Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0159300 | OGI:01011070 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:3100294-3105226 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | AATGTAAACCACTTCATATGATTAAATGAATTAAAAATTGGCATTTTAATAGTTAATACATATAAAAGGATATCAGCTATGGTAACACACAAAATAATTTAATGTTAGCAAACTTACTTATTTACATGGCTGAGGCGCACAAAGAATGAAACAACTTAATTGGGTCTAAATACTAACAAATTTGAGGACCATATTGTTGTTTGTCCTCGCGTGTCCTATGCAGCAGCCGACTTGCAAATTGGGCATGAGTTCTTCTCCTTCAACCACTTCTTGACGCAGTCGGTGTGGAAGTCGTGATTGCATTTCAGTATTCCCAGCAAACTGTTGTCTTTGTATTCCTCCTGCACAAAAGGCCAACAACCCATCGATAATCAGTCAGAAATACCTAAAAGTTTTTTCAAGACAGGGTAACGAATTGTTCGACATGAAACTGGAACTAATAAACCAAGCAGTTAAAATTGTACCAGACAAATTGCACATTTCCCATCATCTTGATCATTTTGCTGTTCATCAGAACTGCAATAGATCACTTCTCTCACACAACCTGAGATTTTCTCGTCCACCAAGCCTGTGCAGACATTACCAATAGATTCTCCCAAAGCCAGCAGGTCCTGTTGACAGCAAATGATAGAGTTAAGAAAATAGATTTTCAAGTTTCCAGGGTGGGAGGCATGTAAGCAAAAACCAGCTCTTCTACCTCATAACTCATATTGTCAATGTCCAGTCTCATGGCCCTGTGGGGGTCTTGTGCTTCTCTTGATTCGCGGAGAGCAAATTGTTGCATCATTATCAATTGCTTCAGAAACAACATCTTGTTTCAGTTCATAATTAAAATTCAAATATATATTGATTACAGTAGGAATGGAGAAGAATCTACCTGTGCATCAATCATCAAAGGCTGAATACCATAGTATGAGCTTCTCGCCCTTCTGTTCCTTCCGCTGTTAGCATGCCCTATGAGTACATTCCTTGCATGTCTAGAAGATGCAACAGCTCTGACAGGTAATGGCTGACTGGCCCTCATGGGTGTTGAGGTAGTTGCAGAGGTAGCAGGTTGGTAGCTCGGAATGATCACCTCATGGGGAATCGCTGTAGAGCTAGAGGATGCTACAGAAGGCAGATGAATGTAGCTAGGAACAGTGTCACCATGAACATGCCTAGGTGCAAAGACACCACTGGCAAATATTGCACTGCTTGAAGAGCCTTGTAAAGTTGGGACAGGAACAGATGAGTTGCTGCTTCCCATAGTGTAAGGCATTTCTCCAGAGTGCATTCCAGAGGCACCTACATAATCATTTAAATACATGTGCTGTGAGAGCAAACAACGATAAACTTAAAAAATCCAACTTGCTATATAAATACTATATATCAATAAGGAAATTAGGGACTAATAATCCACATTCACGTAAAAAGCAGCTGTAAGTATTATACTCTATGACTAATATACCATGTCATAAAACGCAACCACAACAAAACTAAGATGCCTTGGGTTCTGTTCCACCATTTACTATATGAACCAAATAATTCATAAGATGTAAATTGTTGAAGCAACACAGTGATGTCTCTTCATATCTTGTCATAAGAAATAAAACACTGGCAAAGAACACTTTACAAAAATAAGGGTCGCACATGTAGCAAATTTAACTAAGCAGCAAACTACTAACCTGAAGGCATAGTTCTCATTCGCGTAGAAAAGGATGGTCCATTCCTTTTCATTGATGTACTTTGGGAAACATTCGAAGTAGAATGGACTGGTCTAGGTTCCAATGAAATATTATTAAAATTATGACGTGCCCTCACATTTCTCTGACTTCCTTCTTGATTTACCAAGCTCTGGTCATTCCAATTAATTGGGCCAACACTTGGAGGCATTTGACGATGCAAGGACTCAGAAAATGGAGCTGGCTGTGGATAATTAGAGAACTGGGTACTTGATGAGCTACCGGCACAATAACCATCACCATTGATGCTATACTCTGGATAAATGACAGGATTTTTTCGTTTCACTGCAGCAGTTCTGTTGTCGATTTGGGAACTCCCTCGAGCAAATTCTCCCTCAGATCTATGTGGATAAGTTATAACAGGTTCAGTTTGAGGATTGTAGGATACATGGCCACCAGAGCTTCCAGCAGGATAGTGAACATAGGAGTTATGTAAGGTTCCTGTGTTTTTAACTCTATGACCTGAATATTGTGCCACTCGACTTGAAGATGGAAGATCATTCGATCTAATTGCCACATTCCCATGGTATGAAGGGCCAATTTTAAGGGCTGCATCATTTCCAGCATGCACAAATAACTTCTGACCTGAGATTAAAACAAAATAGGACACAATTTTAATCACAATTCAGACATGTACAATACAATAGATAATAATGAAGCCAAGCTACCTAAAGGCAGAGGTTGGTTGAGTTGCTCATTATTGGGTTGAACCATCTCTGGCAGTAGGGAATGGTTTCCATGGTGTCTAGCCATAAAACAGTCAGTCCAGTATGCCTGTCCTTAACCTGGTAATCACAAACCGAACATCGTTAATTAAGTGTAGCACAACATTGAAGATTGTAATGAAATGATGCATTAGCTCGTGGAACATGCTGCGCTGCTGATTGTTACAATTCAAATACCACAACATTTAGTCAATTATTCACTGGCGTAAGGAGCATGAAGCAAAAATACTGGAGTTTGAATAGGCACAATGATATACAACAAAATGTGCTAGAACAACATAGAAGTACATGAATACAGAACTTTGTCAATAAGTTTGTTTGAAAAGCCAATGGTGCCTATCACATGTAACGATCTCCATGTATGTATTTGACATGTATATTTGATAAAATCCAGATGGTGTGGCAACTAAATATGCCATTATGCACCCTGTTCACTAATTAGTTCCCAACACTAGGAGTTAAAAAAGTTATTGTGGTTCAAGAAAAGTCAGAAACAAAACTAATTTAATGTCTTCTCCCTTATTTTTCCCTAAAGATATATTTTTCTTAACATTTAGCACGACAGGCAGTAAAAACATGTAGGAGGCAGATAGACACAAAAATAAATGCTCATTTCTACCTTGTTCTAAATGTACAATATCATTTGTCAGTAACATGTAAGTCTAATACAATATTGCAGCACTTACCTTACATAATTTTTTATAAGTATTTAATTTCCAGAAAGATTAAATGGGAGGATGGAAGAGCGGTATTCAAAACACCAAAAGGTTTTATTGTGAACGCATGAATAACAAACCGAAAGATTAAATGGGGACTGATAACCACATCTTATATCATATTGTTCCTTCCTATGCTACAGGTCTACAGATTTTTTTGCCAACATTTGTAGTACAAAAATTTATAAACGAAGCAGACATCATTGCCAAAAAAATATCATGGAAGCAGATTTTATACATAACAAGGAATAATGGAGATGCATCGGAGTATAAATAATGTGAAGCCAAGTGGTATGAGCTTTGAAGAGCAGCAGAATTTCATGAATGCAGGTGCAAATCTCATCTTTTAACTGGATGAAGATATGTTCATGAAATAGATGCCATGGATAATTGCATATGGCATTTCTAGATCTTTTGGCAAAAGCATTTGCACCTTATCTTTCCGGACAAAGCGACCACATCTCTAAATCAGCTACATTTGTTTCAAAGAATAACTAGCATCCTAGATATGCAAATTGGAGACAGACTAAAGATTTCCTACATTACTAAGAATCTTTTTTCCCCTAATGCTAGACTAACATCAGGATTCAACCAGTCTGGTTTGAACTGTTTGTACTTAGACTTTTAAAGATTTCTCCTAACGATAAAATCAATCACCCAAAAAAAAATCCAGGAGTGGGTACTAATGCTCATCCACTAAATCAACACTTCAGACAAAACCAATGAATATATTTGATGGCATAAATTTTCTCTATAGTAAAGCAAAAAATAAAATCTGCACCACCACCAACCAACTAGAACGGAAGCATAAATCATCCATCTAGATTTCACACTAAAAAGGCTCTCCTATGCACATTATAAATCATCCATCTAGATTTCACACTAAAAAGGCTCTCCTATGCACATTACAAATGTAAATTGTAAGGCTCTTCTATTTCCCCATATTACAAGTTAATCAAATCTACCACATATTCCTCCTCCCTCATATATCATACAGAACAGTAATTGGTAAACCGGCAGGCAATAATATACAGCCTAATGTCTAGAAAAAATATATGAAAAATAAAAAAATGTTAATCTATATTCTCACTATTCATTATTAAATTATGACTGAATCCACCTACTTGATTTTCGTCTTCAGAAATGTTGGATAATTATTATAAATTTCCAACCATATGTACTTTGGCTGATGCAGAATCGATGAGGACTCGCCACATCATGATAGTACAAACTACAAAGTCCTAACCAAATCCACCCTACTAAAATCAATCCTACCACGCCAAACTCCAAAATCGATCAACAACCACGTATCAACACCATAACAGAGCCGAAAGTATCTAAATCGCAACCGCTGATTTTTTTTTCTACATAACAAAGCCGAGCCGCCGAAAGCATCAACAACCACAACCACAACCACACGCACCTGATTTTCCCACACCAAAAAAATCTCACCCAACAACAAGCAGCCGATCCTAAGATACCGTGGTCAAAAACTCAAAATCGCAGCGGATCGGAGGGGCGTACCTGCTCACAAGTCGTCGTTCGCTCGCTCGATCGATCGATCGATCCACCGATCCAAACCCCACGCGACCGAATAAATTTCCAAGGGAGTAGATAGATAGAGGGGGAAAGGAAGGAGGCGCCCGCGATACGGAAGCTTCGGGGAGAAGATAGGAGGAGACGCGACGCACGCGGCCACAGTTTTCTCCTAAAATTAAAATTCTCTCTCTCTCTCTCTCTCGTAGAGTATTTGTCTGTGCGGTGTGGAGTA
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| CDS seq | ATGGCTAGACACCATGGAAACCATTCCCTACTGCCAGAGATGGTTCAACCCAATAATGAGCAACTCAACCAACCTCTGCCTTTAGGTCAGAAGTTATTTGTGCATGCTGGAAATGATGCAGCCCTTAAAATTGGCCCTTCATACCATGGGAATGTGGCAATTAGATCGAATGATCTTCCATCTTCAAGTCGAGTGGCACAATATTCAGGTCATAGAGTTAAAAACACAGGAACCTTACATAACTCCTATGTTCACTATCCTGCTGGAAGCTCTGGTGGCCATGTATCCTACAATCCTCAAACTGAACCTGTTATAACTTATCCACATAGATCTGAGGGAGAATTTGCTCGAGGGAGTTCCCAAATCGACAACAGAACTGCTGCAGTGAAACGAAAAAATCCTGTCATTTATCCAGAGTATAGCATCAATGGTGATGGTTATTGTGCCGGTAGCTCATCAAGTACCCAGTTCTCTAATTATCCACAGCCAGCTCCATTTTCTGAGTCCTTGCATCGTCAAATGCCTCCAAGTGTTGGCCCAATTAATTGGAATGACCAGAGCTTGGTAAATCAAGAAGGAAGTCAGAGAAATGTGAGGGCACGTCATAATTTTAATAATATTTCATTGGAACCTAGACCAGTCCATTCTACTTCGAATGTTTCCCAAAGTACATCAATGAAAAGGAATGGACCATCCTTTTCTACGCGAATGAGAACTATGCCTTCAGGTGCCTCTGGAATGCACTCTGGAGAAATGCCTTACACTATGGGAAGCAGCAACTCATCTGTTCCTGTCCCAACTTTACAAGGCTCTTCAAGCAGTGCAATATTTGCCAGTGGTGTCTTTGCACCTAGGCATGTTCATGGTGACACTGTTCCTAGCTACATTCATCTGCCTTCTGTAGCATCCTCTAGCTCTACAGCGATTCCCCATGAGGTGATCATTCCGAGCTACCAACCTGCTACCTCTGCAACTACCTCAACACCCATGAGGGCCAGTCAGCCATTACCTGTCAGAGCTGTTGCATCTTCTAGACATGCAAGGAATGTACTCATAGGGCATGCTAACAGCGGAAGGAACAGAAGGGCGAGAAGCTCATACTATGGTATTCAGCCTTTGATGATTGATGCACAGCAATTGATAATGATGCAACAATTTGCTCTCCGCGAATCAAGAGAAGCACAAGACCCCCACAGGGCCATGAGACTGGACATTGACAATATGAGTTATGAGGACCTGCTGGCTTTGGGAGAATCTATTGGTAATGTCTGCACAGGCTTGGTGGACGAGAAAATCTCAGGTTGTGTGAGAGAAGTGATCTATTGCAGTTCTGATGAACAGCAAAATGATCAAGATGATGGGAAATGTGCAATTTGTCTGGAGGAATACAAAGACAACAGTTTGCTGGGAATACTGAAATGCAATCACGACTTCCACACCGACTGCGTCAAGAAGTGGTTGAAGGAGAAGAACTCATGCCCAATTTGCAAGTCGGCTGCTGCATAG
