Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0342750 | OGI:01040430 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:13524554-13528480 | ||||||||
| Gene Symbol | PDR16, OsABCG32, OsPDR16, PDR10, OsABCG34, OsPDR10, OsPDR1 | ||||||||||
| DNA seq | ATATTTACTGAAGCTAAGTGGTATTGGATTGGGTTTGGTGCTTTGATTGGATATACACTCTTGTTCAACCTCCTTTACACTGTGGCACTTTCATTTTTGAAACGTAAGTGGATTGATGAGACTGTTTTTATATGGATATAATTCCAAGAATTTAGCAAAACAGCATTTTGTGGGTTAACAGTTGATGCTCACTGTGACTGCTTTGCTAACTTTTCGCAGCACTTGGTGACTCTTACCCATCAGTGCCTGAAGATGCACTGAAGGAAAAGCGTGCCAACCAAACTGGTGAAATTCTAGATAGCTGTGAGGAAAAGAAATCTAGAAAGAAGGAACAGTCCCAAAGTGTCAACCAAAAGCATTGGAATAACACTGCAGAATCTAGTCAGATCAGGCAGGGAATACTCCCCTTTGCACAACTGTCACTTAGTTTTAATGACATAAAATACTCAGTGGACATGCCTGAGGTAAAAATTTTCAGTGAACTATGCATTGCAACATTTTTACAGCTACATACTTGCATACCCAAGATGCCTTACCCAATAGTACTGTTCAACACTTACAGGCAATGACAGCACAAGGAGTAACAGAAGAGCGCTTGTTACTTTTAAAGGGTGTTAGTGGTTCGTTTAGGCCAGGAGTACTTACCGCACTGATGGGTGTGAGTGGTGCTGGAAAGACTACTCTGATGGATGTATTAGCAGGGAGGAAAACTGGAGGATACATAGAGGGAGACATCACCATCTCAGGCTATCCAAAGAAACAAGAGACCTTTGCGCGTATATCAGGATACTGTGAACAAAATGATATTCATTCTCCACATGTAACAGTTTATGAGTCACTCGTATTTTCTGCTTGGATGCGGCTTCCTTCAGAGGTTGATTCAGAAACAAGAAAGGTTAGCTGGGTTGTAGGTATTGATTAATTTAAATAGGCAAATGAGCAGGCTTTGAAATTCGTGGTTTTTGACTGATTTTTTTACTGAATTATGATAACAGATGTTCATAGAGGAGGTCATGGAGCTTGTAGAGCTCACATCACTGAGGGGTGCACTCGTTGGGCTTCCTGGAGTGAATGGCTTGTCAACTGAGCAACGGAAGAGGCTAACTGTTGCTGTGGAGCTTGTTGCTAACCCTTCGATCATTTTTATGGATGAGCCTACATCTGGTCTTGATGCTCGGGCCGCTGCAATTGTGATGAGGACCGTAAGGAAGACCGTTGACACTGGTAGGACTGTTGTTTGCACAATTCACCAGCCAAGTATTGACATATTTGAAGCATTTGATGAGGTGGACAATTCTTTATTGTCAATATGGATAAAGGTCCTTAGATTTATTAAGATAAGTTCACATATTGACAATGTTATCATTTATGTATGACTTACAGCTTTTCCTAATGAAAAGAGGAGGAGAAGAGATATATGTTGGTCCATTGGGCCAGAATTCCTCAAAACTGATTGAGTACTTTGAGGTAAGAAGATTAGTAAAATAAAGTATTATTCATTGCAGGTTGTAGAACTTAGTGCCAGCAAAACTATATAAAGGTGGATACTTTTTATTTGATCTGTTCAGGGAATTGAAGGCATTAGTAAGATAAAAGATGGCTACAATCCAGCAACATGGATGTTGGAAGTAACCTCTACTACACAAGAGGAGATGCTTGGGATTGATTTCAGTGAAATCTACAAACGATCAGAACTATATCAGTTTGTCTCCTTTCATGCTGTTTTAGTGAACTGTAGTATATAGTGCAACATGTAATTCCTGATTGGGTGACAACATAATAAATTTGCCCCTTTTCACAATTTCAGAAGGAACAAGGAACTTATACAAGACCTAAGCACACCTACTCCTGGTTCTACTGATCTCCATTTCCCTACACAGTACTCTAGGTCGTTCTTCACACAATGCATAGCTTGCTTGTGGAAGCACAAGTTATCATATTGGAGGAATCCATCCTACACAGCAGTGAGGTTACTCTTCACCATCATCATTGCACTACTGTTTGGAACAATGTTTTGGGACCTCGGAAGGAAAACGTACATCTTCTAAGTTTATTCTCCTATCTTTCTGATTGATAGAACCTACTTTGCATGTGATATATTATGATACCTTACTCATACCATGGCAGAAAAAAAGAACAGGATCTATTCAATGCTGTGGGATCAATGTATGCTGCAGTTCTTTACATTGGGATACAAAATTCTGGTTGTGTTCAACCTGTAGTGGTGGTGGAGAGAACAGTCTTTTACCGAGAAAGAGCTGCCGGCATGTATTCAGGTTTCCCGTATGCATTTGGACAGGTGATTTCTAATTGGAATAAATCTATTTTATTATCCCTCAACTCTTTATGGAGTCCAAATTTCACTTTGAACTATGAAATCATCCAAGTTGTATACCTGAACTTTCAAAATATGATATGTTGCCTAGACACGCTACCATAATACACCATTTCCCTAAAACATCGATATGGCAATACATCTTAGTATCTTATGAAAAACAACAATTAGAAATACAGCAATTAATCAAGAATGAAGGAAGAAAGCAACCAAAGGTTGACTCAAAGTTTCAAATCTTCTAGAGGATCTCATCATAGAGTTCCACAGGACAGACTAGAAGCATCGGAACATAAGTGCTCCGTAACAGCAATGTTGTTCCAACTTCCAATGGATGACCAACAAGACCACCAATTGCTTGGATGTCAGCAAATTGAAGAGAAACAAGAGGGAGATAGAACAGATTTTCCTGTATTATGTTCTTGCAGTAACAGTTAAGAATTACCTGACCTTGTAGATGGAATAAGGCTGAAACCACCATTGTATTAGATATTGGGTTATTCTTCTTTTTTTTTAGGGTGGATATTGGGTTATTCTGATTCAATTTTGAAGGTTAAGTGAAAGTTTATTTTTACTCCGTAGAGTAGAGGCATAAAATTGATTCTTTCCTTTATAATTCATCTTAGTAATGGATGAAGAAATACAATGCCTTTGAAATCAAACTGAAGCTTGTAGTTCAATGAAAAGAACTATTCACTACTGTTCATAAAACTTAAAAGTCATAAGTTCTTTTGGGCTCCAACCCTAACTTCACTTCCTTGTCTCTTTTGTAGGTTGCGATCGAATTGCCATACATCCTAGTTCAGACACTGGTATATGGTGTACTAGTCTACTCAATGATTGGGTTTGAATGGACTGTTGCTAAGTTCATTTGGTACCTGTTCTTCATGTACTTCACATTGCTGTATTTCACGTTCTTCGGAATGATGGCAGTAGGATTGACACCAAACGAGAGCATTGCAGCTATCATTTCACCAGCAATCTACAATGCATGGAACCTCTTCTCAGGATATCTTATACCTCGACCTGTAGGTTACTTTCCTGCCGCGTATGGTTTTGTTTTCATTTAGATTTCATTACCATATTGTTCTAATGTGACTCATGCATTTAACTCTCGCAAATTCAGAAAATTCCTGTCTGGTGGAGGTGGTACTGTTGGATTTGCCCTGTTGCATGGACATTGTATGGATTGGTTGCCTCCCAGTTTGGAAATATCCAAACTAAACTTGATGGCAAAGACCAAACCGTGGCTCAGTTCATTACGGAATACTATGGTTTCCATCATGACTTACTATGGCTTGTTGCCGTTGTGCATGTTGTTTTCACTGTGATGTTCGCTTTCCTGTTCAGTTTTGCAATCATGAAGTTCAACTTCCAGAGGAGATGAAGAAGATGCCATTCTTAGATGTAGTCGTAGAAGATGGTGTAGTCTCATATATAGAGTTTATTTTCATTCGGTACATAGAAAATGTAACAAGTTCCTTGTAAGTTGTAACCAGCTCATACTAGGCAGAGCAGAGGCAATAACTTCATCTCAAGAAATGCTGCTGTATTTGACAATTAAATAAATGCAGATTTTTTTGTTCATTCAATCT
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| CDS seq | ATATTTACTGAAGCTAAGTGGTATTGGATTGGGTTTGGTGCTTTGATTGGATATACACTCTTGTTCAACCTCCTTTACACTGTGGCACTTTCATTTTTGAAACCACTTGGTGACTCTTACCCATCAGTGCCTGAAGATGCACTGAAGGAAAAGCGTGCCAACCAAACTGGTGAAATTCTAGATAGCTGTGAGGAAAAGAAATCTAGAAAGAAGGAACAGTCCCAAAGTGTCAACCAAAAGCATTGGAATAACACTGCAGAATCTAGTCAGATCAGGCAGGGAATACTCCCCTTTGCACAACTGTCACTTAGTTTTAATGACATAAAATACTCAGTGGACATGCCTGAGGCAATGACAGCACAAGGAGTAACAGAAGAGCGCTTGTTACTTTTAAAGGGTGTTAGTGGTTCGTTTAGGCCAGGAGTACTTACCGCACTGATGGGTGTGAGTGGTGCTGGAAAGACTACTCTGATGGATGTATTAGCAGGGAGGAAAACTGGAGGATACATAGAGGGAGACATCACCATCTCAGGCTATCCAAAGAAACAAGAGACCTTTGCGCGTATATCAGGATACTGTGAACAAAATGATATTCATTCTCCACATGTAACAGTTTATGAGTCACTCGTATTTTCTGCTTGGATGCGGCTTCCTTCAGAGGTTGATTCAGAAACAAGAAAGATGTTCATAGAGGAGGTCATGGAGCTTGTAGAGCTCACATCACTGAGGGGTGCACTCGTTGGGCTTCCTGGAGTGAATGGCTTGTCAACTGAGCAACGGAAGAGGCTAACTGTTGCTGTGGAGCTTGTTGCTAACCCTTCGATCATTTTTATGGATGAGCCTACATCTGGTCTTGATGCTCGGGCCGCTGCAATTGTGATGAGGACCGTAAGGAAGACCGTTGACACTGGTAGGACTGTTGTTTGCACAATTCACCAGCCAAGTATTGACATATTTGAAGCATTTGATGAGCTTTTCCTAATGAAAAGAGGAGGAGAAGAGATATATGTTGGTCCATTGGGCCAGAATTCCTCAAAACTGATTGAGTACTTTGAGGGAATTGAAGGCATTAGTAAGATAAAAGATGGCTACAATCCAGCAACATGGATGTTGGAAGTAACCTCTACTACACAAGAGGAGATGCTTGGGATTGATTTCAGTGAAATCTACAAACGATCAGAACTATATCAAAGGAACAAGGAACTTATACAAGACCTAAGCACACCTACTCCTGGTTCTACTGATCTCCATTTCCCTACACAGTACTCTAGGTCGTTCTTCACACAATGCATAGCTTGCTTGTGGAAGCACAAGTTATCATATTGGAGGAATCCATCCTACACAGCAGTGAGGTTACTCTTCACCATCATCATTGCACTACTGTTTGGAACAATGTTTTGGGACCTCGGAAGGAAAACAAAAAAAGAACAGGATCTATTCAATGCTGTGGGATCAATGTATGCTGCAGTTCTTTACATTGGGATACAAAATTCTGGTTGTGTTCAACCTGTAGTGGTGGTGGAGAGAACAGTCTTTTACCGAGAAAGAGCTGCCGGCATGTATTCAGGTTTCCCGTATGCATTTGGACAGGTTGCGATCGAATTGCCATACATCCTAGTTCAGACACTGGTATATGGTGTACTAGTCTACTCAATGATTGGGTTTGAATGGACTGTTGCTAAGTTCATTTGGTACCTGTTCTTCATGTACTTCACATTGCTGTATTTCACGTTCTTCGGAATGATGGCAGTAGGATTGACACCAAACGAGAGCATTGCAGCTATCATTTCACCAGCAATCTACAATGCATGGAACCTCTTCTCAGGATATCTTATACCTCGACCTAAAATTCCTGTCTGGTGGAGGTGGTACTGTTGGATTTGCCCTGTTGCATGGACATTGTATGGATTGGTTGCCTCCCAGTTTGGAAATATCCAAACTAAACTTGATGGCAAAGACCAAACCGTGGCTCAGTTCATTACGGAATACTATGGTTTCCATCATGACTTACTATGGCTTGTTGCCGTTGTGCATGTTGTTTTCACTGTGATGTTCGCTTTCCTGTTCAGTTTTGCAATCATGAAGTTCAACTTCCAGAGGAGATGA
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| Protein seq | IFTEAKWYWIGFGALIGYTLLFNLLYTVALSFLKPLGDSYPSVPEDALKEKRANQTGEILDSCEEKKSRKKEQSQSVNQKHWNNTAESSQIRQGILPFAQLSLSFNDIKYSVDMPEAMTAQGVTEERLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWMRLPSEVDSETRKMFIEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGQNSSKLIEYFEGIEGISKIKDGYNPATWMLEVTSTTQEEMLGIDFSEIYKRSELYQRNKELIQDLSTPTPGSTDLHFPTQYSRSFFTQCIACLWKHKLSYWRNPSYTAVRLLFTIIIALLFGTMFWDLGRKTKKEQDLFNAVGSMYAAVLYIGIQNSGCVQPVVVVERTVFYRERAAGMYSGFPYAFGQVAIELPYILVQTLVYGVLVYSMIGFEWTVAKFIWYLFFMYFTLLYFTFFGMMAVGLTPNESIAAIISPAIYNAWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGNIQTKLDGKDQTVAQFITEYYGFHHDLLWLVAVVHVVFTVMFAFLFSFAIMKFNFQRR |
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| Function | ABC transporter G family member 32 [UniProtKB/Swiss-Prot:Q8LQX2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0342750 | OsNip_01t0342750-01 | Chr01 | 13524554 | 13528480 | + | RAP2018-11-26 | ||
