Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0197450 | OGI:01017550 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:5261189-5263102 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | TCATCTTTGTTCATCTTCCATCTCTGCATATAGATCATCGAGCATTCCGAAGACATCCTCAGCTCCGGTGAGATTCGGCGGCGCGCTCCCGGCGGCGAAGGCGACCACCTTGTTGTCCACTTCAATCCAGCTCTGCCCCGGATTCTTCCTCAATCCGGCCTCCTTCGTCATCACCCTCACCTTCTTGGACTCGTCCCACATGCCACACATGGCGTACAGGTTGGTGATCAGCATGTGGTTGCCGGTGCTCTGGTCCTCGGATTGCAGGACATTGGCAATGGTGGCCTCGGCCATGGCTGCATCACCATGAATCCTGCAGGAATTCAGCAATGCTCCCCACACGCACAGGTCAGGTCTCACCGGCATCGTCTCGACGAGCTCCGACGCGTCCCGGAGCAAGCCGGCGCGGCCGAGGAGGTAGACCATGCATGTGTAGTGCTCCATGGATGGGGAGATCTTGTGCGCTCTCACCATGCGATCGAACAGGCGGCGGCCCTCCGTGACACGCCCGGCGTGGCCGCACGCCGACAGGACGGCGACGAAGGTGACGCCGTCGGGCTCAACCGTAGCTCCGGCCATGTCGGTGAACAGAGCGAGGGCTTCGTCGCACAGGCCGTGCATGCCGTAGCCGGCCAGCATCGAGTTCCATGAGATCAGGTCCCTCGTCTTCATTCCATCGAACACCTTCCGTGCGCCGGAGACCTTCCCGCACTTCGCGTACATGTTGATGAGCCCATTCTCGACCAGCGAGTGCCTATCTAGCTCGGCTTTCATGGCGTGGCCATGGAGCTCTCGACCCAGCCGTAACGCCAGTAGGTCGACGCAAGCGGAGAGGACGGTCGCCATGGTCACCACGTTCGGCGAGAGCCATTGCTGCTGCATTCGCCGGAACAGCTCCAGTGCGCGGTCAGTGTCGCCGGACGACGCGAACCCGCCGATGACCGCGCTCCAGCTGACCACATTGGGCGCGACCGTGCCGCCGATCTGCTCCATCTGGGCGAGCACGTCCAACGCCTTGTCGCACAGCCGAGCCGCGGCGTAGCTGGTGATCAGGGTGTTCCATGTCACGGTGTTCTTCGCCGTCGCGTCCCTGAAAGCTTTCTTGGCGTCGTCCATCTCTCCGAGCTTGCCGTACATGCAGATCAACGAGTTGGTGACGAACAGGTAGCCATGCATGAGGCCCTTCACGACGCCGCAGCCGTGTATCGCCTTCCCTTTGGCCAATGCAAGGTCGCCGGCGTAAGGGCACGCCGAGAGCGCCACGGCCATGGACTCGGCGTTCCCCTCGCAGCCGCTCCTTTGCATTTCACCGAACAGCTGAAGGACATCCGCGTGCTTCCCGCTCCGCGCGTGCGCCGAGAGCAGCGCCGTCCACGTCACGGCGTCGGGACGCGCCCCTGCGGCGGCCATGCGCGCGAACGCGTCCCTCGCCGCGTCGGGGTCGCAGCCGCTGGAGTAGGCGGAGATGAGCGCGTTCCAGTGGAAGGTCGTCCTCCCCGGCGGCATTGCGTCGAACACGCGGCGTGCGTCGGCGGCGCGGCCGAGCCTGGAGTAGGCGGCGAGGATCTGGCCGGCGACGTCGTGCTGCGCGTGGAGGCCGAGGTGAAGGGCGTGGGCGTGGACGGCGGAGGCGACGCGCGGGGAGGCGGCGGCGCGGAGGGCGAGGGGGAGCGTGTAGGAGTTCGGCAGCGCCGGGGAGAGCGCGCGCATGCGGCGGTAGAGCGCGAGGGCGAGGTCCCCGCGGGAACGGCCGAGGTGGGCGCGGAGGAGGCGATTCCATGGGACGGCGCTGGTGGTCGGAGGGTGGTGATGGTGGATCGGTTGGTCGCCGGCGGCGGTGGAGAGATGGCGCGCGCCGCGAGGCCGATGGCTGGGACGAGAGGTAGAGCCGCGAGCGCGAAGGAGACAGCGCAT
