Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0198200 | OGI:01017630 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:5329063-5335518 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AAGTTAAAGTTTGCACTTCAAAATCCCCCCATTATCTTGTCACAAAACCGGTTGTTCATATTATTAGATCTTAATCTTACAAAGGACCAGCTCGGGAAAATGCACTTCACGACACTGATCTTCCATAGCATATGGAGCCTAAATAAAGATTTTTTGCCCATTTTTCCTGCAAATAGATTTATCAGATTTATTTGTTATGTGGAGTTCAAACAAGGCACAAGAAGAAGGTATAGTCACCTTTACATGCTGGCCAGGAAAAGCAGATGTTCTCAGTGTCTCCTGTGTTTCATCGTTAGGCTTTCTTCTAGGTATGCTCAAGATCAAAGCCACCTGGTCACATGTGGCTGCTGTTGCAGTTATGCGATAACCACTATCCCAGCGTTGATGGATTCCTTCACTCGGATATAAGAAATCAAGTTCTACTACCTACAAAAGAGATATGCGAGATAATAAAATCTCAAGACTTTTACATATTCAATTGATAGTCAGTGTAGCTTGCTGCTAAAATGAATTCAATTTTACAAGGCTCTTGGACACTCCAAACGTACCTGATGTGTGAAACCAGCGTTCCGGGACATAACCACAGCCCATCGGCTTCCTGCTGTGGCCAAGGCAGTGACATAGAACCCCTCCTTCCACTTTTTGTTTATCCATTTGAAGGGAAATGAATCACTTACTTTGTAGGATTGCTGTGCATATGGCGTTCCTGAGAAGCATTCAAGTCAGTTCTTGGCTTCTTGCTCATAATAAATACCAACAGTAAACATTACAAGACACCCAAGTGTTTGCGCTGTGAATGGCTTCTCACTACACATATTAACGGTGGTACTTTCTGAATACTTTGATGCATCAACATTTAACAAATTTCACCTCAACAGTAAACATTACAGGATACCCAAGTGTTTGCGCTGTGAATGGCTTCTCACTACACATATTAACGGTGGTACTTTCTGAATACTTTGATGCATCAACATTTAACAAATTTCACCTCATCCAGTATTATCTTGGTCAAGGTAACAATATTAAGTGGTATGTTTATCCAAATGTTGTCTAGCAGTTTATAGTGATTTCATCATAGCTAGGGGCAAAAGATTGACAGCCTCATCGGTTGCCCATATTTCCTAATAAGCCAAAATGATTTATTAGAAAATAAAAATTAATTTATAGGTAAAAAATTGTATATGTGTTCTTAGCAACTTAAAAGCCAATATTAAAAAAACTATGTTCAAAATATCTTAAAATTAACTTCAAAATTAAGTTTGAAAATTCAAATTTTGGCTTTTGCTTTGGCTTATTAGGCCAACCAATGAAACCTTGATTTTATATATTAAACCCATGTCATGTACTAATGTTATCAACTATATGCTGCTTAGCATAGTGTTGATTTACCCCAAAGAGAACATTTGTTTGAGAATTTTTCTTTATTAAAATCAAATATTTATCATGGTTTTGATTAATATCCAGTTCTTTTAGTATTCGATTACGTGTTTCAGTACACATTTGATGAGTTTACTGTAGTTCTTCTCTGAGATGAATCGTTGCGCTTGTTACATAATGATCCTGGCACCGAACATGCAAATTCAGGACTAAAGGCATCAAAATGAAACTGTATACCTGTTGACATGATCACCACCGAGCTTCCATTATTTGAACCAGCCAAAGAAGTAATATAGTAATTTCTCTCCCACTGCTCCATTATCCATTCCTATCAAAGCGCACAGTTAAAGTTGTGATTATACATTTATCTCAGTGTTCTAAAAGTCAGCTCCAGGCGCCGGTTAGCCGCCGCGATTAGGCATTAGATGGTGCATTAAGAGGCTGAACTAACTTGGGTGGTGTTTCCTTGCTATTTTAGTGTTATATAGTCTTGTTTTTATGCAATATGCTTGCTAATTTCTTGGATTTGACTAGTTAGCCTAACCTAGGCGCCCCCCAGCCGCCGGACTAGTGCCTGGCACCTTGTTGTCCCAAAATATAGGCAATTCTAGAGTTCTTCAGGGGGTTAAGGAGAGGTGAAATTAAAACAGGGATGGTTGTGATTGGTTGAGATGAGGAAGTAGATGGAGAAATTAAATAAGAGATGGCGGTGATTAGTTGAGATGATGGAATGGGTGAAGTAGCAACATTTTGAGACAAATTTTGAATGCAAGAAGTTACTATATTTTGGGACGGAGGGAGTAGAAAACAATACCATGAGATGGCAATTAGGATAGAGCTGAGTATGCTTGATTAGTAACCAACCACAGATAGGAAAAAAAATACATACTCAATAGTAGGATGACACGCAATTATTTACCTTGTGAAGAAAGTAATGGGAGAGTTCATGTACTTGGGCGGTAAAACCAGTGCCAGCATCCATAATTAAAGCCCACAGATCTGAACAGGATGAAACTGAACTTATAAACAAACCATCTTCATTTCCTTTTTGAATATGTGGTGCTAATCTATCATCTGCTACATTGTAGTGGTATCTGAAAAATAAATGTGGTCAGACAATAGAGTATTATTTTACTGCTACCAAGCAGATTACTGTGCCATACCTCTGTTTCATTGGCCGACGGGCATTGTACACACTAATCCACTGGGTCGCTGGCATTCCCATTCTAATCTTTTTCTTAGGTTGCTCCTCATCTTCAGCCGCTGTGAGGCGGCCTCTCTTCTGACCAACCTGATATACAAGCTGGCAGCAATCCAACAAAGCATTATGCAGGTAGCCCGCTATTACATAAAGAAATAAGGAATTATTTAATATGTCACTAGATTTTGCCAGTTAACTATTTTACCACCAAAATACATTTGATATTGAATATGTCACTGTCTCTAAAGACCAATCTGATCATGTGGTCTTAATGGCAGGACATTGACTATGTTTTAGTCTATGCAGGTCATACTCGTTATTTGGTGTTTCATATTACAGAAAGCTAGGACAGGAAGTTCAAAGGCAGGTTCACAATTGAGTTGTTTCATAGTGGGACATAGATTTCCTTCACTAAAACCTAAAAGCACAAGGTTGGCATTGAACTAATTGGAATTCTTGGGAAATAATATTAGTTATAACACTAGTGATGACTCTCAAGCCCAAGGATAGAATCAGGTAACTTTAATTATTTACTAGTGCTTTGAATTTTGATCCGAGAAATAGGGAATTGGAACTGAGATTCCTACACGATCATTTTTTCTGACAGATGATACAGACGCAGATTAAAATGGTTGAAGGAATAATGTACCTTCTGGGCACCATCGGTGTTTAATGGTCTTCCATCTGGATTTGGACCAACAATGCCATCAAAAAGAGCAATGCACTTTGCATAGTTTGGCTCTTCGTCGAACTTCAAGTTCACAACATACTCAACAAATTGACGAAATGGTGGTGGACCAATGCCACATAAAGATTCTGGAGAGGTTGCCATCTTTTTCTTGCAAACAAGAAAACCTTTATTCTCTCCCTAAGTTCATTCATGAATTACAAAACGAAATTAGTGCATGTAGCAACAAAAAAGTCATAAAATCAATCAAAATTAACCTGGAATCCTTGCCAAGGCAGGCGGCCACGGAGAAGGAAAATAAGTGTGTATGCAAGGGATTCAAGGTCATCTCTCCTGCATCCAGTTCTTCCCAAGTGGGCATGCACACTAGCATAACGAACAGTACCCCTGTTTACAGTAGCAGACAAACAGGAAGAGCGCATCAATAAAGTAATGTGCAAAATGATAGGCATCGTAATAAACTTTCTATTCAAACCTAAAGATATCAGGTCTCTGGTCATATTCAACATGCTTTCCTGTACCAGCATCTTTCCATTTAGTAGCTGCATTGGAACAAAACAAGTTCATAAGGAAGCAACATAAATAATTACATGACAACAAATTGACACAATATAAAGATAAAAGTTGATTAAGAATTACCTAGTCCAAGATCAACAAGAAAAAGTTTCTTCCCTTCAGGGGTATCTGGAGGACCAAGCAAAAAGTTCTCAGGTTTCACATCACCATGGACGTACCTGTCATAAACAAAATTTATTAGCTAAAACTTCAGAGACGCCATGTGAAACACTCTTACGGAACATCTGAAGAGCAGGTCGAGTTACCCTTTAGCATGCATCTTCTCTAGTATGGAGATGGCCTCTATACCTATACAAGCAACCATCTCAACAGACATCCTGTAAAAGAAGGCCACAAATTAAAAAATTGAAAAGGCTGCATTGAACTGTCAAGATTAATTAGGAAGAGTCAAAAGATGCCCACGAGTGGGAATTGTTATTCCAAACATCCCACAGGCTCGGTCCCAACATATCCATAACCTGCATGAAAAATGTGTATGGTTAGAAAAAACGTAGTTGATAATTCTTAAGAGAAAAAGAAACCAATCAAACCATAAACCGGAAAGCAAAAAAAAAAAAAAATCTAGTTCATGCTCCATTACCATGATGTAAAACCCGCCCTGCTTTCCTTTGTAGTGTACCCGTGGGACACCATGATTTCCACTAAGAGTACTGCAAGAGAAGGTTTATCATAAGTAATCAATGTAAACGTATCCAAATAATTTGGTATTCACAAAGAAAAACTTACACAGTAGAGAGCCAGAAGAAGAAATACTTACTTGTAGACTTGCCATTCATAGGGAGCTCCATAGCTGCAACCTTTGCTGGTTCGATGTTCGAATTTTAGCGCAACCTGACAGAAATGAACATGAGTACTGACGCAAGTACGAATAGTCTCAGTTCCAACTACTTCAATCATTCAAGGAGATACACTGACCTCTAATGCATTTGCACCAGAATTTCTGTTACCATGAGTAGGAGAGGAAATACGCCGGCCAACGTATACTTGTCCAAATCCTCCCTTTCCAAGCTTCCTCTCAAGCTTATACGTTGGTGAATTTCCGATTTGTACCTGGTCCAAGCACACAACCGCCCAAAATAAATATATGGTTATGATAACATGATGTAAAATCCTATAAACATGTGAAAAAGGAGACAGGTCAGCTATTCCATGCGTAATAAAATGATACAAAATTTCATCATCAGAACAGCCATTGCAACATTTCTGATCTTTTGTGAGCTAAACAGGTTTCAAGCAGTCAACTCTGAGTGCAGGTGACATGAGGCACCTTCATTCTTGCAACAAATCCTGTATAATGACTAATCCTGCTTTGATCTAATGGAAAGCTACCATTATCCTAAAGAATGCCTATACAGTAGCATCTACAATATGGCTCAACATAGTGCGCAATAAAATTAAGGCACTTTAGATTCTCCCGTTCCTAGGCAGATCTTTTATCTGCATGATGGTAGCTAATCCTAACAGACCGATGCTCAATCAAATCTCCGCTTGGAATTTAACACAAACACTCAGCATGTGAATTCAACAAATGTTAGGAATAAAACAGGAACAGAGAATACATGAAACAGTAACAACACTCAGCTAACCAATTGAATTTCGTATACATGGCAGAAATGAACATAATTAAGCAACCGACAAGATCTACGTTCAGTAAAAACACACACCAAACACCAGAAATGGTATATTCATGGCACACTAATTATAAGTGCCATCAAATGCTAGAGATTAACTAGATGGAGTCTAGAACTCAAGATGTTAGCTATCTCATCAGTTTTCTGCTTGAAATGCACAATAAGCTTCTGGTCAACATCACCCGTACTGATGCTATCCTAGATTTACACAATAAGCATTCTTCATTCACATTTAGTCAAAAGTTCTAATTTAGTTCCACACAATTCTCTACAAAATCAGTTCTGTGCAGCTGCTATTTGTAATCAATACATCTGCTATCCTCCCCTTCTCTTGTCACCAGTTGGATCAGAGTTAATTGAAAGTAAGCTAAGAATCCAGAACAACTAGTAGTTATTTTGCCACAAGCGTAAAACTCCACCATCCCATCCCGCGTGTACAGTTTGCATAGATCAATCAGTTCATCTACACCAGCGGCAGCGTCTATTCAATCAATAGAACCCTAAACCAAAAAAACAAAACGCCCCCTAAAAAAAAATCGACAGCCATATCTAGGTCACGCAGCGGGGGAGCCAAGGGGGGATAGATAATCCGCGATTACCGTCTCCGGGAGCGGCGCGGGGCTCCCGTCGTCGCCGGCGCCCCCCTTGTCGGACCCTTCCATCCCCTTCCGCTCCTCCTCCCGCTGCTTCCCCTCCGGCTGCCTCGCGTCCGCTGGGCCCGTCGGCGGCGGCGGCGGCTGCTGCTGCTTCCGCTTTCCACGGCCTCGGCGCGCTGGCATGCTTCAGCGGCGCACGCCCATCGGCTCGCCGGGGGATCGAGGCGATCGGCCGCGCTGGGGCTAGGGCTTGGCCTCCGCGCCGGCGGCGACGGGTGGGGGGTGAGCCGGCGGCGGTGACGACGACGAGACGGGAGGAGGGGGAGATTGCGAGGTAGGGCGCGTGGTGAAAAAAATCCTGGTACCACAGCCGTGTTGTGTAGTAAG
