Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0146200 | OGI:01007830 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:2500280-2501248 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ACCATCTCTGTCGTCCAACCTCTTAGTTTCCTGCTTGGTTTTGATCGATTCAAGCTAGTAAACGCTGATCATGGTGAACGTTGCTCGCTTGGATCAGGCTGACGGCGCTGCGTCCAAGATCGCCACGGCGCGGGCGCTGGGGGCGTTCGGCCTCGCCACAGCCTCTCTGGCCATCAATCTGGCCGCGACACGCGGGGCACCGTCGTGCTTCGGTGACAGCGCCTGGTACTACCACCTCGCTCTCGTGGGTTCCTTCCTCTCCGGAGTGGCCCAGGTGGCCGCCGCCGTCTGGGTCGCCGACGACCCTCGCGGCCGCCATGCCGTCGGCAAGAAAATCATGTACCCCTCTATTGCACCCCTCCTCGTGGCCGTCGGCCTCACCGGAGCGGCTCTGCTCTGGTAATATTTCCAGTTTTCCACCTTGGTTCATCTACACGTACCAACACCGACATCGCCGCCTACCGCGCCAGCTTCTCCCCGCAGGATCGGCGCGAATGTATCTGTTAACAACCCTCTCCTTCCAAACTCGGTAATCTCAAGAACAATCCAATTCAATACAATCTCAGGAAAATAGAAGAGGAATTGAAGGAGAAGAAGTAGAGGATGCTTCTAGAAGTGGCAGTGAGGAGGACCATGGAGAGAGAGAAGGATAGAGATCGACGAGGTTCAACCGAACCAAGCCGCCGCCGCCGCCGTGGCCGAAGCCGCCGATTCCTGATCTGTTCGATTCCCCTGGTAAGAGTTGTCCTGTTGTTTTGTAGCTTCACCTTGGACTGGCCTGGGCCAACATTAGGAGAGTTGATGGACTGGCCCATTTGGCAGCCCAGCCAGGACCTTAACAGTATCTTACCTGTTTGATTTGTGTGATGTTGCTTTCTTGATGTTTGCTGTTTGGGTCATCGATCGTGCTTTTGTGTATCACCTCGAGTATCTAGTATCTACCATCAATCAATCACGCTGTTTCCCTCC
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| CDS seq | ATGGTGAACGTTGCTCGCTTGGATCAGGCTGACGGCGCTGCGTCCAAGATCGCCACGGCGCGGGCGCTGGGGGCGTTCGGCCTCGCCACAGCCTCTCTGGCCATCAATCTGGCCGCGACACGCGGGGCACCGTCGTGCTTCGGTGACAGCGCCTGGTACTACCACCTCGCTCTCGTGGGTTCCTTCCTCTCCGGAGTGGCCCAGGTGGCCGCCGCCGTCTGGGTCGCCGACGACCCTCGCGGCCGCCATGCCGTCGGCAAGAAAATCATGTACCCCTCTATTGCACCCCTCCTCGTGGCCGTCGGCCTCACCGGAGCGGCTCTGCTCTGGTAA |
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| Protein seq | MVNVARLDQADGAASKIATARALGAFGLATASLAINLAATRGAPSCFGDSAWYYHLALVGSFLSGVAQVAAAVWVADDPRGRHAVGKKIMYPSIAPLLVAVGLTGAALLW |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0146200 | OsNip_01t0146200-01 | Chr01 | 2500280 | 2501248 | + | RAP2018-11-26 | ||
| CDS seq | ATGGTGAACGTTGCTCGCTTGGATCAGGCTGACGGCGCTGCGTCCAAGATCGCCACGGCGCGGGCGCTGGGGGCGTTCGGCCTCGCCACAGCCTCTCTGGCCATCAATCTGGCCGCGACACGCGGGGCACCGTCGTGCTTCGGTGACAGCGCCTGGTACTACCACCTCGCTCTCGTGGGTTCCTTCCTCTCCGGAGTGGCCCAGGTGGCCGCCGCCGTCTGGGTCGCCGACGACCCTCGCGGCCGCCATGCCGTCGGCAAGAAAATCATGTACCCCTCTATTGCACCCCTCCTCGTGGCCGTCGGCCTCACCGGAGCGGCTCTGCTCTGGTAA
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| Protein seq | MVNVARLDQADGAASKIATARALGAFGLATASLAINLAATRGAPSCFGDSAWYYHLALVGSFLSGVAQVAAAVWVADDPRGRHAVGKKIMYPSIAPLLVAVGLTGAALLW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0145000 | RBH | 0.0 | 0.0 | 1.070271 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05310 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0146200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0003300 | RBH | 0.0 | 0.0 | 0.593257 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0003090 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003280 | RBH | 0.0 | 0.0 | 0.827622 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002990 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0003150 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0041200 | SBH | 0.04096 | 0.0537215 | 0.8857865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0003080 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0043400 | RBH | 0.440822 | 0.51673 | 0.095061 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002960 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0003080 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0003180 | RBH | 5.635618 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003220 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0003060 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003270 | RBH | 0.0 | 0.0 | 0.588463 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0003120 | RBH | 0.779094 | 0.0 | 1.286745 |