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| CDS seq | ATGCGCTGTCTCCTTCGCGCTCGCGGCTCTACCTCTCGTCCCAGCCATCGGCCTCGCGGCGCGCGCCATCTCTCCACCGCCGCCGGCGACCAACCGATCCACCATCACCACCCTCCGACCACCAGCGCCGTCCCATGGAATCGCCTCCTCCGCGCCCACCTCGGCCGTTCCCGCGGGGACCTCGCCCTCGCGCTCTACCGCCGCATGCGCGCGCTCTCCCCGGCGCTGCCGAACTCCTACACGCTCCCCCTCGCCCTCCGCGCCGCCGCCTCCCCGCGCGTCGCCTCCGCCGTCCACGCCCACGCCCTTCACCTCGGCCTCCACGCGCAGCACGACGTCGCCGGCCAGATCCTCGCCGCCTACTCCAGGCTCGGCCGCGCCGCCGACGCACGCCGCGTGTTCGACGCAATGCCGCCGGGGAGGACGACCTTCCACTGGAACGCGCTCATCTCCGCCTACTCCAGCGGCTGCGACCCCGACGCGGCGAGGGACGCGTTCGCGCGCATGGCCGCCGCAGGGGCGCGTCCCGACGCCGTGACGTGGACGGCGCTGCTCTCGGCGCACGCGCGGAGCGGGAAGCACGCGGATGTCCTTCAGCTGTTCGGTGAAATGCAAAGGAGCGGCTGCGAGGGGAACGCCGAGTCCATGGCCGTGGCGCTCTCGGCGTGCCCTTACGCCGGCGACCTTGCATTGGCCAAAGGGAAGGCGATACACGGCTGCGGCGTCGTGAAGGGCCTCATGCATGGCTACCTGTTCGTCACCAACTCGTTGATCTGCATGTACGGCAAGCTCGGAGAGATGGACGACGCCAAGAAAGCTTTCAGGGACGCGACGGCGAAGAACACCGTGACATGGAACACCCTGATCACCAGCTACGCCGCGGCTCGGCTGTGCGACAAGGCGTTGGACGTGCTCGCCCAGATGGAGCAGATCGGCGGCACGGTCGCGCCCAATGTGGTCAGCTGGAGCGCGGTCATCGGCGGGTTCGCGTCGTCCGGCGACACTGACCGCGCACTGGAGCTGTTCCGGCGAATGCAGCAGCAATGGCTCTCGCCGAACGTGGTGACCATGGCGACCGTCCTCTCCGCTTGCGTCGACCTACTGGCGTTACGGCTGGGTCGAGAGCTCCATGGCCACGCCATGAAAGCCGAGCTAGATAGGCACTCGCTGGTCGAGAATGGGCTCATCAACATGTACGCGAAGTGCGGGAAGGTCTCCGGCGCACGGAAGGTGTTCGATGGAATGAAGACGAGGGACCTGATCTCATGGAACTCGATGCTGGCCGGCTACGGCATGCACGGCCTGTGCGACGAAGCCCTCGCTCTGTTCACCGACATGGCCGGAGCTACGGTTGAGCCCGACGGCGTCACCTTCGTCGCCGTCCTGTCGGCGTGCGGCCACGCCGGGCGTGTCACGGAGGGCCGCCGCCTGTTCGATCGCATGGTGAGAGCGCACAAGATCTCCCCATCCATGGAGCACTACACATGCATGGTCTACCTCCTCGGCCGCGCCGGCTTGCTCCGGGACGCGTCGGAGCTCGTCGAGACGATGCCGGTGAGACCTGACCTGTGCGTGTGGGGAGCATTGCTGAATTCCTGCAGGATTCATGGTGATGCAGCCATGGCCGAGGCCACCATTGCCAATGTCCTGCAATCCGAGGACCAGAGCACCGGCAACCACATGCTGATCACCAACCTGTACGCCATGTGTGGCATGTGGGACGAGTCCAAGAAGGTGAGGGTGATGACGAAGGAGGCCGGATTGAGGAAGAATCCGGGGCAGAGCTGGATTGAAGTGGACAACAAGGTGGTCGCCTTCGCCGCCGGGAGCGCGCCGCCGAATCTCACCGGAGCTGAGGATGTCTTCGGAATGCTCGATGATCTATATGCAGAGATGGAAGATGAACAAAGATGA
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| Protein seq | MRCLLRARGSTSRPSHRPRGARHLSTAAGDQPIHHHHPPTTSAVPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRAAASPRVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAPPNLTGAEDVFGMLDDLYAEMEDEQR |
