Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0360100 | OGI:01044920 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:14608644-14613681 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAGTAAAACAATTGCCACCTTCCTCTCGATATAGCCCATGATCTCGTAGCAATCGTGTAGTAATATGTTTACTAATGTGTTCAATACACAGTATAAGAGTAAAAACTGATACTAAGAGTATTGTTAATCTGTACCACAAAATAGTCGTACGAATGAAAAAATTACAGGCTCAATCATACACAAGTGATAAAAATTACTCACAGGTGAATCAAACTAGAAAACAAAAAAGATGATTCAGCCAAAAATCCATTGTGAAACTAGGATCCTGGTGGCTTTGCTGGATCTTGCTATAACTGGCCGGTGTCTTGTGATAGGTAATGGAGAGGGCAACTGGGTGGCAAGTGGTAGTCCATGATGGAATCATGGAAGGGTGTAGCGGTGTGGTATAGAGATGGGCTCGACGTTGCACAGTAACAGCCCTCCATCATCTAGCAAGCACGAAAAAAATACAAAAACATTCTTGTTCATGTCATAGAGACGACGAGTAAAAGAAAAATAGCAAACAACCTCCATCCCCAGCGGACTCCACCCTATCCTCTGCAACTAATCACATGGAGCACGATGTGCAAATGTAGGACCTGTGCAGCCCATCAATTCAGATCAAGTTATATTGGAGATTACACGTTAATTTGATTTGCAAAAAAGAAATTGGGGCTTCATGCCTGAAGATAAAGGAGAGTATGCAGATGCAAATCAAAGTGTCATTTCCTTACTTTCTTGTTCTGCCAATGTCGCCGATGTGGAGCAGCTGCTGGTTGTTGATCCAGGCCCAGGTGAACACCTCCTTGCTGGTTAAGGTGATGCCCAACGTCCGGCAGCGAGGCCCGAAGCAGCGCCTTCACCTCAACTGCCATCGGCCATCACTCACTGGCCACCGCCATCAACCGCCCTGCCACGGTGTCGCCGTCCTCTTCCATGGTGTGTCACCTATATGTGGGCTGAGATGGTGGATCGATCCAGATCTGAAAAAAAGAGAAGAAAAATGAAGTGGGGACGAGAGTGGTTGGTTGGATACGGGAAAAATAGAATATATACCGGAATTAGGGAAGTTGTTTTTATCGAAGTAAATCATTTACTCCGATAATAGTGGGAGCAGGATGACGTGACGTGGGGTGGGATCGGAAGTAGAGAAGTTGTTTTTATTATCGAAGTAAATCGTTTACTCCGATAACGATAGGAGCAGAATGACTGGACTAATACATGTTCGGCGCTCGGAATACTAAGGAACACGCTGCGCTCCTAATAGTAGTACTATATTTTAATATTAAAATATAAAATATTTAATCTATTATATGAGAAACAATATAACGATGCTAGCCGCACAATATGTGCGGGCCGCCATACTATCTGATGTGCGGCTCACATGGACAGAAACAAGCAACTCAGCCTACATATAAAATGATCAAACCAAACACGAATAGCATGCTTGAGAGAAATAGAGCACAGCAAGGACAACAACCACTGCATCAGGAGAAGTCCATGAAGGAACAGAACCCACAGCTAAAAATATATGAGAATCTAACAAACTACAGAATTCCAAATTGATATTGCTTATTGACTGCTGCTACTTGGATTCCTTGCACACAGGATGATGCCCCTACTTTTTTTCTTCATTGTTTTTTTGGATACATACGAATAGTTTAGCATCAGTATAGGTGCCTTTTAAGGGGCAAAATCCATCAATAGCGTGGTAGTTTCTTCTGCAGAATATAGCACTTGTAACTGGCCTCTTTTCTCATGGCTAAATTTCTTTGTTCTCAGCATAGTGGTCCTCTCTATACTTTAAATGTATGGAGCTAGAAGCATAATGTAGTCTGATTTGTGTTGCTATGCGTGTTACTTTCACACAAGCACAATGAAAGAAATGGGCATTTGATAGTCTGGATCTACCCCCATTCGACCACGGAACTAACGTGCAGATATGTGCTAGTCAGCGAAACAGGCTGATTAAACAAGGTTTGCGCAATTTCACTTACCAATAGTTGGAAGAAGCAGCACCATACTTTAACTTGTTGCAAATATAGTACTGCAATTCGTGTAGTAACTCTTTACTTTAAGAGGAGAGTATTTTACGGTCTTCATGAGTACTGCAATGTTTAGAGTTAATTTATGATCTTTTTTTTATATCTCAACACAGATAAGATATTGAGTAGTATCAAAATTAGCAATAAAATACAGTACCTCTTAGGCTGTGTTATTTCCTCATGGTTGGGAACACTACCCTCCAGCACGGAAAACGGAGCAGACCATTAACGCGTGCCTAATTAAGTATTACCTTTTTTTAAAAAAAATAGATCACTATGATTTTTTTAAACAACTTTCATATAGATATTTTTTTTAAAAAAAATACACCGTTTAGTAGTTAATGGTTGAAAACCCCGAGTAACGAACAAAGTCTAAAGTACCGAGATCAAACTTGTCCCAAACTAAATTCTGCCCAGCTAAATGGTCCATCTGATATATATTGCCCGATCCGAATCAAATTTTACTTCCTCCCAACAAATAGATAAAGAACACTGTGCATAGGGACAAGTACTTTTGTTTGAGATAGAGAGAGAGAGAGAGGAAAAGTAAACTGACCTTGTTCAGGCTTAGCTCTGACGAATTGGAAGCTAGTAGGTGCAGATGCATTACACTGAATCCTATCCGGGTTTGCAGCTGGTGCAGGCAGTCAGGCTAGAAACGTGTGGGCATTCCGTCGAGCATGTTGTGGTCATGCCTGGACGGCGTCGCCGACCCGCATCCCAGTTTGCCGGCGTTCTCCACTACACAGGGACCACACATGAGTTCTCCTCAGTCGCTAGTGCCCCCTATCAATTAGCTCTAGATGCAACCAGACGGTGGGAATTCTGGGTCATTGGGGGGTACTTACCTGGGGTTTTGCAGTTAGGTGCATTGCATCCTTGGTTGCTGGTGATGGCAGCTCCGAAGACTGATGGAATTGGGGTTTTTGCAGTTGGATGCGTCGTCGGTGGCTCTGAACTCTCAGGACCGAAGAAATTTGGGCGTGTGATATCGCTAGCTAGGTTTTCAGGTGGCTCATGCCTTGGTCGATTCTTTGACAGCTTCGTCTGGTCTTTTTTTTTTTTGGCTGCCTCCGGGAGGATATTTGCTTGGTTTGAAACGTGATTTATCAGCTCTAGTGATAGGTAAGTATATATTGTATTCGAGGAAAGAAGTGGTAACATGTTGGACCTGTATTAATTATGCTGTATTTCTACTTGCTGAAATCTCAATTTCAATATTTGGACCCTGTATTATGTCAGCTAGCTAGTCCAATTAAACAGATGAATTACTAGCATATATCACAATTCAGAATCCGTGTTGATTAGTTTTTCCTAAAAACCAATACTAAAAGCTTGTTATAAGATACTCCAAAGTCCCATTTGGATATACAGCAGCTACAATCATAGAGATGTGCTCACACGGACGTGCGAAGTATGCGTAATTGGTGAGAATATATACCGCTGCACTGTCGTGGGAATGTGTGAGTGGGTTGGCTGTGTGCACTGTCATGGTGCAGAGCCCGAAAGTGCCTTCGGAATAATTTTTGACTGAGTAACAATAAAATTTTCATTATGTAAAAATATATACTGCTGCTGCTAAGTCTGCAACAATATGGTGAAAAAAGAAGATAATTTCACCGAGATGAGGTTTCCAAGTTGCTTTAGCCATAGACTTGACCATACAAAATGCTCCATCTTAGAACCTAGAAGATGCATTGCCCATGTATTCAAATCCCAAGTCAACAATGGGTGAGCTCTGCTAGGGAGCTATCCTGCAAGGCAGAGAGAAATCAAACAAGCAGAACTAAACTGAATCCAGTAGCATATGGAAATGTATAATATAGGTCATGTTGAGTAGTAATAATTAATCTTGCAAACCTTAATAGAAAAAGCTTCTTCATGGCCTCATCAATAGTGTTGGATCACAAATCTCTGTTCCGACGAATGACATATTTCCAAGATTTTGGTTCCAGCAATTTAGCACCTAAAATATAGCAAATGTCATTATTATTTGTTTATTTAAACTCCGCAAAATTATTAATTCTGGAAATGATCAAATTTGGGATATAAGCATGTGCATGAGTAAACTCTCGAAAATGATCAAGTTTATTTATCTACAGACTCAGGCTACCTACCTTTATAACACAGGAAATTTTTTAGAAATTTGAGAATCATGACAAGTAACATATGCTTCGACACTTATTAGCCAGATCAAACGCATATAATGTTTTTATTCTTTTAGGCAAATGTAATATTTGTATTAAACAAAAACAACTCAAATGTTTGATACTGTCATATCATCCTATTCACTTTCAAACACTACAGAGAAAAATTAATCCACAGAAAGTGCGAGAAGGAAGAAAGCTTAACACACAACCAAATTAAACGTTTGCTTTGTGCAACCGTTGTAAGCTAAAATCTGAATATATGATATTCGAAATCAATGTACCAGCTCCTGGTAAGACGAGTGATTACCATAGCCCATACTTCCTATAATAATGTGATACCAGGTACGAATGCAGTGTACCAGATTTGCTGTCGTGGCGAGACTAAAGCTGGGCATTATAGCAGGAAACAAGAAGCTGAATTTCATGATGTGCCAAGTGCAAACCCCTTGGTAGCCATGCACTCGGATTTGCTGTTGCAGCAGTTTGTTCAATTCATGCTTAAAAATTTTATGCCATATATTACTATATGCTACTCTCTTTTTTTTCGAGGATATGCATGCATAAACTAACACATGCAGGGAAAATATTTCATCTTTAAGAAGTACTCCGATTTGTAATTTCCTGTCTGGGCACTGGTACACAAGGGACAGCTTGCAAATAAAAGGGAAAAACCAGGAAGTACCTTCCCGTGGATCGCTGGAGCGCATATGTGACAAGAGTTTCTCCTCAACGCTATCAAGACGTTGCTTGAGGCATCCAGGAAGTGACTTCATAGCTGGGCAGTACTTGATTTCAAGACTCTCCAAGGAGGAGTAAGCTCTAGGACCATCCGGCAAGGATGTTAGGCTTTTGCATCTTTCAATC
