Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0140700 | OGI:01007080 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:2154326-2155279 | ||||||||
| Gene Symbol | AP2/EREBP77, AP2/EREBP#077, OsRAV1, RAV1, OsRAV8, RAV8 | ||||||||||
| DNA seq | ATGGAGCAAGAAGCTGCCATGGTCGTCTTCTCCTGCAACTCCGGCTCCGGTGGGTCGTCGTCGACGACCGATTCAAAGCAAGAGGAGGAGGAGGAGGAGGAGTTGGCCGCAATGGAGGAAGACGAGTTGATCCACGTCGTCCAGGCGGCGGAGCTGCGGCTGCCGTCGTCGACGACGGCGACGCGGCCGTCGTCGCGGTACAAGGGGGTGGTGCCGCAGCCGAACGGGCGGTGGGGGGCGCAGATCTACGAGCGGCACGCGCGGGTGTGGCTCGGGACGTTCCCCGACGAGGAGGCGGCGGCGCGCGCCTACGACGTGGCGGCGCTCCGCTTCCGGGGGCGCGACGCCGTCACCAACCGCGCCCCGGCGGCGGAGGGCGCGTCCGCCGGCGAGCTCGCGTTCCTGGCCGCGCACTCCAAGGCGGAGGTCGTGGACATGCTGCGGAAGCACACCTACGACGACGAGCTCCAGCAGGGCCTCCGCCGCGGCTCGCGCGCGCAGCCGACGCCGCGGTGGGCGCGCGAGCCGCTGTTCGAGAAGGCCGTGACGCCGAGCGACGTCGGCAAGCTCAACCGCCTCGTGGTGCCCAAGCAGCAGGCCGAGAGGCATTTCCCGTTCCCGCTCCGCCGCCACAGCTCCGACGCCGCCGGCAAGGGCGTGCTCCTCAACTTCGAGGACGGCGACGGCAAGGTGTGGCGATTCCGGTACTCGTACTGGAACAGCAGCCAGAGTTACGTGCTCACCAAGGGGTGGAGCCGATTCGTGAGGGAGAAGGGCCTCCGACCAGGCGACACCGTGGCCTTCTCCCGGTCGGCGGCGGCGTGGGGGACGGAGAAGCACCTCCTCATCGACTGCAAGAAGATGGAGAGGAACAACCTGGCAACCGTCGACGACGATGCCCGTGTCGTCGTCAAGCTGTTCGGCGTTGACATCGCCGGAGACAAGACGAGGTAA
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| CDS seq | ATGGAGCAAGAAGCTGCCATGGTCGTCTTCTCCTGCAACTCCGGCTCCGGTGGGTCGTCGTCGACGACCGATTCAAAGCAAGAGGAGGAGGAGGAGGAGGAGTTGGCCGCAATGGAGGAAGACGAGTTGATCCACGTCGTCCAGGCGGCGGAGCTGCGGCTGCCGTCGTCGACGACGGCGACGCGGCCGTCGTCGCGGTACAAGGGGGTGGTGCCGCAGCCGAACGGGCGGTGGGGGGCGCAGATCTACGAGCGGCACGCGCGGGTGTGGCTCGGGACGTTCCCCGACGAGGAGGCGGCGGCGCGCGCCTACGACGTGGCGGCGCTCCGCTTCCGGGGGCGCGACGCCGTCACCAACCGCGCCCCGGCGGCGGAGGGCGCGTCCGCCGGCGAGCTCGCGTTCCTGGCCGCGCACTCCAAGGCGGAGGTCGTGGACATGCTGCGGAAGCACACCTACGACGACGAGCTCCAGCAGGGCCTCCGCCGCGGCTCGCGCGCGCAGCCGACGCCGCGGTGGGCGCGCGAGCCGCTGTTCGAGAAGGCCGTGACGCCGAGCGACGTCGGCAAGCTCAACCGCCTCGTGGTGCCCAAGCAGCAGGCCGAGAGGCATTTCCCGTTCCCGCTCCGCCGCCACAGCTCCGACGCCGCCGGCAAGGGCGTGCTCCTCAACTTCGAGGACGGCGACGGCAAGGTGTGGCGATTCCGGTACTCGTACTGGAACAGCAGCCAGAGTTACGTGCTCACCAAGGGGTGGAGCCGATTCGTGAGGGAGAAGGGCCTCCGACCAGGCGACACCGTGGCCTTCTCCCGGTCGGCGGCGGCGTGGGGGACGGAGAAGCACCTCCTCATCGACTGCAAGAAGATGGAGAGGAACAACCTGGCAACCGTCGACGACGATGCCCGTGTCGTCGTCAAGCTGTTCGGCGTTGACATCGCCGGAGACAAGACGAGGTAA
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| Protein seq | MEQEAAMVVFSCNSGSGGSSSTTDSKQEEEEEEELAAMEEDELIHVVQAAELRLPSSTTATRPSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTNRAPAAEGASAGELAFLAAHSKAEVVDMLRKHTYDDELQQGLRRGSRAQPTPRWAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEKHLLIDCKKMERNNLATVDDDARVVVKLFGVDIAGDKTR |
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| Function | Putative AP2/ERF and B3 domain-containing protein Os01g0140700 [UniProtKB/Swiss-Prot:Q9AWS7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0140700 | OsNip_01t0140700-00 | Chr01 | 2154326 | 2155279 | + | RAP2018-11-26 | ||
