Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0143300 | OGI:01007510 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:2357871-2360437 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | GAATATCCTAACTGAAGCATTTCCATTGGTTCCAACATCCAGGTTCATGACTCATGAGCCATTATGATACTGCCAAAAAACTTGGTCACGACAACGACCTTAAACGCCTAAATAAGCATACATTCACAATTCATGGTCCATGTATACTTATAGAAAGGAGCGGTTCACAGCCCTCAAAACTAATCTTATGGCAAGGAAATGATTGTGTTAATCATTAATTCCTAACAAAATCCTTCAGCCGCCTCAGCCAGATGAGGTATTCTCGGCTGTCCTTGTTGATCATGTACTCGTGTAGGAAGTTTGTGGCCATGGGCGTAATCCCGCGCATCTCCAGGTACTTGTGGAATGCCCTTTGCAGGTTTTCATCAAGGTCACTGCAGCAGACAAAGGGCAAGGTGTTGAACATTAGCACTCGGTGACAGTGATTAGTTGAAGAATTTGAGTGTTCAATAAATTTAAATACACTAGGTTTGGTTTTCTTACTTGAAATCAGGGCCCTCATACGTGATCATTTCATCTTCCCCACTCTCTGATGGCATCACAGACAAGGCATCGATGAGGATCTCATCAGGATAGGCAGTGCAGATGAATTCAAGGCTTGGTCCCTCTTCTCCCTTCGAGATGGTGACAGTTAGAGGAATGCTAGATTTTGGGGCCTTCTGAGTTTCTTCCTCCTGATCATCCTCGTTTCTGTCCTCATCAGCCTCATTCTCACGGTCAGGTTCATCGCCAGTCACAAGACTGGGCATGGAAACTAGAACCTCAATATTCTCACCCTGGTAAGTTCTTGTGAGAGTAATTGAATTAAAGCCCTTTTCATCACTAATTTTAAAGGGGAAGTTGTCAGGAATCTCCTCAACCTGTGTCAGGATGAAAAAGAAAATGAGGCTCTCAGACAGACAGTGACAGAAAATTGCTCCTGGAAAAGCATGGAAATTGTTCAAAGCAAAGATGAAAGTAAAACATAGTGTTCTCAGAAGAAAAATATAACTGGGAGTTCAATTATTTCTGACCCTCATGGTTTCTTTTTGCATTGTATGTGTACAACTCTACACTAAATCATGCCATAATTAAAATTTGATGCAAGACTAGATCACCAGAACGAGATGCTTGATGTCAAAACAGCAGGGATTGCAAAGTCTTATATCTGTGTGATAGAAACTACACTTCCTTTGTTGGTTTTTCTTCTCTTCAAACAAGCAAGAAATATCAAACAGTGCATGATGCAAAAGCATGGATGCTTTTAGGCTTGGAAACTTAGGAGCATAACCCAAAAAGGTCGTTAGAACACCATTTTTCCAGCCCAAGTACATAACATTAAATTGACCAGCACTTTAATGCATTAAGCTTATATATGAATACAAAATATAAGTATGTATAATATGCATAGAGTAATCAAGCTGGCATGAAAACTTAAACTGTACAGTTCGAGAAAAATAATCAGGTCCCCTCAAAAACTCAAGAAAAAGGACAGGGACTAGACACAATGATTCATAAAACACCAACAGAGTTTTAAGCAGCAGAAAAGTTTCAAAATAAAAGATTTTAGAAACCAACATTAATAGAATAAGACTACAGGGGGGAAAAGGTAATAATAAAGAGCACAAGAGGTTATAATAAAGAACACAAGGAACAAGAGCAAAAGGAACATTGAGTTCTTACACAGAGAAACACATGAATCATTGCACAAAATTAAGCACAGTACAATATGATCAAACACAAAAATAGTGCCATAACTGCAAAGAAGTGACACCCAAAATATATTTATAATCAAGAGATGTTGAGGTTAAACATGGGCATGAAAAAGTGGAATACCAAATATATATTTGTACCAAGTACTACCTCAGTCTCAGCAGAGCAATGACCACGCTATAAACATAATAACGCTACCAATATATCCTTGTACCAAAATACTACCACACAATCTCAACAGAACAATAAGTATGCTTCACGCTACCAATTGCAGAAGGAAGTAGAAGAACAAAATACCTAAAATAAGTGAGTAAATAACAGACGCCCAATTCCCACTACTGAAATATACTAAGAACGTAATGCAAACCAGCAGATGAACTATCTAACAAAGGCAGGGCTGCTACTTTGATTCCATCCATGCTAATATGAACAAAATTACAGAAAATAAAGGGGATTCAGGATGCCAAAAAAAAAAAGAGGCTCTTCTTTTACGACATACGGACAGAGCGAAATAGCAAAATTAGTGAGATCCCGGGAACTCGCGCACGCACCCGGTCGTGGTCGTCGCTCTCCTCGGCGAACTTGATCTCGGCGTCGATGATGCGGAGGAGCTCGCCATCTGAGCTGGGCCTCGTGGAGGGGGCCGACGAGAAGGGCATCGAGCGAGGCTGCGGCCGCGCCGCGGCGGCGGCGGCCAGGGGGCGGAGCAGGGCGGCGGCGCCGCGGGTGGTCCCCGCGGCGGAGGCGGAGGCGCGGAGGAGGGGGAGGGTGGAGGTGGCGGCGCGGCGAGCGGCGGCGAAGAGAGCCATGGCGACCCGTGCGGCGGCGCGGACGAAAGGTTAGGGTTTTCGGGGGTTTAGGAGGAGTTTTTTTCT
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| CDS seq | ATGGCTCTCTTCGCCGCCGCTCGCCGCGCCGCCACCTCCACCCTCCCCCTCCTCCGCGCCTCCGCCTCCGCCGCGGGGACCACCCGCGGCGCCGCCGCCCTGCTCCGCCCCCTGGCCGCCGCCGCCGCGGCGCGGCCGCAGCCTCGCTCGATGCCCTTCTCGTCGGCCCCCTCCACGAGGCCCAGCTCAGATGGCGAGCTCCTCCGCATCATCGACGCCGAGATCAAGTTCGCCGAGGAGAGCGACGACCACGACCGGGTTGAGGAGATTCCTGACAACTTCCCCTTTAAAATTAGTGATGAAAAGGGCTTTAATTCAATTACTCTCACAAGAACTTACCAGGGTGAGAATATTGAGGTTCTAGTTTCCATGCCCAGTCTTGTGACTGGCGATGAACCTGACCGTGAGAATGAGGCTGATGAGGACAGAAACGAGGATGATCAGGAGGAAGAAACTCAGAAGGCCCCAAAATCTAGCATTCCTCTAACTGTCACCATCTCGAAGGGAGAAGAGGGACCAAGCCTTGAATTCATCTGCACTGCCTATCCTGATGAGATCCTCATCGATGCCTTGTCTGTGATGCCATCAGAGAGTGGGGAAGATGAAATGATCACGTATGAGGGCCCTGATTTCAATGACCTTGATGAAAACCTGCAAAGGGCATTCCACAAGTACCTGGAGATGCGCGGGATTACGCCCATGGCCACAAACTTCCTACACGAGTACATGATCAACAAGGACAGCCGAGAATACCTCATCTGGCTGAGGCGGCTGAAGGATTTTGTTAGGAATTAA
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| Protein seq | MALFAAARRAATSTLPLLRASASAAGTTRGAAALLRPLAAAAAARPQPRSMPFSSAPSTRPSSDGELLRIIDAEIKFAEESDDHDRVEEIPDNFPFKISDEKGFNSITLTRTYQGENIEVLVSMPSLVTGDEPDRENEADEDRNEDDQEEETQKAPKSSIPLTVTISKGEEGPSLEFICTAYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPMATNFLHEYMINKDSREYLIWLRRLKDFVRN |
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| Function | Uncharacterized protein At2g39795, mitochondrial [UniProtKB/Swiss-Prot:Q8W487] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0143300 | OsNip_01t0143300-01 | Chr01 | 2357871 | 2360437 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCTCTCTTCGCCGCCGCTCGCCGCGCCGCCACCTCCACCCTCCCCCTCCTCCGCGCCTCCGCCTCCGCCGCGGGGACCACCCGCGGCGCCGCCGCCCTGCTCCGCCCCCTGGCCGCCGCCGCCGCGGCGCGGCCGCAGCCTCGCTCGATGCCCTTCTCGTCGGCCCCCTCCACGAGGCCCAGCTCAGATGGCGAGCTCCTCCGCATCATCGACGCCGAGATCAAGTTCGCCGAGGAGAGCGACGACCACGACCGGGTTGAGGAGATTCCTGACAACTTCCCCTTTAAAATTAGTGATGAAAAGGGCTTTAATTCAATTACTCTCACAAGAACTTACCAGGGTGAGAATATTGAGGTTCTAGTTTCCATGCCCAGTCTTGTGACTGGCGATGAACCTGACCGTGAGAATGAGGCTGATGAGGACAGAAACGAGGATGATCAGGAGGAAGAAACTCAGAAGGCCCCAAAATCTAGCATTCCTCTAACTGTCACCATCTCGAAGGGAGAAGAGGGACCAAGCCTTGAATTCATCTGCACTGCCTATCCTGATGAGATCCTCATCGATGCCTTGTCTGTGATGCCATCAGAGAGTGGGGAAGATGAAATGATCACGTATGAGGGCCCTGATTTCAATGACCTTGATGAAAACCTGCAAAGGGCATTCCACAAGTACCTGGAGATGCGCGGGATTACGCCCATGGCCACAAACTTCCTACACGAGTACATGATCAACAAGGACAGCCGAGAATACCTCATCTGGCTGAGGCGGCTGAAGGATTTTGTTAGGAATTAA