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| CDS seq | ATTGAAAGATGCAAAAGCCTAACATCCTTGCCGGATGGTCCTAGAGCTTACTCCTCCTTGGAGAGTCTTGAAATCAAGTACTGCCCAGCTATGAAGTCACTTCCTGGATGCCTCAAGCAACGTCTTGATAGCGTTGAGGAGAAACTCTTGTCACATATGCGCTCCAGCGATCCACGGGAAGGTGCTAAATTGCTGGAACCAAAATCTTGGAAATATGTCATTCGTCGGAACAGAGATTTGTGA |
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| Protein seq | IERCKSLTSLPDGPRAYSSLESLEIKYCPAMKSLPGCLKQRLDSVEEKLLSHMRSSDPREGAKLLEPKSWKYVIRRNRDL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0360100 | OsNip_01t0360100-01 | Chr01 | 14608644 | 14613681 | - | RAP2018-11-26 | ||
| CDS seq | ATTGAAAGATGCAAAAGCCTAACATCCTTGCCGGATGGTCCTAGAGCTTACTCCTCCTTGGAGAGTCTTGAAATCAAGTACTGCCCAGCTATGAAGTCACTTCCTGGATGCCTCAAGCAACGTCTTGATAGCGTTGAGGAGAAACTCTTGTCACATATGCGCTCCAGCGATCCACGGGAAGGTGCTAAATTGCTGGAACCAAAATCTTGGAAATATGTCATTCGTCGGAACAGAGATTTGTGA
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| Protein seq | IERCKSLTSLPDGPRAYSSLESLEIKYCPAMKSLPGCLKQRLDSVEEKLLSHMRSSDPREGAKLLEPKSWKYVIRRNRDL |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.105371 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0359800 | RBH | 0.557073 | 0.127094 | 0.405708 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g25760 | SBH | 0.360112 | 0.082166 | 0.100386 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0360100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016750 | SBH | 2.686067 | 8.307322 | 7.161385 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0016430 | SBH | 0.186836 | 2.266571 | 1.176480 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016640 | SBH | 3.956863 | 7.882003 | 12.720966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0016130 | SBH | 0.234253 | 0.193804 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0016170 | SBH | 7.443349 | 5.452519 | 8.691284 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0246400 | SBH | 0.4108275 | 2.5582355 | 0.3660785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0016270 | RBH | 0.030398 | 0.041041 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0242100 | RBH | 0.4661965 | 1.248354 | 1.464382 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0016170 | RBH | 0.0 | 0.024738 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0016110 | SBH | 0.775541 | 3.832317 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0016330 | SBH | 5.647802 | 17.338108 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0016170 | SBH | 0.820173 | 0.367919 | 0.316204 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0016020 | RBH | 0.081282 | 1.027824 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G016440 | RBH | 0.176074 | 4.534771 | 1.002945 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0016220 | RBH | 0.449406 | 2.259116 | 0.260833 |