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| CDS seq | ATGCCAGCGCGCCGAGGCCGTGGAAAGCGGAAGCAGCAGCAGCCGCCGCCGCCGCCGACGGGCCCAGCGGACGCGAGGCAGCCGGAGGGGAAGCAGCGGGAGGAGGAGCGGAAGGGGATGGAAGGGTCCGACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGGGAGGATTTGGACAAGTATACGTTGGCCGGCGTATTTCCTCTCCTACTCATGGTAACAGAAATTCTGGTGCAAATGCATTAGAGGTTGCGCTAAAATTCGAACATCGAACCAGCAAAGGTTGCAGCTATGGAGCTCCCTATGAATGGCAAGTCTACAATACTCTTAGTGGAAATCATGGTGTCCCACGGGTACACTACAAAGGAAAGCAGGGCGGGTTTTACATCATGGTTATGGATATGTTGGGACCGAGCCTGTGGGATGTTTGGAATAACAATTCCCACTCGATGTCTGTTGAGATGGTTGCTTGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGATACCCCTGAAGGGAAGAAACTTTTTCTTGTTGATCTTGGACTAGCTACTAAATGGAAAGATGCTGGTACAGGAAAGCATGTTGAATATGACCAGAGACCTGATATCTTTAGGGGTACTGTTCGTTATGCTAGTGTGCATGCCCACTTGGGAAGAACTGGATGCAGGAGAGATGACCTTGAATCCCTTGCATACACACTTATTTTCCTTCTCCGTGGCCGCCTGCCTTGGCAAGGATTCCAGGGAGAGAATAAAGGTTTTCTTGTTTGCAAGAAAAAGATGGCAACCTCTCCAGAATCTTTATGTGGCATTGGTCCACCACCATTTCGTCAATTTGTTGAGTATGTTGTGAACTTGAAGTTCGACGAAGAGCCAAACTATGCAAAGTGCATTGCTCTTTTTGATGGCATTGTTGGTCCAAATCCAGATGGAAGACCATTAAACACCGATGGTGCCCAGAAGCTTGTATATCAGGTTGGTCAGAAGAGAGGCCGCCTCACAGCGGCTGAAGATGAGGAGCAACCTAAGAAAAAGATTAGAATGGGAATGCCAGCGACCCAGTGGATTAGTGTGTACAATGCCCGTCGGCCAATGAAACAGAGATACCACTACAATGTAGCAGATGATAGATTAGCACCACATATTCAAAAAGGAAATGAAGATGGTTTGTTTATAAGTTCAGTTTCATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAGAAATTACTATATTACTTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGGCTTTGATCTTGAGCATACCTAGAAGAAAGCCTAACGATGAAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCAGTGTCGTGA
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| Protein seq | MPARRGRGKRKQQQPPPPPTGPADARQPEGKQREEERKGMEGSDKGGAGDDGSPAPLPETVQIGNSPTYKLERKLGKGGFGQVYVGRRISSPTHGNRNSGANALEVALKFEHRTSKGCSYGAPYEWQVYNTLSGNHGVPRVHYKGKQGGFYIMVMDMLGPSLWDVWNNNSHSMSVEMVACIGIEAISILEKMHAKGYVHGDVKPENFLLGPPDTPEGKKLFLVDLGLATKWKDAGTGKHVEYDQRPDIFRGTVRYASVHAHLGRTGCRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKEKWAKNLYLGSICYGRSVS |
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| Function | Casein kinase 1-like protein HD16 [UniProtKB/Swiss-Prot:Q852L0] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0198200 | OsNip_01t0198200-03 | Chr01 | 5329063 | 5332585 | - | RAP2018-11-26 | ||
