Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0326100 | OGI:01037550 | 14/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:12509590-12511125 | ||||||||
| Gene Symbol | POD2, OsPOD2, PRX13, OSPRX13, RP-2 or RP-4, prx13 | ||||||||||
| DNA seq | GCAGCAAGCAGCTATAGCTAAGCTCTGAGCTCCATGGCCATGAAGTGCCTCCTCGTCTTCTTCCTCGTCGCCTTCTTCCCCGGAGCCGCGGTCAGCGCCGGGCTGAAGGTCGGGTTCTACAACGAGACGTGCCCGTCGGCGGAGGCCCTGGTGCAGCAGGCGGTGGCCGCCGCCTTCAAGAACAACAGCGGCGTCGCCGCCGGCCTCATCCGTCTGCACTTCCATGACTGCTTTGTCAGAGTACGTTTGCATCTATCACGATCGATCCTAGTTTCGTTTATAACTGCACTGTTTGGTGTAAGAACAGCTAGCTAACCTTGGTTGATTTTGTTTTCTTTGTTCAAAAAGGGAAACTATTTTAAACTCTCGAGATGGCATTCCCTCATTATTTGCATGTCATCCAAATGATTAAGAAAAAAAATCAACCAGGTATATTAATATGTGATAAATTATTCCACAAATATGCAAGGTCAAATTTAACTTCTATAAGTTTGAATGAAAAAAATAAATTTGATTAAGAATATTCGTTAACTAGCCATAGTTTATTTTTTTATAACCTGTAAAAGTTAAATTTTAACTTGCATATTTGTGGAGTGATTTATTATATATTAATCTATCTTGTTAAATTTTTTTAAAAAAATTCATAACTATTTGGATAACATGTAAATAACTAGAGGATGTCCTCACGAGAGTTTAGAATCCACTCCCACACAAAAATGACAAACTCTAGCAGTGATAAAAAGAAAAGGTGTCAATTTTTCATATTATAGACGCTGTGTTCGGCAAAAGGAGTTGGGAACCCACTCCCTCTTTTTCCACGCACACGCTTTTCAAACGGTTAAACGGTGTATTTTTTTTAAAAAAAATTCTATATGAAAGTTACTTTAAAAAATCATAAAATCATATTTATCTTTTTTTTTAAAAAAAATAGCTAATACTTAATTAATCACGTGTTAATAGACCGCTCCGTTTTCCTTGCGGGAGAGATTAGTTCCCATCCCTGCTACTGAACACAGTTCAAGGGAGAGTTAGCTAAGATATATTTATGATCATATGTTATGAAAGATCGGCATATACGTACCGCTGTTTTTTTAAAAAAAACAGATCACCTGAAGAAACATTAGTGCTCTCTATTACAATCACTGTGTTAGAAACAAAATACAACCATGAATCAAAAAAATAAAAGGAACAGAAGAAGGTATTACCATACTCCCTCCGTCCCAAAATATAAAGAATTGGAGGGATATAACATAATATTCATACTAATAGGATATGTCATACCTCTCTAAAATCTCTAATATATATTAGAGTAGGTATAATAGGTAAATTTTTGCTGGCTATATTGGGTCCAAACTGAATAAAATACAGAGTTAGAGAAGAAATGAGTAGAAAGAGGGTCTGAGCGGGCGACTAATTACATACTAGTCGCCAGCTCCACACAGGCTCCAATTCAACAGTAGCAGCGCATGACCAGTTTCGGTTGAGCTCCAGTAGCTGCTCACTTCTCAAGGAAAAATGAGTGTACAGGAAAGCTTC
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| CDS seq | ATGGCCATGAAGTGCCTCCTCGTCTTCTTCCTCGTCGCCTTCTTCCCCGGAGCCGCGGTCAGCGCCGGGCTGAAGGTCGGGTTCTACAACGAGACGTGCCCGTCGGCGGAGGCCCTGGTGCAGCAGGCGGTGGCCGCCGCCTTCAAGAACAACAGCGGCGTCGCCGCCGGCCTCATCCGTCTGCACTTCCATGACTGCTTTGTCAGAGTACGTTTGCATCTATCACGATCGATCCTAGTTTCGTTTATAACTGCACTGTTTGGTGTAAGAACAGCTAGCTAA |
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| Protein seq | MAMKCLLVFFLVAFFPGAAVSAGLKVGFYNETCPSAEALVQQAVAAAFKNNSGVAAGLIRLHFHDCFVRVRLHLSRSILVSFITALFGVRTAS |
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| Function | Peroxidase 1 [UniProtKB/Swiss-Prot:A5H8G4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0326100 | OsNip_01t0326100-01 | Chr01 | 12509590 | 12510760 | + | RAP2018-11-26 | ||
| CDS seq | ATGGCCATGAAGTGCCTCCTCGTCTTCTTCCTCGTCGCCTTCTTCCCCGGAGCCGCGGTCAGCGCCGGGCTGAAGGTCGGGTTCTACAACGAGACGTGCCCGTCGGCGGAGGCCCTGGTGCAGCAGGCGGTGGCCGCCGCCTTCAAGAACAACAGCGGCGTCGCCGCCGGCCTCATCCGTCTGCACTTCCATGACTGCTTTGTCAGAGTACGTTTGCATCTATCACGATCGATCCTAGTTTCGTTTATAACTGCACTGTTTGGTGTAAGAACAGCTAGCTAA
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| Protein seq | MAMKCLLVFFLVAFFPGAAVSAGLKVGFYNETCPSAEALVQQAVAAAFKNNSGVAAGLIRLHFHDCFVRVRLHLSRSILVSFITALFGVRTAS |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0326100 | OsNip_01t0326100-02 | Chr01 | 12510619 | 12511125 | + | RAP2018-11-26 | ||
| CDS seq | - |
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| Protein seq | - |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0327400 | RBH | 0.640626 | 1.401225 | 0.626892 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g22249 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0326100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0015000 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0014800 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0015030 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0014510 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0014580 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0209100 | SBH | 10.5575075 | 15.798923 | 4.188739 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0014500 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0204700 | SBH | 0.3920825 | 0.08412 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0014520 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0013000 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0014500 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0014620 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0014330 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G014690 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0014490 | RBH | 0.0 | 0.0 | 0.0 |