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| Protein seq | MARHHGNHSLLPEMVQPNNEQLNQPLPLGQKLFVHAGNDAALKIGPSYHGNVAIRSNDLPSSSRVAQYSGHRVKNTGTLHNSYVHYPAGSSGGHVSYNPQTEPVITYPHRSEGEFARGSSQIDNRTAAVKRKNPVIYPEYSINGDGYCAGSSSSTQFSNYPQPAPFSESLHRQMPPSVGPINWNDQSLVNQEGSQRNVRARHNFNNISLEPRPVHSTSNVSQSTSMKRNGPSFSTRMRTMPSGASGMHSGEMPYTMGSSNSSVPVPTLQGSSSSAIFASGVFAPRHVHGDTVPSYIHLPSVASSSSTAIPHEVIIPSYQPATSATTSTPMRASQPLPVRAVASSRHARNVLIGHANSGRNRRARSSYYGIQPLMIDAQQLIMMQQFALRESREAQDPHRAMRLDIDNMSYEDLLALGESIGNVCTGLVDEKISGCVREVIYCSSDEQQNDQDDGKCAICLEEYKDNSLLGILKCNHDFHTDCVKKWLKEKNSCPICKSAAA |
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| Function | Probable E3 ubiquitin-protein ligase RHG1A [UniProtKB/Swiss-Prot:Q9FMM4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0159300 | OsNip_01t0159300-01 | Chr01 | 3100294 | 3105226 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTAGACACCATGGAAACCATTCCCTACTGCCAGAGATGGTTCAACCCAATAATGAGCAACTCAACCAACCTCTGCCTTTAGGTCAGAAGTTATTTGTGCATGCTGGAAATGATGCAGCCCTTAAAATTGGCCCTTCATACCATGGGAATGTGGCAATTAGATCGAATGATCTTCCATCTTCAAGTCGAGTGGCACAATATTCAGGTCATAGAGTTAAAAACACAGGAACCTTACATAACTCCTATGTTCACTATCCTGCTGGAAGCTCTGGTGGCCATGTATCCTACAATCCTCAAACTGAACCTGTTATAACTTATCCACATAGATCTGAGGGAGAATTTGCTCGAGGGAGTTCCCAAATCGACAACAGAACTGCTGCAGTGAAACGAAAAAATCCTGTCATTTATCCAGAGTATAGCATCAATGGTGATGGTTATTGTGCCGGTAGCTCATCAAGTACCCAGTTCTCTAATTATCCACAGCCAGCTCCATTTTCTGAGTCCTTGCATCGTCAAATGCCTCCAAGTGTTGGCCCAATTAATTGGAATGACCAGAGCTTGGTAAATCAAGAAGGAAGTCAGAGAAATGTGAGGGCACGTCATAATTTTAATAATATTTCATTGGAACCTAGACCAGTCCATTCTACTTCGAATGTTTCCCAAAGTACATCAATGAAAAGGAATGGACCATCCTTTTCTACGCGAATGAGAACTATGCCTTCAGGTGCCTCTGGAATGCACTCTGGAGAAATGCCTTACACTATGGGAAGCAGCAACTCATCTGTTCCTGTCCCAACTTTACAAGGCTCTTCAAGCAGTGCAATATTTGCCAGTGGTGTCTTTGCACCTAGGCATGTTCATGGTGACACTGTTCCTAGCTACATTCATCTGCCTTCTGTAGCATCCTCTAGCTCTACAGCGATTCCCCATGAGGTGATCATTCCGAGCTACCAACCTGCTACCTCTGCAACTACCTCAACACCCATGAGGGCCAGTCAGCCATTACCTGTCAGAGCTGTTGCATCTTCTAGACATGCAAGGAATGTACTCATAGGGCATGCTAACAGCGGAAGGAACAGAAGGGCGAGAAGCTCATACTATGGTATTCAGCCTTTGATGATTGATGCACAGCAATTGATAATGATGCAACAATTTGCTCTCCGCGAATCAAGAGAAGCACAAGACCCCCACAGGGCCATGAGACTGGACATTGACAATATGAGTTATGAGGACCTGCTGGCTTTGGGAGAATCTATTGGTAATGTCTGCACAGGCTTGGTGGACGAGAAAATCTCAGGTTGTGTGAGAGAAGTGATCTATTGCAGTTCTGATGAACAGCAAAATGATCAAGATGATGGGAAATGTGCAATTTGTCTGGAGGAATACAAAGACAACAGTTTGCTGGGAATACTGAAATGCAATCACGACTTCCACACCGACTGCGTCAAGAAGTGGTTGAAGGAGAAGAACTCATGCCCAATTTGCAAGTCGGCTGCTGCATAG