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| Protein seq | MALFAAARRAATSTLPLLRASASAAGTTRGAAALLRPLAAAAAARPQPRSMPFSSAPSTRPSSDGELLRIIDAEIKFAEESDDHDRVEEIPDNFPFKISDEKGFNSITLTRTYQGENIEVLVSMPSLVTGDEPDRENEADEDRNEDDQEEETQKAPKSSIPLTVTISKGEEGPSLEFICTAYPDEILIDALSVMPSESGEDEMITYEGPDFNDLDENLQRAFHKYLEMRGITPMATNFLHEYMINKDSREYLIWLRRLKDFVRN
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 4.086484 | 2.538845 | 7.210595 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0143700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g05010 | RBH | 2.509084 | 1.550384 | 1.685269 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0143300 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002980 | RBH | 0.638133 | 2.350546 | 4.546583 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002900 | RBH | 0.351960 | 1.964211 | 3.779022 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0003020 | RBH | 0.384608 | 16.241112 | 12.423468 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002840 | RBH | 0.097512 | 0.959149 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002960 | RBH | 5.438107 | 37.816650 | 13.874720 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0039800 | RBH | 10.0354385 | 13.267869 | 9.721514 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002880 | RBH | 0.341571 | 2.139521 | 1.428936 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0040500 | RBH | 6.6434445 | 8.0590805 | 31.8890565 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002780 | RBH | 0.227178 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002950 | RBH | 0.000000 | 13.785558 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002980 | RBH | 1.681188 | 38.855347 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0003030 | RBH | 0.000000 | 1.498618 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002890 | RBH | 0.352158 | 9.985013 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G003080 | RBH | 1.581996 | 14.532854 | 3.385002 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002920 | RBH | 0.854761 | 23.095083 | 17.978355 |
