Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0379800 | OGI:07015400 | 3/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:15798713-15802130 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AGCAGCACACTATCCATTCCAACTTCGAAGCGCTCACTCTCCAGCTGCAAGAAAAGTGGAGGCGGCCGGTGGCGGCGGCGCAGAGGCGTCCGGCGGCGGCGGTGGCTTCAAGCGGATCGACCAACGCAGGCGGCTCGTGGAGGCGACCGGCGCCGGCTGCTGCTTCGAGCGGGCGTCCAACCAGCGGCGGCGGCTTTGAAGGCAGCTGAGCAGCGGCGCAAGTCCGACGAGGAGGTCCGTCAGTGCAACGTCTCCGAAGCACTGAAGCAGCAGCACCAAAGGTGACAGCATGGCACAACAATCCGGTCAGTTCTCACATTCTCCTCTCTTTTTTGCTTGTATGTTGCAGATCTTACAATATGTGAACAAGTTGTCCATATTTGTTACCTCTAATTTCAGATACTTGCCTTATGATGTAGATCTTACTATATGTGAATTATTTTCTTACTCCATGAGATCTCTCGTTTGCTTGTTTCGCCTGTTTAGGTGGTAATGATAATACGTGCTATATCAGTTTGCATTATTTTGATGCTTAGGCAGCTTTGACGCTAGCATTAATGTGGGCTAAGTTTGCTTTTTGTATAGGTAATCCGTCCAGTGCTGCCTCTGTCTCAGTAGAAGCTGGACCAAAACAAGCTGGTATCAACTCAGATGATCCTGCATGGGCTCATTGTTTTTGCCCAGACATAACCAAGAAACATCACCTACGGTGCAAGTATTGTGACAAGGTCTGCACTGCTGGAATTACAAGAATTAAGTACCATCTTGCTGGAATTAAAGGTTTCAATACTACTAAGTGTCAGAAAGTTCCAAGTCCAGTGCAGCAAGAGATGTTTGATTTGCTTACCAAGAAGACTAGTGAAAAGGAACAGAAAAACAAAGAAAAGGAAGTGGCCAGAGCTGAAGTTGACATAGAAAATTCAGATTGTGAAAGTGGCAGTGAAGGTTCAGATCATGGCAATAATGTTCTTGTGGTGAAGCCAAAGGAGACAACAGGATCTAGTAGCTCTAGATCTGTAGCAGGTGGTCATACTATTGACAAGTACTACAAGCCTCCTTCTATAGAAGAATCTGCCAGTATGACACAAAGAGTAATTAAGCTAAGCAATAAGGTTCAAACAACATTGACAACTCAGAAAAGAGAAGAGAGGAGGAATAGAACTTGTGAGTACATATGTCAGTGGTTCTATGAAGCTAGTATTCCACACAACACAGTAACCCTTCCTAGCTTTGCTCATATGTTAGAGGCCATTGGACAATTTGGTAGAAGTCTGAAAGGGCCTAGTCCCTATGAGATGAGTGGATCGTTCTTACAGAAAAGGAAGGAAAAGGTGATGGATGGATTCAAGGAGCACAAGGAATCATGGGAGCTCACAGGTTGTTCTATCATGACAGATGCATGGACAGATAGGAAGGGTAGGGGAGTGATGAATTTAGTTGTGCATAGTGCTCATGGGGTACTCTTCTTAGATTCAGTGGAATGCTCAGGTGACAGGAAAGATGGCAAATATATCTTTGAACTTGTGGACAGGTACATAGAAGAGATAGGGGAACAACATGTTGTCCAAGTGGTGACTGATAATGCTAGCGTCAACACAACTGCAGCAAGTCTATTGACAGCAAAAAGACCATCAATATTTTGGAATGGATGTGCTGCTCATTGCTTGGATCTCATGCTCGAGGATATTGGGAAGCTTGGACCAGTTGAGGAAACCATTGCTAATGCAAGACAAGTGACTGTTTTCTTGTATGCTCATACTAGGGTGTTGGATTTGATGAGAAAGTTTCTTAACAGAGACTTGGTTCGCTCTGGGGTTACACGATTTGCCACAGCTTATTTGAATCTAAAAAGCTTGTTAGACAACAAAAAAGAGTTAGTAAGACTATTTAAATCAAATGAGATGGAGCAATTGGGTTACTTGAAGCAGGCCAAGGGGAAGAAAGCCAGCAAAGTGATCATATCTGAAACCTTTTGGAAAAATGTTGACATTGCAGTTAATTACTTTGAGCCATTGGCTAACGTGTTGAGAAGAATGGACAGCGATGTACCATCAATGGGATTCTTCCATGGTTTAATGCTTGAGGCGAAGAAAGAAATTTCTCAGAGATTCGATAATGATAAGAGCCGCTTCATAGAAGTTTGGGATATCATTGATAAAAGATGGGACAACAAGCTCAAGACTCTACTACACCTGGCTGGGTACTATTTGAACCCCTACTACTACTACCCAAATAAGCAAGAGATCGAGAGTGATGGATCATTTAGAGCAGGTGTGATTTCCTGTATTGACAAGTTGGTTGATGATGAAGATATCCAAGACAAAATAATTGAAGAACTCAACTTGTATCAAGATCAGCATGGGAGTTTTGGACACGAAATTGCCGTAAGGCAGCGAAAGAACAAAAATTTCAATCCAGGTTCAGATCTCAACATGTGAACTTAATTTTATTGCTGAATATCATTTTTGTTGTAATTTGTGTAATGTTTATGCAGCAAAATGGTGGCTGAACCATGGAACAAGCACACCAAATCTTAGGAAGTTGGCTGCAAGAATTTTGAGTTTGACCTGCAGCTCCTTAGCTTGTGAGAGGAACTGGTCAGTTTTTGAACAGGTAAAAAGAAATTTGTGACCTGTAGCTTTATGTGCATGCTGTCTATTTTGAATTATAATGCTTATTTATGGAATTTAGATCTGACCTGCAGCTTTGTGTTCACTACTTGGCTTATAGGTTGATACAAAGAAGCGCAACAGGCTACTTCATGAAAGGATGCGAGATCTGGTGTTTGTTAAATTTAACTCCAAGTTAAGAAATAAGAGAGAGAACAAGGGTAGAGATCCTATAGAGAAGGAAGTGGATGATGTTGTGGCAGATGGTGACAATGAATTCATTACTGGTGTTGTGCCTTCATCAAGTGAAATGGATCAACAATGTGCAAAAGAGTCACAGCAGCACACAACACCACAAGCACCAGCACCAGCTAAAAAGAAAAGGCCTGTGCACGCTAAGAAGAGGAAAGTCAGAAGCCTATAGTCTTTGATGCGCAATGCCCCAGTGCATCCTGAAGCTCCATCATCCGACTCAGAAGATTGTGATGATGGTATTCCAATGCAGACTTCTGATTCTGATAAGTCACCCTCTCCCTCTCCCTATGTCTCTGAGACCGATGATTGATGACTAGAAGAAATGAAGATTGCAATATTGCCTCATATTAGTAATTTAGTATCCACTATCTAGAATTCTTGATGACCTTTGTGTTGTACTGTTGTCTTTATTCCAGAATGCTGTACTTTTGTGAAACTGATGTTTCAGTATTCTGTTAACCACTTAGCCTGTGATGTAATGTACTCCTATGAACCTGTAATGTACTCATTTGAACTGGTTATGTATCAATTGGTAATGGTTATGAAGTTATGCC
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| CDS seq | ATGGCACAACAATCCGGTAATCCGTCCAGTGCTGCCTCTGTCTCAGTAGAAGCTGGACCAAAACAAGCTGGTATCAACTCAGATGATCCTGCATGGGCTCATTGTTTTTGCCCAGACATAACCAAGAAACATCACCTACGGTGCAAGTATTGTGACAAGGTCTGCACTGCTGGAATTACAAGAATTAAGTACCATCTTGCTGGAATTAAAGGTTTCAATACTACTAAGTGTCAGAAAGTTCCAAGTCCAGTGCAGCAAGAGATGTTTGATTTGCTTACCAAGAAGACTAGTGAAAAGGAACAGAAAAACAAAGAAAAGGAAGTGGCCAGAGCTGAAGTTGACATAGAAAATTCAGATTGTGAAAGTGGCAGTGAAGGTTCAGATCATGGCAATAATGTTCTTGTGGTGAAGCCAAAGGAGACAACAGGATCTAGTAGCTCTAGATCTGTAGCAGGTGGTCATACTATTGACAAGTACTACAAGCCTCCTTCTATAGAAGAATCTGCCAGTATGACACAAAGAGTAATTAAGCTAAGCAATAAGGTTCAAACAACATTGACAACTCAGAAAAGAGAAGAGAGGAGGAATAGAACTTGTGAGTACATATGTCAGTGGTTCTATGAAGCTAGTATTCCACACAACACAGTAACCCTTCCTAGCTTTGCTCATATGTTAGAGGCCATTGGACAATTTGGTAGAAGTCTGAAAGGGCCTAGTCCCTATGAGATGAGTGGATCGTTCTTACAGAAAAGGAAGGAAAAGGTGATGGATGGATTCAAGGAGCACAAGGAATCATGGGAGCTCACAGGTTGTTCTATCATGACAGATGCATGGACAGATAGGAAGGGTAGGGGAGTGATGAATTTAGTTGTGCATAGTGCTCATGGGGTACTCTTCTTAGATTCAGTGGAATGCTCAGGTGACAGGAAAGATGGCAAATATATCTTTGAACTTGTGGACAGGTACATAGAAGAGATAGGGGAACAACATGTTGTCCAAGTGGTGACTGATAATGCTAGCGTCAACACAACTGCAGCAAGTCTATTGACAGCAAAAAGACCATCAATATTTTGGAATGGATGTGCTGCTCATTGCTTGGATCTCATGCTCGAGGATATTGGGAAGCTTGGACCAGTTGAGGAAACCATTGCTAATGCAAGACAAGTGACTGTTTTCTTGTATGCTCATACTAGGGTGTTGGATTTGATGAGAAAGTTTCTTAACAGAGACTTGGTTCGCTCTGGGGTTACACGATTTGCCACAGCTTATTTGAATCTAAAAAGCTTGTTAGACAACAAAAAAGAGTTAGTAAGACTATTTAAATCAAATGAGATGGAGCAATTGGGTTACTTGAAGCAGGCCAAGGGGAAGAAAGCCAGCAAAGTGATCATATCTGAAACCTTTTGGAAAAATGTTGACATTGCAGTTAATTACTTTGAGCCATTGGCTAACGTGTTGAGAAGAATGGACAGCGATGTACCATCAATGGGATTCTTCCATGGTTTAATGCTTGAGGCGAAGAAAGAAATTTCTCAGAGATTCGATAATGATAAGAGCCGCTTCATAGAAGTTTGGGATATCATTGATAAAAGATGGGACAACAAGCTCAAGACTCTACTACACCTGGCTGGGTACTATTTGAACCCCTACTACTACTACCCAAATAAGCAAGAGATCGAGAGTGATGGATCATTTAGAGCAGGTGTGATTTCCTGTATTGACAAGTTGGTTGATGATGAAGATATCCAAGACAAAATAATTGAAGAACTCAACTTGTATCAAGATCAGCATGGGAGTTTTGGACACGAAATTGCCGTAAGGCAGCGAAAGAACAAAAATTTCAATCCAGGTTCAGATCTCAACATGTGA
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| Protein seq | MAQQSGNPSSAASVSVEAGPKQAGINSDDPAWAHCFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGIKGFNTTKCQKVPSPVQQEMFDLLTKKTSEKEQKNKEKEVARAEVDIENSDCESGSEGSDHGNNVLVVKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTTLTTQKREERRNRTCEYICQWFYEASIPHNTVTLPSFAHMLEAIGQFGRSLKGPSPYEMSGSFLQKRKEKVMDGFKEHKESWELTGCSIMTDAWTDRKGRGVMNLVVHSAHGVLFLDSVECSGDRKDGKYIFELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSIFWNGCAAHCLDLMLEDIGKLGPVEETIANARQVTVFLYAHTRVLDLMRKFLNRDLVRSGVTRFATAYLNLKSLLDNKKELVRLFKSNEMEQLGYLKQAKGKKASKVIISETFWKNVDIAVNYFEPLANVLRRMDSDVPSMGFFHGLMLEAKKEISQRFDNDKSRFIEVWDIIDKRWDNKLKTLLHLAGYYLNPYYYYPNKQEIESDGSFRAGVISCIDKLVDDEDIQDKIIEELNLYQDQHGSFGHEIAVRQRKNKNFNPGSDLNM |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0379800 | OsNip_01t0379800-00 | Chr01 | 15798713 | 15802130 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCACAACAATCCGGTAATCCGTCCAGTGCTGCCTCTGTCTCAGTAGAAGCTGGACCAAAACAAGCTGGTATCAACTCAGATGATCCTGCATGGGCTCATTGTTTTTGCCCAGACATAACCAAGAAACATCACCTACGGTGCAAGTATTGTGACAAGGTCTGCACTGCTGGAATTACAAGAATTAAGTACCATCTTGCTGGAATTAAAGGTTTCAATACTACTAAGTGTCAGAAAGTTCCAAGTCCAGTGCAGCAAGAGATGTTTGATTTGCTTACCAAGAAGACTAGTGAAAAGGAACAGAAAAACAAAGAAAAGGAAGTGGCCAGAGCTGAAGTTGACATAGAAAATTCAGATTGTGAAAGTGGCAGTGAAGGTTCAGATCATGGCAATAATGTTCTTGTGGTGAAGCCAAAGGAGACAACAGGATCTAGTAGCTCTAGATCTGTAGCAGGTGGTCATACTATTGACAAGTACTACAAGCCTCCTTCTATAGAAGAATCTGCCAGTATGACACAAAGAGTAATTAAGCTAAGCAATAAGGTTCAAACAACATTGACAACTCAGAAAAGAGAAGAGAGGAGGAATAGAACTTGTGAGTACATATGTCAGTGGTTCTATGAAGCTAGTATTCCACACAACACAGTAACCCTTCCTAGCTTTGCTCATATGTTAGAGGCCATTGGACAATTTGGTAGAAGTCTGAAAGGGCCTAGTCCCTATGAGATGAGTGGATCGTTCTTACAGAAAAGGAAGGAAAAGGTGATGGATGGATTCAAGGAGCACAAGGAATCATGGGAGCTCACAGGTTGTTCTATCATGACAGATGCATGGACAGATAGGAAGGGTAGGGGAGTGATGAATTTAGTTGTGCATAGTGCTCATGGGGTACTCTTCTTAGATTCAGTGGAATGCTCAGGTGACAGGAAAGATGGCAAATATATCTTTGAACTTGTGGACAGGTACATAGAAGAGATAGGGGAACAACATGTTGTCCAAGTGGTGACTGATAATGCTAGCGTCAACACAACTGCAGCAAGTCTATTGACAGCAAAAAGACCATCAATATTTTGGAATGGATGTGCTGCTCATTGCTTGGATCTCATGCTCGAGGATATTGGGAAGCTTGGACCAGTTGAGGAAACCATTGCTAATGCAAGACAAGTGACTGTTTTCTTGTATGCTCATACTAGGGTGTTGGATTTGATGAGAAAGTTTCTTAACAGAGACTTGGTTCGCTCTGGGGTTACACGATTTGCCACAGCTTATTTGAATCTAAAAAGCTTGTTAGACAACAAAAAAGAGTTAGTAAGACTATTTAAATCAAATGAGATGGAGCAATTGGGTTACTTGAAGCAGGCCAAGGGGAAGAAAGCCAGCAAAGTGATCATATCTGAAACCTTTTGGAAAAATGTTGACATTGCAGTTAATTACTTTGAGCCATTGGCTAACGTGTTGAGAAGAATGGACAGCGATGTACCATCAATGGGATTCTTCCATGGTTTAATGCTTGAGGCGAAGAAAGAAATTTCTCAGAGATTCGATAATGATAAGAGCCGCTTCATAGAAGTTTGGGATATCATTGATAAAAGATGGGACAACAAGCTCAAGACTCTACTACACCTGGCTGGGTACTATTTGAACCCCTACTACTACTACCCAAATAAGCAAGAGATCGAGAGTGATGGATCATTTAGAGCAGGTGTGATTTCCTGTATTGACAAGTTGGTTGATGATGAAGATATCCAAGACAAAATAATTGAAGAACTCAACTTGTATCAAGATCAGCATGGGAGTTTTGGACACGAAATTGCCGTAAGGCAGCGAAAGAACAAAAATTTCAATCCAGGTTCAGATCTCAACATGTGA