| CDS seq | GGAGAGAATAAAGGTTTTCTTGTTTGCAAGAAAAAGATGGCAACCTCTCCAGAATCTTTATGTGGCATTGGTCCACCACCATTTCGTCAATTTGTTGAGTATGTTGTGAACTTGAAGTTCGACGAAGAGCCAAACTATGCAAAGTGCATTGCTCTTTTTGATGGCATTGTTGGTCCAAATCCAGATGGAAGACCATTAAACACCGATGGTGCCCAGAAGCTTGTATATCAGGTTGGTCAGAAGAGAGGCCGCCTCACAGCGGCTGAAGATGAGGAGCAACCTAAGAAAAAGATTAGAATGGGAATGCCAGCGACCCAGTGGATTAGTGTGTACAATGCCCGTCGGCCAATGAAACAGAGATACCACTACAATGTAGCAGATGATAGATTAGCACCACATATTCAAAAAGGAAATGAAGATGGTTTGTTTATAAGTTCAGTTTCATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAGAAATTACTATATTACTTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGGCTTTGATCTTGAGCATACCTAGAAGAAAGCCTAACGATGAAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCAGTGTCGTGA
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| Protein seq | GENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKEKWAKNLYLGSICYGRSVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0198200 | OsNip_01t0198200-01 | Chr01 | 5329075 | 5335518 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCAGCGCGCCGAGGCCGTGGAAAGCGGAAGCAGCAGCAGCCGCCGCCGCCGCCGACGGGCCCAGCGGACGCGAGGCAGCCGGAGGGGAAGCAGCGGGAGGAGGAGCGGAAGGGGATGGAAGGGTCCGACAAGGGGGGCGCCGGCGACGACGGGAGCCCCGCGCCGCTCCCGGAGACGGTACAAATCGGAAATTCACCAACGTATAAGCTTGAGAGGAAGCTTGGAAAGGGAGGATTTGGACAAGTATACGTTGGCCGGCGTATTTCCTCTCCTACTCATGGTAACAGAAATTCTGGTGCAAATGCATTAGAGGTTGCGCTAAAATTCGAACATCGAACCAGCAAAGGTTGCAGCTATGGAGCTCCCTATGAATGGCAAGTCTACAATACTCTTAGTGGAAATCATGGTGTCCCACGGGTACACTACAAAGGAAAGCAGGGCGGGTTTTACATCATGGTTATGGATATGTTGGGACCGAGCCTGTGGGATGTTTGGAATAACAATTCCCACTCGATGTCTGTTGAGATGGTTGCTTGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGATACCCCTGAAGGGAAGAAACTTTTTCTTGTTGATCTTGGACTAGCTACTAAATGGAAAGATGCTGGTACAGGAAAGCATGTTGAATATGACCAGAGACCTGATATCTTTAGGGGTACTGTTCGTTATGCTAGTGTGCATGCCCACTTGGGAAGAACTGGATGCAGGAGAGATGACCTTGAATCCCTTGCATACACACTTATTTTCCTTCTCCGTGGCCGCCTGCCTTGGCAAGGATTCCAGGGAGAGAATAAAGGTTTTCTTGTTTGCAAGAAAAAGATGGCAACCTCTCCAGAATCTTTATGTGGCATTGGTCCACCACCATTTCGTCAATTTGTTGAGTATGTTGTGAACTTGAAGTTCGACGAAGAGCCAAACTATGCAAAGTGCATTGCTCTTTTTGATGGCATTGTTGGTCCAAATCCAGATGGAAGACCATTAAACACCGATGGTGCCCAGAAGCTTGTATATCAGGTTGGTCAGAAGAGAGGCCGCCTCACAGCGGCTGAAGATGAGGAGCAACCTAAGAAAAAGATTAGAATGGGAATGCCAGCGACCCAGTGGATTAGTGTGTACAATGCCCGTCGGCCAATGAAACAGAGATACCACTACAATGTAGCAGATGATAGATTAGCACCACATATTCAAAAAGGAAATGAAGATGGTTTGTTTATAAGTTCAGTTTCATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAGAAATTACTATATTACTTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGGCTTTGATCTTGAGCATACCTAGAAGAAAGCCTAACGATGAAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCAGTGTCGTGA
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| Protein seq | MPARRGRGKRKQQQPPPPPTGPADARQPEGKQREEERKGMEGSDKGGAGDDGSPAPLPETVQIGNSPTYKLERKLGKGGFGQVYVGRRISSPTHGNRNSGANALEVALKFEHRTSKGCSYGAPYEWQVYNTLSGNHGVPRVHYKGKQGGFYIMVMDMLGPSLWDVWNNNSHSMSVEMVACIGIEAISILEKMHAKGYVHGDVKPENFLLGPPDTPEGKKLFLVDLGLATKWKDAGTGKHVEYDQRPDIFRGTVRYASVHAHLGRTGCRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKEKWAKNLYLGSICYGRSVS
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0198200 | OsNip_01t0198200-02 | Chr01 | 5329096 | 5333540 | - | RAP2018-11-26 | ||
| CDS seq | CATGGTGTCCCACGGGTACACTACAAAGGAAAGCAGGGCGGGTTTTACATCATGGTTATGGATATGTTGGGACCGAGCCTGTGGGATGTTTGGAATAACAATTCCCACTCGATGTCTGTTGAGATGGTTGCTTGTATAGGTATAGAGGCCATCTCCATACTAGAGAAGATGCATGCTAAAGGGTACGTCCATGGTGATGTGAAACCTGAGAACTTTTTGCTTGGTCCTCCAGATACCCCTGAAGGGAAGAAACTTTTTCTTGTTGATCTTGGACTAGCTACTAAATGGAAAGATGCTGGTACAGGAAAGCATGTTGAATATGACCAGAGACCTGATATCTTTAGGGGTACTGTTCGTTATGCTAGTGTGCATGCCCACTTGGGAAGAACTGGATGCAGGAGAGATGACCTTGAATCCCTTGCATACACACTTATTTTCCTTCTCCGTGGCCGCCTGCCTTGGCAAGGATTCCAGGGAGAGAATAAAGGTTTTCTTGTTTGCAAGAAAAAGATGGCAACCTCTCCAGAATCTTTATGTGGCATTGGTCCACCACCATTTCGTCAATTTGTTGAGTATGTTGTGAACTTGAAGTTCGACGAAGAGCCAAACTATGCAAAGTGCATTGCTCTTTTTGATGGCATTGTTGGTCCAAATCCAGATGGAAGACCATTAAACACCGATGGTGCCCAGAAGCTTGTATATCAGGTTGGTCAGAAGAGAGGCCGCCTCACAGCGGCTGAAGATGAGGAGCAACCTAAGAAAAAGATTAGAATGGGAATGCCAGCGACCCAGTGGATTAGTGTGTACAATGCCCGTCGGCCAATGAAACAGAGATACCACTACAATGTAGCAGATGATAGATTAGCACCACATATTCAAAAAGGAAATGAAGATGGTTTGTTTATAAGTTCAGTTTCATCCTGTTCAGATCTGTGGGCTTTAATTATGGATGCTGGCACTGGTTTTACCGCCCAAGTACATGAACTCTCCCATTACTTTCTTCACAAGGAATGGATAATGGAGCAGTGGGAGAGAAATTACTATATTACTTCTTTGGCTGGTTCAAATAATGGAAGCTCGGTGGTGATCATGTCAACAGGAACGCCATATGCACAGCAATCCTACAAAGTAAGTGATTCATTTCCCTTCAAATGGATAAACAAAAAGTGGAAGGAGGGGTTCTATGTCACTGCCTTGGCCACAGCAGGAAGCCGATGGGCTGTGGTTATGTCCCGGAACGCTGGTTTCACACATCAGGTAGTAGAACTTGATTTCTTATATCCGAGTGAAGGAATCCATCAACGCTGGGATAGTGGTTATCGCATAACTGCAACAGCAGCCACATGTGACCAGGTGGCTTTGATCTTGAGCATACCTAGAAGAAAGCCTAACGATGAAACACAGGAGACACTGAGAACATCTGCTTTTCCTGGCCAGCATGTAAAGGAAAAATGGGCAAAAAATCTTTATTTAGGCTCCATATGCTATGGAAGATCAGTGTCGTGA
