Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0233500 | OGI:01023090 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:7389373-7393708 | ||||||||
| Gene Symbol | CYCA1;1, CycA1;1, CycA1;os;1, Orysa;CycA1;1, CYCA2.3, OscycA1;1, CYCA1-1, OsCYCA1-1 | ||||||||||
| DNA seq | ATTCAGAATGAGCACTGTTGAAAATGTGGTGCTCTTATTGAGAATTTCACAAAAGCAACACGAACAGAGACTCTATCATACATCAACCTAGGAGACGCCCAGGTTGGCAGCTAATATCAAACAAGATGTTTAAAGCTTTGCTGCAGGACTCCGATGTACAAAGTACTGAAAACCATGGATCATCTAGGTACAGGGAAAAGAAGATAGAAGAAAGCACATCAGTACCATAAAAGTTACCACACACAGCAGAAGCATCGATCTATCTACACTCAGCCAAACCGCCTGAAAGAACCAGGGGGGGGGGGGGGGGGGCAAGCAGCATGCCTTGCATCAAGGTTATCTGAACGGTCTACGGCACAACCTGGCATAGGTGCCTCTGGAGGAAGAATTCAGTCAGCAACTGTAACTAATCCTTGGTTTATTTTTCTAGTTCAGCATGTTGCGTCGCGAAAGAATTCGGTCGGTATTGAGGGTGGGCAGGGCTTCTTCGCCACAAATTTGTACTGCAGAAACAAAGGTACAGAAGGTCAGCATTAGAAACAGTACAGATAACTGAAGAAATGGGGAGGATATGCCGTTTATACCTTATGTTGGGTATACTTCTCCCTGATTGCAGGAAGGTTACTCCCGGGACCAACGCTAAAAAGGCGGTGCAATGCCTTTACACAGTCGCTTAACTCTGACGACTTGTATTGTGTGTAGTGAGCAAGGGTGGAATTCTGCTTCAAATTTACAATGAGAAGCATATGTTAGCTCTTGTAATTTTTTTATTTGAATGCTGATATAAAAGATGTATGGAAAGTTCAATACGATGATGCCACCACTTACCCAAGGGTGCTTTGTTGGCTGCAGTATGAATTTGGCCAAGAAAATAGCCGATGCCGCTACTAGTGAAGGAGGGTAAGAAAGTAGATTGTACTCCAGCAGTGATAGCTCAGCAACATAATTGGCTAGGAACTCAAGATGCAATGCTGGATCCTGCACGATGAAAAGCTGTTAATGCAATGCACCATATAACTATTATGGAATTGCAGCAAGCAGGAGATGATTAAGAGAGCAGCACCTCATCCGATACTTGTGCAACACGGACAAATCTCCTGTTGTAGGCAATAAGAGAGTTATTAGAGTTCGATTCATTCCAGCACTATAGACATCGATGAGATGAAAGGGAATAGAACCTCAAAAAGCATTTTGCTGTAGGTGCAGTCACTTCAAACTTCAGGTAATTCAGGACAGAAGCTTCCATTTCCAAAACCTGATAATCTATGTGTTAGTCATGGACATAAACACAGCAATGTTAACAGATATGCAAAACAAACCTCATCTCTGAAGTATGTGTTGTCAGTTATATAGCAGAATTCTTCTACTTGAGGTGCACATATCTCCTCGTATTTTCTGATATAGGAACAAGCCAAAATCAGTACACAAAACTCAGATGCAAACTGAGAAACACATTTAAAAAAATTGCTAGTCAGATCTTACGCAGCAATAAGCATACAAGCAACTCCAAGTAATTGCAGTCTTTGACGATTGATCTCATTGCCAGAAAGATAACGATCAATGTAGTTAACTGTCAGGTATAATGTATCAGGAACAAGACGATATTCTTCAGCGACCTGCACAAAGGAAAAGCACAAATACAGTGGTAAGTAACGAGTGTGGTCTTTAGGCTCCAATCAACTAAAAAAATGTTTGGTATAAAAGCTTACTTCCACAAGCCAGTCTATCAGGATCGCTCTCATGCTTGGGTTTACATCCTTTTGGATTGTTTCCATAAAATCAGTTGATGGACGTTTCCTGGTCTGCTTCAAGTCAAATAGAAAATCACAATGTAAATATGAAATTCAACCTAGATTTGAAACCACTGTGCTCAGGTCAGATTAATTGTCATTTGGTCAAACTGACTGCAGTAGTGCAGTCCATGTCACAGCAAAAACAATGAGCAATTGAAAAATACTTCAAGAGCATTGATTACAACAATTGAAATGTATCAATTCATCGGTTCAGTCAATGCTTTAAGCAGATAACTCCATTAAAATTTCTCCATATTATACTGTGCTTCTACTGGTTCTATAAGGAATTTCAATATGATGGCCATTAAATGGAACCCACTATTCAGAAAAAAAAAGTATTCTAGAATGTTTTATGTAAGGTGTTTACACAATATGCAGAACAAAACTACTGAAAATTGATGGTCACAAAGCATGTCTGGTATTAGATGATAAGGTGCACCAACAAAGCGAAAAGCAGAAAAGAACGGATTGTGGTGAAATGTGAAAAATATCCTGATAAATTACATTGGAATACTGCCTTATATCAGTGATGTGCACTTATTCTCTTCTTAATTTATGGTCTCATCAAAGTAAACTTTTTTTACTTGTGTTTCATATGGATGCAATCAAGTCTCAAATCATGAGGAAGCAAAACAAAGCCTTCCTATGAAAACATACTACAATAAGGTGCTCAAGGGAAATGTTTTCAGAGAAATAAGGTGTAGACAAGAATGTATTACCTCAGCCTCGCGCAAGTGCATGTAGATATCAGAAGCAAGAGTAGCACACAACTGCGGATCCTCGTAGTTATTGTCAACATCACAAATTTGGTCGATTTCCATTGGGGAAGGAGCATCCTTCTTCCACTTAGTTTCTGCGAAACAAACAAGGGATAAGATCAATCAACCATTCCAATAGAATGCACCATATAGCACAAATTTTTCTAGCTATAACTGTGCATTTCAGCAACCAAAACACACCTTCGACATCTCTATCCTCTGAGATACGCAGGTTTTCGTTTGCTCTTCGCTGCAAGGAACCTAGAACTGAGGAGGAATCCCCATTATCAATGTACTCAAATTCTGGGCTTTTCATTGAGTCACACGTCGACATCGTCTCGTCAACCGAAACTGAATCTCCTGAATGCATAGGGGAGACGAAGCTGCTGCAGGGTACAGTGACAGGTGCCAGTGCAGCAGTCGGCACAATGCTAGGCACTTTAGGAGGAAGAACAGACTCCTTCTGTGTGGCGCTCTCATGGCGGGATATGGCCGGAGCCGGCTTGGCGGAAGCCGATTTCACCGCCGAGGCCCGATTCGTGCCCACATTGCGGCCACTGGCCAAAGATCCCTTCTTCACTGGTGCAGCTGAGGCAGCTAAATTCAACTTCTGCAGGAGGATGGGACAAGAGAAATCAATTTATAATTTATTTCAATCTGTTCATTTGGGATTCCACAGACCACAAGCATGAAAAGGAATAAAAATTTAGAAACATTAGCAGCACGCAAGTATCATATTACCAATAGAAGATTCCAAAGCAAGCAAACGTACAAAACACTTCACAAATACCAAGAAAGCTTGATTTTTGAACTTTTGAAGGTGCCAATAAACTTTATGCCTGTTGACCATGGATGCTCCCCAAGAAATCAATCAATCAAATAACCATGAAAAGAAGCCTCAAAATCAGCAAGGAAAAATCTTGTGGATTGAAAGAGGAGAATCCTCAAAATCAGCAAGGAAAAATTTGGCAGAGGTCCAAATTTGAATGGGAACAGCAATTAGAAAACCAAAAGGCAATAAAATCTTGGGGATTGGAAGAGAAGAACCGTTTGTAGGTTAAACAACGAGAAATTGAAGAAACGAAAATCTTGTACTCTGGAAGAACTCAAGAAGACGGATTCAAGAAACACTATTTTTCGCTTGAAACCAACAGATCAAGGCATATGCCCACCACAAAGATGGAAAAAAAAAGAAGCAAAATCATATACAGATCGCTTCGGCAATTTCCGAATCAAGAAATCCCCCAATCCAAGAACTGCAGAAAAGCGAACTCGATCCGTCCCAAGAACCCAGGAGGAACCACCAAAAGCAAAAGAAACTAAGAAGGCCAAGCCAAAAACCATTCCAACCACATCACGGACCGAAAGATCTCGAACCCAAACCGCGCAAAGAACAAAGCCTTCGAGAAAAGAAAAAAGAAACTCCCCAACCCCCCCACAAGCGATCCATCACGCACCGCATTGCCGGCCTTCCCTGGGGCGCCACCACCAGCGGCGACGTTGCTGATGTTGCTAAGCGCCACGCGCTTCTTTGCCGCGGCGGCGCCCGCTGCCGCCTTCCCTCCTCCTCCTCCTCCTCCCTCCCCCACCGCGGGTCGCTTCGCCGCCGCCGCCGCCGCCACCGAGGACGACGACGACGAGCGGCGGGAGGCTGCTAGGTTGCTCGACATCGGCGGACGGCAAACTACCACCGCAACCCACCTCCTCCTCCTCCGGGCGCTAGGGTTTGCGAGGGCGGAAGCGAGGGTTTGGGTGCTCTTCCCGACAGAGGCCAGGGGGATTGGG