| CDS seq | ATATTTACTGAAGCTAAGTGGTATTGGATTGGGTTTGGTGCTTTGATTGGATATACACTCTTGTTCAACCTCCTTTACACTGTGGCACTTTCATTTTTGAAACCACTTGGTGACTCTTACCCATCAGTGCCTGAAGATGCACTGAAGGAAAAGCGTGCCAACCAAACTGGTGAAATTCTAGATAGCTGTGAGGAAAAGAAATCTAGAAAGAAGGAACAGTCCCAAAGTGTCAACCAAAAGCATTGGAATAACACTGCAGAATCTAGTCAGATCAGGCAGGGAATACTCCCCTTTGCACAACTGTCACTTAGTTTTAATGACATAAAATACTCAGTGGACATGCCTGAGGCAATGACAGCACAAGGAGTAACAGAAGAGCGCTTGTTACTTTTAAAGGGTGTTAGTGGTTCGTTTAGGCCAGGAGTACTTACCGCACTGATGGGTGTGAGTGGTGCTGGAAAGACTACTCTGATGGATGTATTAGCAGGGAGGAAAACTGGAGGATACATAGAGGGAGACATCACCATCTCAGGCTATCCAAAGAAACAAGAGACCTTTGCGCGTATATCAGGATACTGTGAACAAAATGATATTCATTCTCCACATGTAACAGTTTATGAGTCACTCGTATTTTCTGCTTGGATGCGGCTTCCTTCAGAGGTTGATTCAGAAACAAGAAAGATGTTCATAGAGGAGGTCATGGAGCTTGTAGAGCTCACATCACTGAGGGGTGCACTCGTTGGGCTTCCTGGAGTGAATGGCTTGTCAACTGAGCAACGGAAGAGGCTAACTGTTGCTGTGGAGCTTGTTGCTAACCCTTCGATCATTTTTATGGATGAGCCTACATCTGGTCTTGATGCTCGGGCCGCTGCAATTGTGATGAGGACCGTAAGGAAGACCGTTGACACTGGTAGGACTGTTGTTTGCACAATTCACCAGCCAAGTATTGACATATTTGAAGCATTTGATGAGCTTTTCCTAATGAAAAGAGGAGGAGAAGAGATATATGTTGGTCCATTGGGCCAGAATTCCTCAAAACTGATTGAGTACTTTGAGGGAATTGAAGGCATTAGTAAGATAAAAGATGGCTACAATCCAGCAACATGGATGTTGGAAGTAACCTCTACTACACAAGAGGAGATGCTTGGGATTGATTTCAGTGAAATCTACAAACGATCAGAACTATATCAAAGGAACAAGGAACTTATACAAGACCTAAGCACACCTACTCCTGGTTCTACTGATCTCCATTTCCCTACACAGTACTCTAGGTCGTTCTTCACACAATGCATAGCTTGCTTGTGGAAGCACAAGTTATCATATTGGAGGAATCCATCCTACACAGCAGTGAGGTTACTCTTCACCATCATCATTGCACTACTGTTTGGAACAATGTTTTGGGACCTCGGAAGGAAAACAAAAAAAGAACAGGATCTATTCAATGCTGTGGGATCAATGTATGCTGCAGTTCTTTACATTGGGATACAAAATTCTGGTTGTGTTCAACCTGTAGTGGTGGTGGAGAGAACAGTCTTTTACCGAGAAAGAGCTGCCGGCATGTATTCAGGTTTCCCGTATGCATTTGGACAGGTTGCGATCGAATTGCCATACATCCTAGTTCAGACACTGGTATATGGTGTACTAGTCTACTCAATGATTGGGTTTGAATGGACTGTTGCTAAGTTCATTTGGTACCTGTTCTTCATGTACTTCACATTGCTGTATTTCACGTTCTTCGGAATGATGGCAGTAGGATTGACACCAAACGAGAGCATTGCAGCTATCATTTCACCAGCAATCTACAATGCATGGAACCTCTTCTCAGGATATCTTATACCTCGACCTAAAATTCCTGTCTGGTGGAGGTGGTACTGTTGGATTTGCCCTGTTGCATGGACATTGTATGGATTGGTTGCCTCCCAGTTTGGAAATATCCAAACTAAACTTGATGGCAAAGACCAAACCGTGGCTCAGTTCATTACGGAATACTATGGTTTCCATCATGACTTACTATGGCTTGTTGCCGTTGTGCATGTTGTTTTCACTGTGATGTTCGCTTTCCTGTTCAGTTTTGCAATCATGAAGTTCAACTTCCAGAGGAGATGA