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| Protein seq | MARHHGNHSLLPEMVQPNNEQLNQPLPLGQKLFVHAGNDAALKIGPSYHGNVAIRSNDLPSSSRVAQYSGHRVKNTGTLHNSYVHYPAGSSGGHVSYNPQTEPVITYPHRSEGEFARGSSQIDNRTAAVKRKNPVIYPEYSINGDGYCAGSSSSTQFSNYPQPAPFSESLHRQMPPSVGPINWNDQSLVNQEGSQRNVRARHNFNNISLEPRPVHSTSNVSQSTSMKRNGPSFSTRMRTMPSGASGMHSGEMPYTMGSSNSSVPVPTLQGSSSSAIFASGVFAPRHVHGDTVPSYIHLPSVASSSSTAIPHEVIIPSYQPATSATTSTPMRASQPLPVRAVASSRHARNVLIGHANSGRNRRARSSYYGIQPLMIDAQQLIMMQQFALRESREAQDPHRAMRLDIDNMSYEDLLALGESIGNVCTGLVDEKISGCVREVIYCSSDEQQNDQDDGKCAICLEEYKDNSLLGILKCNHDFHTDCVKKWLKEKNSCPICKSAAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 5.522336 | 5.282758 | 9.659600 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_05g0163400 | RBH | 2.791610 | 2.301666 | 7.370889 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g06590 | RBH | 2.597907 | 2.530292 | 1.793300 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0159300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0004380 | RBH | 1.006365 | 11.881965 | 5.828438 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0004120 | RBH | 0.367278 | 5.675776 | 3.003194 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0004370 | RBH | 1.301227 | 11.324610 | 8.713807 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0003950 | RBH | 0.173536 | 0.489211 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0004230 | RBH | 18.650673 | 21.442846 | 22.389839 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0055800 | RBH | 12.071278 | 92.5642165 | 48.184425 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0004150 | RBH | 0.841261 | 1.402955 | 1.601686 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0056900 | RBH | 20.9865035 | 102.550442 | 4.522957 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0003980 | RBH | 0.396982 | 0.438347 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0004120 | RBH | 1.387284 | 14.026451 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0004210 | RBH | 9.613464 | 15.041080 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0004200 | RBH | 0.654098 | 0.709731 | 1.083870 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0004130 | RBH | 0.662927 | 6.793380 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G004190 | RBH | 0.889873 | 6.288321 | 1.674899 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0004060 | RBH | 3.166989 | 46.253586 | 13.616658 |