| CDS seq | ATGGAGCAAGAAGCTGCCATGGTCGTCTTCTCCTGCAACTCCGGCTCCGGTGGGTCGTCGTCGACGACCGATTCAAAGCAAGAGGAGGAGGAGGAGGAGGAGTTGGCCGCAATGGAGGAAGACGAGTTGATCCACGTCGTCCAGGCGGCGGAGCTGCGGCTGCCGTCGTCGACGACGGCGACGCGGCCGTCGTCGCGGTACAAGGGGGTGGTGCCGCAGCCGAACGGGCGGTGGGGGGCGCAGATCTACGAGCGGCACGCGCGGGTGTGGCTCGGGACGTTCCCCGACGAGGAGGCGGCGGCGCGCGCCTACGACGTGGCGGCGCTCCGCTTCCGGGGGCGCGACGCCGTCACCAACCGCGCCCCGGCGGCGGAGGGCGCGTCCGCCGGCGAGCTCGCGTTCCTGGCCGCGCACTCCAAGGCGGAGGTCGTGGACATGCTGCGGAAGCACACCTACGACGACGAGCTCCAGCAGGGCCTCCGCCGCGGCTCGCGCGCGCAGCCGACGCCGCGGTGGGCGCGCGAGCCGCTGTTCGAGAAGGCCGTGACGCCGAGCGACGTCGGCAAGCTCAACCGCCTCGTGGTGCCCAAGCAGCAGGCCGAGAGGCATTTCCCGTTCCCGCTCCGCCGCCACAGCTCCGACGCCGCCGGCAAGGGCGTGCTCCTCAACTTCGAGGACGGCGACGGCAAGGTGTGGCGATTCCGGTACTCGTACTGGAACAGCAGCCAGAGTTACGTGCTCACCAAGGGGTGGAGCCGATTCGTGAGGGAGAAGGGCCTCCGACCAGGCGACACCGTGGCCTTCTCCCGGTCGGCGGCGGCGTGGGGGACGGAGAAGCACCTCCTCATCGACTGCAAGAAGATGGAGAGGAACAACCTGGCAACCGTCGACGACGATGCCCGTGTCGTCGTCAAGCTGTTCGGCGTTGACATCGCCGGAGACAAGACGAGGTAA
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| Protein seq | MEQEAAMVVFSCNSGSGGSSSTTDSKQEEEEEEELAAMEEDELIHVVQAAELRLPSSTTATRPSSRYKGVVPQPNGRWGAQIYERHARVWLGTFPDEEAAARAYDVAALRFRGRDAVTNRAPAAEGASAGELAFLAAHSKAEVVDMLRKHTYDDELQQGLRRGSRAQPTPRWAREPLFEKAVTPSDVGKLNRLVVPKQQAERHFPFPLRRHSSDAAGKGVLLNFEDGDGKVWRFRYSYWNSSQSYVLTKGWSRFVREKGLRPGDTVAFSRSAAAWGTEKHLLIDCKKMERNNLATVDDDARVVVKLFGVDIAGDKTR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04750 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0140700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002810 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002730 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002850 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002690 | RBH | 0.0 | 0.054554 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002790 | RBH | 0.0 | 1.863597 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0038000 | RBH | 0.304299 | 2.8423185 | 0.0144945 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002720 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0038200 | RBH | 0.3623 | 0.68146 | 0.0643185 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002610 | RBH | 0.0 | 0.111408 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002780 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002810 | RBH | 0.0 | 6.536480 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002850 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002730 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002910 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002750 | RBH | 0.0 | 0.0 | 0.0 |
