDEMIPKPLISNDNEMMHGHGYTTMVHGNNEILNGNELAVHAEVIPSASTRGQKRKSAIWEHFTLVDVSDGCKRASCIHCNQSLAYSSGSKNSGTSHLTRHIAEWCRVLKDRQKSRRYTTYNSSNENASFDQERSCLRLAKMIILNDYPLHIVQQPAFLSFVDSVQPNFKMVDIGTIETEVYAIYLKEKDHLQQALANIPGRISLTVGSLTTNQSIRYISLAAQFIDSEWRLHRRVLKVMMAPWPQSENAVSRAIIKCLSDWNMQDKLFTITLEHDCSSHDIYSANLRNHLSGDNILMLKGQTFAVRCYANILNAVAHGVLASVHNVIYLIRESIKFIKADDAHENKFAEIAVELKITSNNSLCLDVTSEWNTTYLMLLAALDYRQVFTLLESYYDNYGTAPSTEDWKKVEAACGFLKLLYAFTLNIMSAEGNHQTANMFFHDAWVLQLELQNGMAHGDDVIRGIVIGIHEKFDKYWKDCNVVLAIAVAMDPRFKMKMVEFAYSKIYGPTDAAKYVKLVDDAILDLYKEYAAQPELLPLSPIYVDQVPADGLPFIETGGAPATASPSTAAAGAGLVDFDMYLSEVTTMGQPFKHELELYLEEALTQRTPDFDVLKWWQDNTLKYPTLSRMARDVLAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVEALLCAKDWLQYSP |
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| Function | Zinc finger BED domain-containing protein RICESLEEPER 4 [UniProtKB/Swiss-Prot:Q0JMB2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0518400 | OsNip_01t0518400-01 | Chr01 | 18390223 | 18394126 | + | RAP2018-11-26 | ||
| CDS seq | ATGGATGAGATGATACCTAAGCCTTTGATCAGCAATGACAATGAGATGATGCACGGCCATGGCTATACCACTATGGTCCACGGTAACAACGAGATACTCAATGGTAACGAGCTTGCCGTTCATGCCGAGGTGATACCATCAGCCAGCACAAGAGGCCAGAAGAGAAAGTCAGCAATTTGGGAACACTTCACTCTTGTAGATGTCTCTGACGGGTGCAAACGAGCAAGCTGCATACATTGCAACCAGTCCTTAGCATACAGTTCAGGCTCAAAGAATTCAGGTACTAGCCATCTCACCAGGCACATTGCAGAATGGTGCCGTGTGTTAAAAGATCGGCAAAAGAGCAGGCGCTACACTACATATAATAGCAGCAACGAAAATGCTTCATTTGACCAAGAACGTAGTTGCTTACGATTGGCGAAGATGATCATTCTGAATGACTATCCACTTCACATCGTTCAGCAGCCAGCCTTCCTATCTTTTGTTGATAGTGTACAACCCAATTTCAAGATGGTTGACATTGGTACAATTGAAACTGAGGTGTATGCTATTTATCTCAAGGAAAAGGATCACCTGCAGCAAGCACTTGCAAATATTCCTGGAAGGATCAGCCTCACTGTAGGGTCATTGACCACAAACCAAAGTATTAGGTACATCTCACTTGCTGCACAATTCATTGACTCGGAATGGAGGCTGCATAGAAGAGTGCTCAAAGTCATGATGGCACCTTGGCCTCAGTCAGAGAATGCAGTTAGTAGAGCCATCATCAAGTGCCTCTCTGATTGGAACATGCAGGACAAGCTGTTCACCATCACCTTGGAGCACGATTGCTCGTCGCACGATATTTATAGCGCAAATCTGAGAAACCATCTCTCAGGTGACAACATTCTCATGCTGAAGGGCCAGACCTTTGCTGTGAGGTGCTATGCCAACATTCTAAATGCAGTTGCACATGGTGTCCTTGCTTCAGTTCACAACGTCATCTACCTCATCCGTGAGAGTATAAAGTTCATAAAAGCCGATGATGCCCATGAGAACAAGTTTGCAGAGATTGCCGTGGAACTGAAGATCACTAGTAACAATAGCCTGTGCTTGGATGTTACATCCGAGTGGAACACCACTTATCTGATGCTGTTGGCTGCCCTGGACTACAGACAGGTGTTCACTCTACTGGAGTCTTACTATGACAACTACGGTACAGCGCCTTCGACGGAGGACTGGAAGAAAGTTGAGGCCGCGTGTGGCTTCTTGAAGCTACTATATGCGTTCACGCTTAACATCATGTCAGCAGAAGGAAACCATCAAACTGCAAACATGTTCTTCCATGACGCATGGGTCCTTCAGCTAGAGCTTCAAAATGGCATGGCTCATGGAGATGACGTTATCCGTGGCATTGTGATCGGCATCCACGAGAAGTTTGACAAGTACTGGAAGGACTGCAACGTCGTCTTGGCCATTGCCGTTGCCATGGATCCACGCTTCAAGATGAAGATGGTCGAGTTCGCCTACTCCAAAATCTATGGCCCAACAGATGCAGCCAAGTATGTCAAGTTGGTAGACGATGCTATCCTTGACCTCTACAAGGAGTACGCTGCGCAGCCTGAGCTACTCCCATTGTCACCGATCTACGTCGACCAAGTGCCAGCTGACGGTCTGCCTTTTATCGAGACCGGCGGCGCTCCGGCGACGGCTTCACCGTCGACGGCGGCGGCTGGCGCTGGGCTCGTGGACTTTGACATGTACCTGTCGGAGGTGACCACCATGGGCCAACCGTTCAAGCACGAGCTGGAGCTCTATCTGGAAGAGGCCCTCACCCAGCGCACCCCGGATTTCGACGTCCTGAAATGGTGGCAGGACAACACGCTCAAGTACCCGACGTTGTCGAGGATGGCACGGGACGTGTTGGCCATCCCGATGTCCACGGTCGGCGTCGGCAGCTCGGTTTTCTTACCTGACAATGGAAGCAGGAGCCTCGACGACTACCGGAGCTCACTGCGCCCTGAACTCGTGGAGGCTCTCCTCTGCGCCAAGGACTGGCTCCAGTATTCGCCATGA
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| Protein seq | MDEMIPKPLISNDNEMMHGHGYTTMVHGNNEILNGNELAVHAEVIPSASTRGQKRKSAIWEHFTLVDVSDGCKRASCIHCNQSLAYSSGSKNSGTSHLTRHIAEWCRVLKDRQKSRRYTTYNSSNENASFDQERSCLRLAKMIILNDYPLHIVQQPAFLSFVDSVQPNFKMVDIGTIETEVYAIYLKEKDHLQQALANIPGRISLTVGSLTTNQSIRYISLAAQFIDSEWRLHRRVLKVMMAPWPQSENAVSRAIIKCLSDWNMQDKLFTITLEHDCSSHDIYSANLRNHLSGDNILMLKGQTFAVRCYANILNAVAHGVLASVHNVIYLIRESIKFIKADDAHENKFAEIAVELKITSNNSLCLDVTSEWNTTYLMLLAALDYRQVFTLLESYYDNYGTAPSTEDWKKVEAACGFLKLLYAFTLNIMSAEGNHQTANMFFHDAWVLQLELQNGMAHGDDVIRGIVIGIHEKFDKYWKDCNVVLAIAVAMDPRFKMKMVEFAYSKIYGPTDAAKYVKLVDDAILDLYKEYAAQPELLPLSPIYVDQVPADGLPFIETGGAPATASPSTAAAGAGLVDFDMYLSEVTTMGQPFKHELELYLEEALTQRTPDFDVLKWWQDNTLKYPTLSRMARDVLAIPMSTVGVGSSVFLPDNGSRSLDDYRSSLRPELVEALLCAKDWLQYSP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.102452 | 0.105067 | 0.751217 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g33410 | RBH | 0.069139 | 0.070519 | 0.192973 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0518400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0019470 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0019100 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0019400 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0018780 | RBH | 0.018874 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0018720 | RBH | 1.553418 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0314700 | RBH | 0.1268685 | 0.2802285 | 0.3385475 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0018780 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0312800 | RBH | 0.212777 | 0.2464825 | 1.6732105 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0018740 | RBH | 0.013257 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0018660 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0018910 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0018690 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0018580 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G019080 | RBH | 0.0 | 1.653210 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0018790 | RBH | 0.0 | 0.0 | 0.0 |