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| Protein seq | IFTEAKWYWIGFGALIGYTLLFNLLYTVALSFLKPLGDSYPSVPEDALKEKRANQTGEILDSCEEKKSRKKEQSQSVNQKHWNNTAESSQIRQGILPFAQLSLSFNDIKYSVDMPEAMTAQGVTEERLLLLKGVSGSFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDITISGYPKKQETFARISGYCEQNDIHSPHVTVYESLVFSAWMRLPSEVDSETRKMFIEEVMELVELTSLRGALVGLPGVNGLSTEQRKRLTVAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRKTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGEEIYVGPLGQNSSKLIEYFEGIEGISKIKDGYNPATWMLEVTSTTQEEMLGIDFSEIYKRSELYQRNKELIQDLSTPTPGSTDLHFPTQYSRSFFTQCIACLWKHKLSYWRNPSYTAVRLLFTIIIALLFGTMFWDLGRKTKKEQDLFNAVGSMYAAVLYIGIQNSGCVQPVVVVERTVFYRERAAGMYSGFPYAFGQVAIELPYILVQTLVYGVLVYSMIGFEWTVAKFIWYLFFMYFTLLYFTFFGMMAVGLTPNESIAAIISPAIYNAWNLFSGYLIPRPKIPVWWRWYCWICPVAWTLYGLVASQFGNIQTKLDGKDQTVAQFITEYYGFHHDLLWLVAVVHVVFTVMFAFLFSFAIMKFNFQRR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.859266 | 0.800754 | 0.257019 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0609900 | SBH | 6.932333 | 6.204774 | 0.323454 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g24010 | RBH | 0.946172 | 0.473969 | 0.117900 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0342750 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0024790 | RBH | 0.021031 | 1.602868 | 1.683537 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0024420 | SBH | 0.029190 | 0.244356 | 1.845220 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0024750 | SBH | 0.142272 | 0.633226 | 4.707107 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0024120 | RBH | 0.077432 | 0.016066 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0023840 | RBH | 0.535193 | 1.116162 | 5.329120 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0222600 | RBH | 0.496417 | 1.700801 | 0.524038 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0015210 | RBH | 0.045770 | 0.159335 | 0.172736 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0217600 | RBH | 0.372247 | 1.43411 | 3.3960325 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0023780 | SBH | 0.018824 | 0.013805 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0023770 | SBH | 0.082753 | 0.685305 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0024020 | RBH | 1.011927 | 1.351395 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0024040 | SBH | 0.248899 | 0.000000 | 0.547184 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0023910 | SBH | 0.026593 | 0.470058 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G015400 | RBH | 0.026467 | 0.000000 | 0.141909 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0015160 | RBH | 0.113065 | 0.698106 | 0.217902 |
