Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0245901 | OGI:01025340 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:8038422-8039750 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCAGCATGCAGCGATGAGATAGAGCAAAGAAGTGAAGAACAGCGCAGCGTACGTACCATCTGTCTCATCATCCTCTCCGCGGCAGATCGAATGTGGCAGCTCCCAAGCGCGGACGTGGCGAGAGGAGTGGTACATCGTCGGCAGCTGGGGCATCTTGTACTTCTTGCACTCGAGCACGATTCTGGTGACCAGGTCGACGGCGAACATCCACGAGTTCCGCGAGGTGATCTGGAAGAAGAACACCACGCCGAGCTCCTTGGGGTGGAGGAGCGCGAGCACCGGAACGCGCCGCGGCATCATGGTCTTCCGGTATGTCACGTGGTCCCAGATCTCGTCGACGCGCACCCGGTGGCGGAGCGACCAAACCGACTCCTCCCCCGCATCAGACTGCTGCAGCGTCCACATGCTGATCATGATCGTCGATGGCGCGCCGCGGCCGGCGGCGGTGTCGTAGTCGTGGATCTGCACGAACGCCAGCTCGCCGTCGCTCACGTTCACGCACCGGTGCTTGGCGTGGTCCGCGTCGCTGGAGTACGGTAGCTTGCATCCCTCAGGGAGCGGCACGAAGCGCATGTCTGGCTTCGCGGCGAACGCGTCGCAGGTGAGGAGGCCGAAGGAGAGGTCCACCCACCAGAGCATCCCGGCGTGGACGATGACGCCGTCGCCGCACCACGACCGGCGGCCTGGCGGGTAGTTGACCTTCGTTGAAGCCCACCCTCCGAGTCCGAGCTCCTGGGAGTAGCGTAGTAGGGTGGCACGGTGGATGCCATTGCCGGACTCTATCTGGAGCTCGGCCAACAAGCGGATCGGGTGGTCGCCATCCGCTGCCGTTCTGCGGATCATGCCGACGTTCCCGGCGTAGAGGAGCCGGTACTCGTCGGAGCAGGGCGGGTAGAGGTAGGCCATGCGGAGCGTAGCGTGGCAGAGGATGTAGCCGCCGTCGTTGGCGCAGCTCGGTGCAGGGTCGAATCCGAGCGCGACGCCGGGGCCGAAATCGTGGGCGCTCCTCCTGGCGCCGCGGAGCAGGAGTCCGCCGGCGGAGTCGACGGCGACGACGTAGGGGTGGTCGTCGCGGTCGGGGCAGAAATCCCGAGGCGCGGGGGAGACAAAGACAGAGTCGCTCTGGCGCAAGGTAAGGAGGGAAACGCCCGGCGGGTCGCGCCAGTCGAAGGCGAGGTGGTCGCCGGCCTCGAAGTCGCCGTCGGAAGAGGACACGCTCGGGACGCAGGCCAGGATCACCCACGTGGCCTCCCGCGGCGGCGCCGCCATCCTCTCGTCCCGCCGGAACTTGGGCGCCGCGCCGTCGAACAGGTGCGGGCTATGCTCCAT
More
|
||||||||||
| CDS seq | ATGGAGCATAGCCCGCACCTGTTCGACGGCGCGGCGCCCAAGTTCCGGCGGGACGAGAGGATGGCGGCGCCGCCGCGGGAGGCCACGTGGGTGATCCTGGCCTGCGTCCCGAGCGTGTCCTCTTCCGACGGCGACTTCGAGGCCGGCGACCACCTCGCCTTCGACTGGCGCGACCCGCCGGGCGTTTCCCTCCTTACCTTGCGCCAGAGCGACTCTGTCTTTGTCTCCCCCGCGCCTCGGGATTTCTGCCCCGACCGCGACGACCACCCCTACGTCGTCGCCGTCGACTCCGCCGGCGGACTCCTGCTCCGCGGCGCCAGGAGGAGCGCCCACGATTTCGGCCCCGGCGTCGCGCTCGGATTCGACCCTGCACCGAGCTGCGCCAACGACGGCGGCTACATCCTCTGCCACGCTACGCTCCGCATGGCCTACCTCTACCCGCCCTGCTCCGACGAGTACCGGCTCCTCTACGCCGGGAACGTCGGCATGATCCGCAGAACGGCAGCGGATGGCGACCACCCGATCCGCTTGTTGGCCGAGCTCCAGATAGAGTCCGGCAATGGCATCCACCGTGCCACCCTACTACGCTACTCCCAGGAGCTCGGACTCGGAGGGTGGGCTTCAACGAAGGTCAACTACCCGCCAGGCCGCCGGTCGTGGTGCGGCGACGGCGTCATCGTCCACGCCGGGATGCTCTGGTGGGTGGACCTCTCCTTCGGCCTCCTCACCTGCGACGCGTTCGCCGCGAAGCCAGACATGCGCTTCGTGCCGCTCCCTGAGGGATGCAAGCTACCGTACTCCAGCGACGCGGACCACGCCAAGCACCGGTGCGTGAACGTGAGCGACGGCGAGCTGGCGTTCGTGCAGATCCACGACTACGACACCGCCGCCGGCCGCGGCGCGCCATCGACGATCATGATCAGCATGTGGACGCTGCAGCAGTCTGATGCGGGGGAGGAGTCGGTTTGGTCGCTCCGCCACCGGGTGCGCGTCGACGAGATCTGGGACCACGTGACATACCGGAAGACCATGATGCCGCGGCGCGTTCCGGTGCTCGCGCTCCTCCACCCCAAGGAGCTCGGCGTGGTGTTCTTCTTCCAGATCACCTCGCGGAACTCGTGGATGTTCGCCGTCGACCTGGTCACCAGAATCGTGCTCGAGTGCAAGAAGTACAAGATGCCCCAGCTGCCGACGATGTACCACTCCTCTCGCCACGTCCGCGCTTGGGAGCTGCCACATTCGATCTGCCGCGGAGAGGATGATGAGACAGATGGTACGTACGCTGCGCTGTTCTTCACTTCTTTGCTCTATCTCATCGCTGCATGCTGA
More
|
||||||||||
| Protein seq | MEHSPHLFDGAAPKFRRDERMAAPPREATWVILACVPSVSSSDGDFEAGDHLAFDWRDPPGVSLLTLRQSDSVFVSPAPRDFCPDRDDHPYVVAVDSAGGLLLRGARRSAHDFGPGVALGFDPAPSCANDGGYILCHATLRMAYLYPPCSDEYRLLYAGNVGMIRRTAADGDHPIRLLAELQIESGNGIHRATLLRYSQELGLGGWASTKVNYPPGRRSWCGDGVIVHAGMLWWVDLSFGLLTCDAFAAKPDMRFVPLPEGCKLPYSSDADHAKHRCVNVSDGELAFVQIHDYDTAAGRGAPSTIMISMWTLQQSDAGEESVWSLRHRVRVDEIWDHVTYRKTMMPRRVPVLALLHPKELGVVFFFQITSRNSWMFAVDLVTRIVLECKKYKMPQLPTMYHSSRHVRAWELPHSICRGEDDETDGTYAALFFTSLLYLIAAC |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0245901 | OsNip_01t0245901-00 | Chr01 | 8038422 | 8039750 | - | RAP2018-11-26 | ||
| CDS seq | ATGGAGCATAGCCCGCACCTGTTCGACGGCGCGGCGCCCAAGTTCCGGCGGGACGAGAGGATGGCGGCGCCGCCGCGGGAGGCCACGTGGGTGATCCTGGCCTGCGTCCCGAGCGTGTCCTCTTCCGACGGCGACTTCGAGGCCGGCGACCACCTCGCCTTCGACTGGCGCGACCCGCCGGGCGTTTCCCTCCTTACCTTGCGCCAGAGCGACTCTGTCTTTGTCTCCCCCGCGCCTCGGGATTTCTGCCCCGACCGCGACGACCACCCCTACGTCGTCGCCGTCGACTCCGCCGGCGGACTCCTGCTCCGCGGCGCCAGGAGGAGCGCCCACGATTTCGGCCCCGGCGTCGCGCTCGGATTCGACCCTGCACCGAGCTGCGCCAACGACGGCGGCTACATCCTCTGCCACGCTACGCTCCGCATGGCCTACCTCTACCCGCCCTGCTCCGACGAGTACCGGCTCCTCTACGCCGGGAACGTCGGCATGATCCGCAGAACGGCAGCGGATGGCGACCACCCGATCCGCTTGTTGGCCGAGCTCCAGATAGAGTCCGGCAATGGCATCCACCGTGCCACCCTACTACGCTACTCCCAGGAGCTCGGACTCGGAGGGTGGGCTTCAACGAAGGTCAACTACCCGCCAGGCCGCCGGTCGTGGTGCGGCGACGGCGTCATCGTCCACGCCGGGATGCTCTGGTGGGTGGACCTCTCCTTCGGCCTCCTCACCTGCGACGCGTTCGCCGCGAAGCCAGACATGCGCTTCGTGCCGCTCCCTGAGGGATGCAAGCTACCGTACTCCAGCGACGCGGACCACGCCAAGCACCGGTGCGTGAACGTGAGCGACGGCGAGCTGGCGTTCGTGCAGATCCACGACTACGACACCGCCGCCGGCCGCGGCGCGCCATCGACGATCATGATCAGCATGTGGACGCTGCAGCAGTCTGATGCGGGGGAGGAGTCGGTTTGGTCGCTCCGCCACCGGGTGCGCGTCGACGAGATCTGGGACCACGTGACATACCGGAAGACCATGATGCCGCGGCGCGTTCCGGTGCTCGCGCTCCTCCACCCCAAGGAGCTCGGCGTGGTGTTCTTCTTCCAGATCACCTCGCGGAACTCGTGGATGTTCGCCGTCGACCTGGTCACCAGAATCGTGCTCGAGTGCAAGAAGTACAAGATGCCCCAGCTGCCGACGATGTACCACTCCTCTCGCCACGTCCGCGCTTGGGAGCTGCCACATTCGATCTGCCGCGGAGAGGATGATGAGACAGATGGTACGTACGCTGCGCTGTTCTTCACTTCTTTGCTCTATCTCATCGCTGCATGCTGA
More
|
|||||||
| Protein seq | MEHSPHLFDGAAPKFRRDERMAAPPREATWVILACVPSVSSSDGDFEAGDHLAFDWRDPPGVSLLTLRQSDSVFVSPAPRDFCPDRDDHPYVVAVDSAGGLLLRGARRSAHDFGPGVALGFDPAPSCANDGGYILCHATLRMAYLYPPCSDEYRLLYAGNVGMIRRTAADGDHPIRLLAELQIESGNGIHRATLLRYSQELGLGGWASTKVNYPPGRRSWCGDGVIVHAGMLWWVDLSFGLLTCDAFAAKPDMRFVPLPEGCKLPYSSDADHAKHRCVNVSDGELAFVQIHDYDTAAGRGAPSTIMISMWTLQQSDAGEESVWSLRHRVRVDEIWDHVTYRKTMMPRRVPVLALLHPKELGVVFFFQITSRNSWMFAVDLVTRIVLECKKYKMPQLPTMYHSSRHVRAWELPHSICRGEDDETDGTYAALFFTSLLYLIAAC
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0245700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g14340 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0245901 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0010420 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0010050 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0010390 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009910 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009960 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0132800 | RBH | 0 | 0 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0132100 | RBH | 0 | 0 | 0.0422665 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0009920 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009990 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009920 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0010080 | SBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009860 | SBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G010020 | RBH | 0.0 | 0.0 | 0.110753 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009890 | RBH | 0.0 | 0.0 | 0.0 |