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| Protein seq | MAQQSGNPSSAASVSVEAGPKQAGINSDDPAWAHCFCPDITKKHHLRCKYCDKVCTAGITRIKYHLAGIKGFNTTKCQKVPSPVQQEMFDLLTKKTSEKEQKNKEKEVARAEVDIENSDCESGSEGSDHGNNVLVVKPKETTGSSSSRSVAGGHTIDKYYKPPSIEESASMTQRVIKLSNKVQTTLTTQKREERRNRTCEYICQWFYEASIPHNTVTLPSFAHMLEAIGQFGRSLKGPSPYEMSGSFLQKRKEKVMDGFKEHKESWELTGCSIMTDAWTDRKGRGVMNLVVHSAHGVLFLDSVECSGDRKDGKYIFELVDRYIEEIGEQHVVQVVTDNASVNTTAASLLTAKRPSIFWNGCAAHCLDLMLEDIGKLGPVEETIANARQVTVFLYAHTRVLDLMRKFLNRDLVRSGVTRFATAYLNLKSLLDNKKELVRLFKSNEMEQLGYLKQAKGKKASKVIISETFWKNVDIAVNYFEPLANVLRRMDSDVPSMGFFHGLMLEAKKEISQRFDNDKSRFIEVWDIIDKRWDNKLKTLLHLAGYYLNPYYYYPNKQEIESDGSFRAGVISCIDKLVDDEDIQDKIIEELNLYQDQHGSFGHEIAVRQRKNKNFNPGSDLNM
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0722550 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g28200 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0379800 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0008810 | SBH | 0.365567 | 4.071370 | 2.267147 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0008450 | SBH | 0.000000 | 2.041131 | 0.847060 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0008840 | SBH | 0.000000 | 3.245210 | 1.728544 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0008350 | SBH | 0.053151 | 0.077063 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0008440 | SBH | 2.056952 | 12.800114 | 7.382238 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_07G0089600 | RBH | 0 | 0.016867 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0008410 | SBH | 0.136315 | 0.418625 | 0.476629 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_07G0091500 | SBH | 0.0166185 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0008440 | SBH | 0.000000 | 4.358608 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0008420 | SBH | 0.000000 | 3.099773 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0008460 | SBH | 0.343791 | 0.400703 | 0.301897 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0008330 | SBH | 0.000000 | 2.915874 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G008450 | SBH | 0.318322 | 0.830001 | 0.529815 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0008320 | SBH | 0.478318 | 7.001756 | 2.133536 |
