Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0347300 | OGI:01041420 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:13815140-13817056 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ATATGATAGCTGATAGCTATCCCTGAAGTCCTAAGTATCTGCGAGAACCCTGGAATATTTGCAACCATTCTGTATGCGGTTGCTCTGAAGCCGTTTTCTGCCAACGACAGAGAAAGCAGAGTAATTCCTCTACTGTTTGCCTTTTTCTTTTTGTTGTGGTTTGTTTTTGTGCATCACATGTTATTCTAGCTCATATATGTTGTTTTAGTTTTCAGGTCCTACTTCCGGAACGTATCTAAGGACTGCATTTGTTCTGTTCCACTTAAAATGGTGAGCTGCTAGCAACAAATTAATACCATTTCCAATTTTCAGTTTGTTTTAAAATTGATTGTTTCAAAATTGAATGTTTTGGATGATCTAGTTAACCCATGCAATTGGCTTCGCTAGCAGTTCTCTTTCAAGTGCAAAGCCGCTAAGCAAATCTCCGATGTCTCTTTATTATGTTTCCAAGCCAGGAAATCATTTGAAAGAGATCTCCGCAACAACGTCACACTTTTTTATATATATTTTTCGGTCTAACCCACCTGCTTATTTATCATAATATTTTTTTTAGAAAATGGATTTAATGAAAATGTAAAGTGATGTAATGCAAAGTGATTTAATGAAAATCCATTTTCTAAAAAAAAAGGATATACACCGCCAATTTACCTTACATCACTTCACATTTCTTTTGAACGCACGTCACTGTACACTTGATCTGTGCCTTCTCGAAGTTAGTACAACGATTTGATTTTAGTTACATACATAATCCTCACTCCTCAGTCATTATTATCCTCTAAATGTCTTAGGACTGCAAGGACTCTCTGAAGAATCGCATCCGGATATTCACTGAAGCAGTAGTGGTCATGGTATGCCCAGTCCTTCTCTCGTTCGCGCTAAAGAAGGTGGACCTGACGGCCAATCGAAGCAAACAAATCGTGGACAGCATTTCCCCGATTGGAGCGTTAACTCTGGAAGCTGGCATACTCCCTTTCCTCGGCCTCTGCCTCTCCACGGTGCTCGGAGAGAGGCTCGCGTGGCTCGTATTGGCCTCGAAGCTGCTCATCCACCTATGTGTCATTCTCCTCATGGCTCTAGCCTTTGTGATTCTGCTGCTCATCAGCAAGAGTAACATTGTCTGCCTAAGCATCTGGATCCCCTTCGTCCCCTTCATCCTATGGCTAGGCTACAACTCCGTGAAGGATGAGGAGCATGAGAACGCCGACGACGCCACGAAATCAGCCCACCACGGGAAGCTGGAAATCTCGGTTGATTTCTCTGCTAGTATCACCTCCCTTCTGTTCCTGGGATTAAAAGGTCTTGCGTTGGAGGGACAGGCCAGCGCCATCAAGGGGCTGGATGCTCACCTTTCCGACTCCCTCATCGTCAGTTTCGTGACCTGCGTCCTGGGTGTAGTCTTCATGCTTGTTGGAACGGCTCCACCGGTGTACGGCATGGGCCGCTTGGTGGATTCCTTGAGGATCTTGGATACCTCTCTGGCAATAGCGTTCGGGGTGATCGTCGTGCTAATCACAATTGCACCTCTGAAGGAGGCGGCGTGGTTAGTATCCATCCCGTGGATCCTTTCCTTTTTCGTGTGGTTGTTCATCCGTTTGTTCGACCACGACGAGGGAGAGGACAGGGATGTGAAGCCGGTGTCTCTAGAGCTGACCAAGGCCGCGTTCACAGGGTTCTTGGCCGTCTCCATACCGAGCTTCAGCAATAGCTCCACCAGCGGCGGCTACACCCACGCTTTCATAGTGCTTACTGGGTCAGCTGTCCTCGCTGGCCTCGCGTGGAGGCTGATCACGCACGTGAAGAAGCCGTCGCGAGCCATGGTCTGGGCTGAAAATGTAGCTTCTTCGTGTGCGCACATCTGTGTTGCGGCGGCTGTTGTTCCATTTGCAAGCATATCCATGACGGTGCTCAGGTCTCTCG
More
|
||||||||||
| CDS seq | AGTCCTAAGTATCTGCGAGAACCCTGGAATATTTGCAACCATTCTGTATGCGGTTGCTCTGAAGCCGTTTTCTGCCAACGACAGAGAAAGCAGATTTTCAGGTCCTACTTCCGGAACGTATCTAAGGACTGCATTTGTTCTGTTCCACTTAAAATGGACTGCAAGGACTCTCTGAAGAATCGCATCCGGATATTCACTGAAGCAGTAGTGGTCATGGTATGCCCAGTCCTTCTCTCGTTCGCGCTAAAGAAGGTGGACCTGACGGCCAATCGAAGCAAACAAATCGTGGACAGCATTTCCCCGATTGGAGCGTTAACTCTGGAAGCTGGCATACTCCCTTTCCTCGGCCTCTGCCTCTCCACGGTGCTCGGAGAGAGGCTCGCGTGGCTCGTATTGGCCTCGAAGCTGCTCATCCACCTATGTGTCATTCTCCTCATGGCTCTAGCCTTTGTGATTCTGCTGCTCATCAGCAAGAGTAACATTGTCTGCCTAAGCATCTGGATCCCCTTCGTCCCCTTCATCCTATGGCTAGGCTACAACTCCGTGAAGGATGAGGAGCATGAGAACGCCGACGACGCCACGAAATCAGCCCACCACGGGAAGCTGGAAATCTCGGTTGATTTCTCTGCTAGTATCACCTCCCTTCTGTTCCTGGGATTAAAAGGTCTTGCGTTGGAGGGACAGGCCAGCGCCATCAAGGGGCTGGATGCTCACCTTTCCGACTCCCTCATCGTCAGTTTCGTGACCTGCGTCCTGGGTGTAGTCTTCATGCTTGTTGGAACGGCTCCACCGGTGTACGGCATGGGCCGCTTGGTGGATTCCTTGAGGATCTTGGATACCTCTCTGGCAATAGCGTTCGGGGTGATCGTCGTGCTAATCACAATTGCACCTCTGAAGGAGGCGGCGTGGTTAGTATCCATCCCGTGGATCCTTTCCTTTTTCGTGTGGTTGTTCATCCGTTTGTTCGACCACGACGAGGGAGAGGACAGGGATGTGAAGCCGGTGTCTCTAGAGCTGACCAAGGCCGCGTTCACAGGGTTCTTGGCCGTCTCCATACCGAGCTTCAGCAATAGCTCCACCAGCGGCGGCTACACCCACGCTTTCATAGTGCTTACTGGGTCAGCTGTCCTCGCTGGCCTCGCGTGGAGGCTGATCACGCACGTGAAGAAGCCGTCGCGAGCCATGGTCTGGGCTGAAAATGTAGCTTCTTCGTGTGCGCACATCTGTGTTGCGGCGGCTGTTGTTCCATTTGCAAGCATATCCATGACGGTGCTCAGGTCTCTCG
More
|
||||||||||
| Protein seq | SPKYLREPWNICNHSVCGCSEAVFCQRQRKQIFRSYFRNVSKDCICSVPLKMDCKDSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTANRSKQIVDSISPIGALTLEAGILPFLGLCLSTVLGERLAWLVLASKLLIHLCVILLMALAFVILLLISKSNIVCLSIWIPFVPFILWLGYNSVKDEEHENADDATKSAHHGKLEISVDFSASITSLLFLGLKGLALEGQASAIKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAPPVYGMGRLVDSLRILDTSLAIAFGVIVVLITIAPLKEAAWLVSIPWILSFFVWLFIRLFDHDEGEDRDVKPVSLELTKAAFTGFLAVSIPSFSNSSTSGGYTHAFIVLTGSAVLAGLAWRLITHVKKPSRAMVWAENVASSCAHICVAAAVVPFASISMTVLRSL |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0347300 | OsNip_01t0347300-01 | Chr01 | 13815140 | 13817056 | + | RAP2018-11-26 | ||
| CDS seq | AGTCCTAAGTATCTGCGAGAACCCTGGAATATTTGCAACCATTCTGTATGCGGTTGCTCTGAAGCCGTTTTCTGCCAACGACAGAGAAAGCAGATTTTCAGGTCCTACTTCCGGAACGTATCTAAGGACTGCATTTGTTCTGTTCCACTTAAAATGGACTGCAAGGACTCTCTGAAGAATCGCATCCGGATATTCACTGAAGCAGTAGTGGTCATGGTATGCCCAGTCCTTCTCTCGTTCGCGCTAAAGAAGGTGGACCTGACGGCCAATCGAAGCAAACAAATCGTGGACAGCATTTCCCCGATTGGAGCGTTAACTCTGGAAGCTGGCATACTCCCTTTCCTCGGCCTCTGCCTCTCCACGGTGCTCGGAGAGAGGCTCGCGTGGCTCGTATTGGCCTCGAAGCTGCTCATCCACCTATGTGTCATTCTCCTCATGGCTCTAGCCTTTGTGATTCTGCTGCTCATCAGCAAGAGTAACATTGTCTGCCTAAGCATCTGGATCCCCTTCGTCCCCTTCATCCTATGGCTAGGCTACAACTCCGTGAAGGATGAGGAGCATGAGAACGCCGACGACGCCACGAAATCAGCCCACCACGGGAAGCTGGAAATCTCGGTTGATTTCTCTGCTAGTATCACCTCCCTTCTGTTCCTGGGATTAAAAGGTCTTGCGTTGGAGGGACAGGCCAGCGCCATCAAGGGGCTGGATGCTCACCTTTCCGACTCCCTCATCGTCAGTTTCGTGACCTGCGTCCTGGGTGTAGTCTTCATGCTTGTTGGAACGGCTCCACCGGTGTACGGCATGGGCCGCTTGGTGGATTCCTTGAGGATCTTGGATACCTCTCTGGCAATAGCGTTCGGGGTGATCGTCGTGCTAATCACAATTGCACCTCTGAAGGAGGCGGCGTGGTTAGTATCCATCCCGTGGATCCTTTCCTTTTTCGTGTGGTTGTTCATCCGTTTGTTCGACCACGACGAGGGAGAGGACAGGGATGTGAAGCCGGTGTCTCTAGAGCTGACCAAGGCCGCGTTCACAGGGTTCTTGGCCGTCTCCATACCGAGCTTCAGCAATAGCTCCACCAGCGGCGGCTACACCCACGCTTTCATAGTGCTTACTGGGTCAGCTGTCCTCGCTGGCCTCGCGTGGAGGCTGATCACGCACGTGAAGAAGCCGTCGCGAGCCATGGTCTGGGCTGAAAATGTAGCTTCTTCGTGTGCGCACATCTGTGTTGCGGCGGCTGTTGTTCCATTTGCAAGCATATCCATGACGGTGCTCAGGTCTCTCG
More
|
|||||||
| Protein seq | SPKYLREPWNICNHSVCGCSEAVFCQRQRKQIFRSYFRNVSKDCICSVPLKMDCKDSLKNRIRIFTEAVVVMVCPVLLSFALKKVDLTANRSKQIVDSISPIGALTLEAGILPFLGLCLSTVLGERLAWLVLASKLLIHLCVILLMALAFVILLLISKSNIVCLSIWIPFVPFILWLGYNSVKDEEHENADDATKSAHHGKLEISVDFSASITSLLFLGLKGLALEGQASAIKGLDAHLSDSLIVSFVTCVLGVVFMLVGTAPPVYGMGRLVDSLRILDTSLAIAFGVIVVLITIAPLKEAAWLVSIPWILSFFVWLFIRLFDHDEGEDRDVKPVSLELTKAAFTGFLAVSIPSFSNSSTSGGYTHAFIVLTGSAVLAGLAWRLITHVKKPSRAMVWAENVASSCAHICVAAAVVPFASISMTVLRSL
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0346250 | RBH | 0.166765 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24500 | RBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0347300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0016150 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0015770 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0016010 | RBH | 0.0 | 1.661296 | 0.740050 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0015470 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0015470 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0232800 | RBH | 0.4092515 | 4.195851 | 0.407037 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015570 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0230100 | RBH | 0.0903725 | 8.821078 | 0.029314 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0015480 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0015460 | RBH | 0.0 | 2.957716 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0015670 | RBH | 0.0 | 7.790547 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0015540 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0015340 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015800 | RBH | 0.0 | 0.0 | 0.267001 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015570 | RBH | 0.0 | 0.0 | 0.0 |