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| Protein seq | HGVPRVHYKGKQGGFYIMVMDMLGPSLWDVWNNNSHSMSVEMVACIGIEAISILEKMHAKGYVHGDVKPENFLLGPPDTPEGKKLFLVDLGLATKWKDAGTGKHVEYDQRPDIFRGTVRYASVHAHLGRTGCRRDDLESLAYTLIFLLRGRLPWQGFQGENKGFLVCKKKMATSPESLCGIGPPPFRQFVEYVVNLKFDEEPNYAKCIALFDGIVGPNPDGRPLNTDGAQKLVYQVGQKRGRLTAAEDEEQPKKKIRMGMPATQWISVYNARRPMKQRYHYNVADDRLAPHIQKGNEDGLFISSVSSCSDLWALIMDAGTGFTAQVHELSHYFLHKEWIMEQWERNYYITSLAGSNNGSSVVIMSTGTPYAQQSYKVSDSFPFKWINKKWKEGFYVTALATAGSRWAVVMSRNAGFTHQVVELDFLYPSEGIHQRWDSGYRITATAATCDQVALILSIPRRKPNDETQETLRTSAFPGQHVKEKWAKNLYLGSICYGRSVS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 9.124066 | 12.485984 | 16.101595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0200500 | RBH | 2.591762 | 2.096377 | 6.352777 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10150 | RBH | 4.273487 | 5.968085 | 2.991352 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0198200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007250 | RBH | 3.171294 | 25.234888 | 15.215384 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006900 | RBH | 2.011171 | 9.424856 | 8.310195 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007210 | RBH | 7.247466 | 26.056730 | 34.250443 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006750 | RBH | 1.357122 | 0.740996 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006880 | RBH | 30.603708 | 32.838657 | 51.645847 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0087700 | RBH | 25.644721 | 54.993324 | 104.647156 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006850 | RBH | 1.573072 | 1.689352 | 4.631682 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0088700 | RBH | 22.7839715 | 61.1445655 | 55.815203 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006660 | RBH | 1.084440 | 0.900186 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006840 | RBH | 2.460806 | 17.571388 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006870 | RBH | 23.195057 | 36.310539 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006870 | RBH | 2.287269 | 1.088037 | 2.064136 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006790 | RBH | 1.623601 | 14.655108 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006870 | RBH | 2.423042 | 9.986674 | 9.497956 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006720 | RBH | 6.022774 | 39.883102 | 21.503222 |