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| CDS seq | ATGTCGAGCAACCTAGCAGCCTCCCGCCGCTCGTCGTCGTCGTCCTCGGTGGCGGCGGCGGCGGCGGCGAAGCGACCCGCGGTGGGGGAGGGAGGAGGAGGAGGAGGAGGGAAGGCGGCAGCGGGCGCCGCCGCGGCAAAGAAGCGCGTGGCGCTTAGCAACATCAGCAACGTCGCCGCTGGTGGTGGCGCCCCAGGGAAGGCCGGCAATGCGAAGTTGAATTTAGCTGCCTCAGCTGCACCAGTGAAGAAGGGATCTTTGGCCAGTGGCCGCAATGTGGGCACGAATCGGGCCTCGGCGGTGAAATCGGCTTCCGCCAAGCCGGCTCCGGCCATATCCCGCCATGAGAGCGCCACACAGAAGGAGTCTGTTCTTCCTCCTAAAGTGCCTAGCATTGTGCCGACTGCTGCACTGGCACCTGTCACTGTACCCTGCAGCAGCTTCGTCTCCCCTATGCATTCAGGAGATTCAGTTTCGGTTGACGAGACGATGTCGACGTGTGACTCAATGAAAAGCCCAGAATTTGAGTACATTGATAATGGGGATTCCTCCTCAGTTCTAGGTTCCTTGCAGCGAAGAGCAAACGAAAACCTGCGTATCTCAGAGGATAGAGATGTCGAAGAAACTAAGTGGAAGAAGGATGCTCCTTCCCCAATGGAAATCGACCAAATTTGTGATGTTGACAATAACTACGAGGATCCGCAGTTGTGTGCTACTCTTGCTTCTGATATCTACATGCACTTGCGCGAGGCTGAGACCAGGAAACGTCCATCAACTGATTTTATGGAAACAATCCAAAAGGATGTAAACCCAAGCATGAGAGCGATCCTGATAGACTGGCTTGTGGAAGTCGCTGAAGAATATCGTCTTGTTCCTGATACATTATACCTGACAGTTAACTACATTGATCGTTATCTTTCTGGCAATGAGATCAATCGTCAAAGACTGCAATTACTTGGAGTTGCTTGTATGCTTATTGCTGCAAAATACGAGGAGATATGTGCACCTCAAGTAGAAGAATTCTGCTATATAACTGACAACACATACTTCAGAGATGAGGTTTTGGAAATGGAAGCTTCTGTCCTGAATTACCTGAAGTTTGAAGTGACTGCACCTACAGCAAAATGCTTTTTGAGGAGATTTGTCCGTGTTGCACAAGTATCGGATGAGGATCCAGCATTGCATCTTGAGTTCCTAGCCAATTATGTTGCTGAGCTATCACTGCTGGAGTACAATCTACTTTCTTACCCTCCTTCACTAGTAGCGGCATCGGCTATTTTCTTGGCCAAATTCATACTGCAGCCAACAAAGCACCCTTGGAATTCCACCCTTGCTCACTACACACAATACAAGTCGTCAGAGTTAAGCGACTGTGTAAAGGCATTGCACCGCCTTTTTAGCGTTGGTCCCGGGAGTAACCTTCCTGCAATCAGGGAGAAGTATACCCAACATAAGTACAAATTTGTGGCGAAGAAGCCCTGCCCACCCTCAATACCGACCGAATTCTTTCGCGACGCAACATGCTGA
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| Protein seq | MSSNLAASRRSSSSSSVAAAAAAKRPAVGEGGGGGGGKAAAGAAAAKKRVALSNISNVAAGGGAPGKAGNAKLNLAASAAPVKKGSLASGRNVGTNRASAVKSASAKPAPAISRHESATQKESVLPPKVPSIVPTAALAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPEFEYIDNGDSSSVLGSLQRRANENLRISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRKRPSTDFMETIQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQRLQLLGVACMLIAAKYEEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEVTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFRDATC |
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| Function | Cyclin-A1-1 [UniProtKB/Swiss-Prot:Q7F830] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0233500 | OsNip_01t0233500-01 | Chr01 | 7389373 | 7393708 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGAGCAACCTAGCAGCCTCCCGCCGCTCGTCGTCGTCGTCCTCGGTGGCGGCGGCGGCGGCGGCGAAGCGACCCGCGGTGGGGGAGGGAGGAGGAGGAGGAGGAGGGAAGGCGGCAGCGGGCGCCGCCGCGGCAAAGAAGCGCGTGGCGCTTAGCAACATCAGCAACGTCGCCGCTGGTGGTGGCGCCCCAGGGAAGGCCGGCAATGCGAAGTTGAATTTAGCTGCCTCAGCTGCACCAGTGAAGAAGGGATCTTTGGCCAGTGGCCGCAATGTGGGCACGAATCGGGCCTCGGCGGTGAAATCGGCTTCCGCCAAGCCGGCTCCGGCCATATCCCGCCATGAGAGCGCCACACAGAAGGAGTCTGTTCTTCCTCCTAAAGTGCCTAGCATTGTGCCGACTGCTGCACTGGCACCTGTCACTGTACCCTGCAGCAGCTTCGTCTCCCCTATGCATTCAGGAGATTCAGTTTCGGTTGACGAGACGATGTCGACGTGTGACTCAATGAAAAGCCCAGAATTTGAGTACATTGATAATGGGGATTCCTCCTCAGTTCTAGGTTCCTTGCAGCGAAGAGCAAACGAAAACCTGCGTATCTCAGAGGATAGAGATGTCGAAGAAACTAAGTGGAAGAAGGATGCTCCTTCCCCAATGGAAATCGACCAAATTTGTGATGTTGACAATAACTACGAGGATCCGCAGTTGTGTGCTACTCTTGCTTCTGATATCTACATGCACTTGCGCGAGGCTGAGACCAGGAAACGTCCATCAACTGATTTTATGGAAACAATCCAAAAGGATGTAAACCCAAGCATGAGAGCGATCCTGATAGACTGGCTTGTGGAAGTCGCTGAAGAATATCGTCTTGTTCCTGATACATTATACCTGACAGTTAACTACATTGATCGTTATCTTTCTGGCAATGAGATCAATCGTCAAAGACTGCAATTACTTGGAGTTGCTTGTATGCTTATTGCTGCAAAATACGAGGAGATATGTGCACCTCAAGTAGAAGAATTCTGCTATATAACTGACAACACATACTTCAGAGATGAGGTTTTGGAAATGGAAGCTTCTGTCCTGAATTACCTGAAGTTTGAAGTGACTGCACCTACAGCAAAATGCTTTTTGAGGAGATTTGTCCGTGTTGCACAAGTATCGGATGAGGATCCAGCATTGCATCTTGAGTTCCTAGCCAATTATGTTGCTGAGCTATCACTGCTGGAGTACAATCTACTTTCTTACCCTCCTTCACTAGTAGCGGCATCGGCTATTTTCTTGGCCAAATTCATACTGCAGCCAACAAAGCACCCTTGGAATTCCACCCTTGCTCACTACACACAATACAAGTCGTCAGAGTTAAGCGACTGTGTAAAGGCATTGCACCGCCTTTTTAGCGTTGGTCCCGGGAGTAACCTTCCTGCAATCAGGGAGAAGTATACCCAACATAAGTACAAATTTGTGGCGAAGAAGCCCTGCCCACCCTCAATACCGACCGAATTCTTTCGCGACGCAACATGCTGA