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| Function | Putative pentatricopeptide repeat-containing protein At1g17630 [UniProtKB/Swiss-Prot:Q9LNP2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0197450 | OsNip_01t0197450-00 | Chr01 | 5261189 | 5263102 | - | RAP2018-11-26 | ||
| CDS seq | ATGCGCTGTCTCCTTCGCGCTCGCGGCTCTACCTCTCGTCCCAGCCATCGGCCTCGCGGCGCGCGCCATCTCTCCACCGCCGCCGGCGACCAACCGATCCACCATCACCACCCTCCGACCACCAGCGCCGTCCCATGGAATCGCCTCCTCCGCGCCCACCTCGGCCGTTCCCGCGGGGACCTCGCCCTCGCGCTCTACCGCCGCATGCGCGCGCTCTCCCCGGCGCTGCCGAACTCCTACACGCTCCCCCTCGCCCTCCGCGCCGCCGCCTCCCCGCGCGTCGCCTCCGCCGTCCACGCCCACGCCCTTCACCTCGGCCTCCACGCGCAGCACGACGTCGCCGGCCAGATCCTCGCCGCCTACTCCAGGCTCGGCCGCGCCGCCGACGCACGCCGCGTGTTCGACGCAATGCCGCCGGGGAGGACGACCTTCCACTGGAACGCGCTCATCTCCGCCTACTCCAGCGGCTGCGACCCCGACGCGGCGAGGGACGCGTTCGCGCGCATGGCCGCCGCAGGGGCGCGTCCCGACGCCGTGACGTGGACGGCGCTGCTCTCGGCGCACGCGCGGAGCGGGAAGCACGCGGATGTCCTTCAGCTGTTCGGTGAAATGCAAAGGAGCGGCTGCGAGGGGAACGCCGAGTCCATGGCCGTGGCGCTCTCGGCGTGCCCTTACGCCGGCGACCTTGCATTGGCCAAAGGGAAGGCGATACACGGCTGCGGCGTCGTGAAGGGCCTCATGCATGGCTACCTGTTCGTCACCAACTCGTTGATCTGCATGTACGGCAAGCTCGGAGAGATGGACGACGCCAAGAAAGCTTTCAGGGACGCGACGGCGAAGAACACCGTGACATGGAACACCCTGATCACCAGCTACGCCGCGGCTCGGCTGTGCGACAAGGCGTTGGACGTGCTCGCCCAGATGGAGCAGATCGGCGGCACGGTCGCGCCCAATGTGGTCAGCTGGAGCGCGGTCATCGGCGGGTTCGCGTCGTCCGGCGACACTGACCGCGCACTGGAGCTGTTCCGGCGAATGCAGCAGCAATGGCTCTCGCCGAACGTGGTGACCATGGCGACCGTCCTCTCCGCTTGCGTCGACCTACTGGCGTTACGGCTGGGTCGAGAGCTCCATGGCCACGCCATGAAAGCCGAGCTAGATAGGCACTCGCTGGTCGAGAATGGGCTCATCAACATGTACGCGAAGTGCGGGAAGGTCTCCGGCGCACGGAAGGTGTTCGATGGAATGAAGACGAGGGACCTGATCTCATGGAACTCGATGCTGGCCGGCTACGGCATGCACGGCCTGTGCGACGAAGCCCTCGCTCTGTTCACCGACATGGCCGGAGCTACGGTTGAGCCCGACGGCGTCACCTTCGTCGCCGTCCTGTCGGCGTGCGGCCACGCCGGGCGTGTCACGGAGGGCCGCCGCCTGTTCGATCGCATGGTGAGAGCGCACAAGATCTCCCCATCCATGGAGCACTACACATGCATGGTCTACCTCCTCGGCCGCGCCGGCTTGCTCCGGGACGCGTCGGAGCTCGTCGAGACGATGCCGGTGAGACCTGACCTGTGCGTGTGGGGAGCATTGCTGAATTCCTGCAGGATTCATGGTGATGCAGCCATGGCCGAGGCCACCATTGCCAATGTCCTGCAATCCGAGGACCAGAGCACCGGCAACCACATGCTGATCACCAACCTGTACGCCATGTGTGGCATGTGGGACGAGTCCAAGAAGGTGAGGGTGATGACGAAGGAGGCCGGATTGAGGAAGAATCCGGGGCAGAGCTGGATTGAAGTGGACAACAAGGTGGTCGCCTTCGCCGCCGGGAGCGCGCCGCCGAATCTCACCGGAGCTGAGGATGTCTTCGGAATGCTCGATGATCTATATGCAGAGATGGAAGATGAACAAAGATGA