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| Protein seq | MSSNLAASRRSSSSSSVAAAAAAKRPAVGEGGGGGGGKAAAGAAAAKKRVALSNISNVAAGGGAPGKAGNAKLNLAASAAPVKKGSLASGRNVGTNRASAVKSASAKPAPAISRHESATQKESVLPPKVPSIVPTAALAPVTVPCSSFVSPMHSGDSVSVDETMSTCDSMKSPEFEYIDNGDSSSVLGSLQRRANENLRISEDRDVEETKWKKDAPSPMEIDQICDVDNNYEDPQLCATLASDIYMHLREAETRKRPSTDFMETIQKDVNPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNEINRQRLQLLGVACMLIAAKYEEICAPQVEEFCYITDNTYFRDEVLEMEASVLNYLKFEVTAPTAKCFLRRFVRVAQVSDEDPALHLEFLANYVAELSLLEYNLLSYPPSLVAASAIFLAKFILQPTKHPWNSTLAHYTQYKSSELSDCVKALHRLFSVGPGSNLPAIREKYTQHKYKFVAKKPCPPSIPTEFFRDATC
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.000000 | 0.719629 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0237100 | SBH | 0.783287 | 2.034809 | 4.001002 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g13260 | RBH | 0.0 | 0.000000 | 0.182517 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0233500 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0009550 | RBH | 0.000000 | 1.321321 | 0.215217 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0009190 | RBH | 0.0 | 0.566216 | 0.206938 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0009540 | RBH | 0.0 | 2.120270 | 0.636966 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0009070 | RBH | 0.0 | 0.084009 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0009100 | RBH | 1.091347 | 5.510009 | 7.886757 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0120500 | RBH | 3.526861 | 1.790053 | 3.6036205 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0009130 | RBH | 0.000000 | 0.354698 | 0.163175 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0120500 | RBH | 4.778981 | 2.0254115 | 24.3793385 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0008180 | RBH | 0.000000 | 0.107530 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0009160 | RBH | 0.0 | 7.405395 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0009110 | RBH | 0.000000 | 11.223574 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0009240 | RBH | 0.181512 | 0.307477 | 0.992887 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0009030 | RBH | 0.0 | 2.203825 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G009180 | RBH | 0.0 | 3.081811 | 1.238556 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0009060 | RBH | 0.0 | 0.000000 | 0.988928 |