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| Protein seq | MRCLLRARGSTSRPSHRPRGARHLSTAAGDQPIHHHHPPTTSAVPWNRLLRAHLGRSRGDLALALYRRMRALSPALPNSYTLPLALRAAASPRVASAVHAHALHLGLHAQHDVAGQILAAYSRLGRAADARRVFDAMPPGRTTFHWNALISAYSSGCDPDAARDAFARMAAAGARPDAVTWTALLSAHARSGKHADVLQLFGEMQRSGCEGNAESMAVALSACPYAGDLALAKGKAIHGCGVVKGLMHGYLFVTNSLICMYGKLGEMDDAKKAFRDATAKNTVTWNTLITSYAAARLCDKALDVLAQMEQIGGTVAPNVVSWSAVIGGFASSGDTDRALELFRRMQQQWLSPNVVTMATVLSACVDLLALRLGRELHGHAMKAELDRHSLVENGLINMYAKCGKVSGARKVFDGMKTRDLISWNSMLAGYGMHGLCDEALALFTDMAGATVEPDGVTFVAVLSACGHAGRVTEGRRLFDRMVRAHKISPSMEHYTCMVYLLGRAGLLRDASELVETMPVRPDLCVWGALLNSCRIHGDAAMAEATIANVLQSEDQSTGNHMLITNLYAMCGMWDESKKVRVMTKEAGLRKNPGQSWIEVDNKVVAFAAGSAPPNLTGAEDVFGMLDDLYAEMEDEQR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.119109 | 0.261625 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0207200 | SBH | 0.315686 | 0.344870 | 0.410962 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g10090 | RBH | 0.090157 | 0.196957 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0197450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0007200 | SBH | 0.000000 | 0.000000 | 0.552042 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0006850 | SBH | 0.116457 | 0.0 | 2.400092 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0007160 | SBH | 0.000000 | 1.597690 | 0.516892 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0006700 | SBH | 0.000000 | 0.020815 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0006830 | SBH | 0.000000 | 0.000000 | 2.331209 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0087300 | RBH | 0.521045 | 1.030346 | 2.602306 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0006800 | SBH | 0.071849 | 0.057759 | 0.137548 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0088400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0006610 | SBH | 0.081233 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0006790 | SBH | 0.193650 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0006830 | SBH | 1.125751 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0006820 | SBH | 0.099127 | 0.085966 | 0.152648 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0006750 | SBH | 0.036884 | 0.499338 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G006820 | SBH | 0.000000 | 0.000000 | 1.161064 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0006680 | RBH | 0.784220 | 0.000000 | 1.998016 |
