Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0136450 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1961587-1962403 | ||||||||
| Gene Symbol | WAK1, OsWAK1, WAK-1, RLCK20, OsRLCK20 | ||||||||||
| DNA seq | TTAGCGATGACGACTGCCTTATCAACCAATAAACAAGTCACTGATTGATTAACGGATTCGATAAAGTTGACACCATAAATTTTACGCATTTCCTCCTCCCGAAAGTGATGATTAAATGGATAATTTCGCGAACGAACTTACCAGATGACGGCGTCTCTTGCCATGTCAAGAGGAAGCCGTCGCGGATGAGCTGCTCATAGCTCCTCGCGTCCGTGCCCAGCACCGGCACGACGGTAGCATTGCAGCCTTCCATGTAAAACGCCGGGTAGTCGCCCGAATCACTGTAATTCCCTCCTACGCGAGCAAACGTCTTGTTGCCGCACCTCGTCTCCACGAGGTCGTCGTCTCCGTCCCGCGGCACAAGCGCCTTATTGCAACTGTACAGGAAGAGGTTGAGATTGGTGGTGCTGATGGAGAACGGGAGGCCGACCTTGGAGGAGGTGTTGGTCCTCGGAACATGGCAGGAGTATTCTTTGCTGACGCCGGAGAAGACAATGAAGTCACCGAGCTTGTGGATGTCAGAGACGAGCAATGAATTGTTGCCGTAGAAGATGTCGAGGATCTGGATCCGATATCTGGGCTTGTAGTAGCCGAGGTATGGAGTGTCGTTGTGGCAGATAACCTGGAATCCAAGCCAGCCGCATTTGCTCTCCGTTGCCTGCTCCGGCACGACGGCGAACGGCGACGAGATGGTCACCTTGCCACATACAGTACTGGCCGCGCAGCCTTCTTGTGGACGATTGTCTGCCGCCGTATTCGCTGCTTGACTCGCCCAGGCGAGGCAGGCGAACAAGAGGAACAAGGAAGGAGAGGGCAT
More
|
||||||||||
| CDS seq | ATGCCCTCTCCTTCCTTGTTCCTCTTGTTCGCCTGCCTCGCCTGGGCGAGTCAAGCAGCGAATACGGCGGCAGACAATCGTCCACAAGAAGGCTGCGCGGCCAGTACTGTATGTGGCAAGGTGACCATCTCGTCGCCGTTCGCCGTCGTGCCGGAGCAGGCAACGGAGAGCAAATGCGGCTGGCTTGGATTCCAGGTTATCTGCCACAACGACACTCCATACCTCGGCTACTACAAGCCCAGATATCGGATCCAGATCCTCGACATCTTCTACGGCAACAATTCATTGCTCGTCTCTGACATCCACAAGCTCGGTGACTTCATTGTCTTCTCCGGCGTCAGCAAAGAATACTCCTGCCATGTTCCGAGGACCAACACCTCCTCCAAGGTCGGCCTCCCGTTCTCCATCAGCACCACCAATCTCAACCTCTTCCTGTACAGTTGCAATAAGGCGCTTGTGCCGCGGGACGGAGACGACGACCTCGTGGAGACGAGGTGCGGCAACAAGACGTTTGCTCGCGTAGGAGGGAATTACAGTGATTCGGGCGACTACCCGGCGTTTTACATGGAAGGCTGCAATGCTACCGTCGTGCCGGTGCTGGGCACGGACGCGAGGAGCTATGAGCAGCTCATCCGCGACGGCTTCCTCTTGACATGGCAAGAGACGCCGTCATCTGGCAGTCGTCATCGCTAA
More
|
||||||||||
| Protein seq | MPSPSLFLLFACLAWASQAANTAADNRPQEGCAASTVCGKVTISSPFAVVPEQATESKCGWLGFQVICHNDTPYLGYYKPRYRIQILDIFYGNNSLLVSDIHKLGDFIVFSGVSKEYSCHVPRTNTSSKVGLPFSISTTNLNLFLYSCNKALVPRDGDDDLVETRCGNKTFARVGGNYSDSGDYPAFYMEGCNATVVPVLGTDARSYEQLIRDGFLLTWQETPSSGSRHR |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0136450 | OsNip_01t0136450-00 | Chr01 | 1961587 | 1962403 | - | RAP2018-11-26 | ||
| CDS seq | ATGCCCTCTCCTTCCTTGTTCCTCTTGTTCGCCTGCCTCGCCTGGGCGAGTCAAGCAGCGAATACGGCGGCAGACAATCGTCCACAAGAAGGCTGCGCGGCCAGTACTGTATGTGGCAAGGTGACCATCTCGTCGCCGTTCGCCGTCGTGCCGGAGCAGGCAACGGAGAGCAAATGCGGCTGGCTTGGATTCCAGGTTATCTGCCACAACGACACTCCATACCTCGGCTACTACAAGCCCAGATATCGGATCCAGATCCTCGACATCTTCTACGGCAACAATTCATTGCTCGTCTCTGACATCCACAAGCTCGGTGACTTCATTGTCTTCTCCGGCGTCAGCAAAGAATACTCCTGCCATGTTCCGAGGACCAACACCTCCTCCAAGGTCGGCCTCCCGTTCTCCATCAGCACCACCAATCTCAACCTCTTCCTGTACAGTTGCAATAAGGCGCTTGTGCCGCGGGACGGAGACGACGACCTCGTGGAGACGAGGTGCGGCAACAAGACGTTTGCTCGCGTAGGAGGGAATTACAGTGATTCGGGCGACTACCCGGCGTTTTACATGGAAGGCTGCAATGCTACCGTCGTGCCGGTGCTGGGCACGGACGCGAGGAGCTATGAGCAGCTCATCCGCGACGGCTTCCTCTTGACATGGCAAGAGACGCCGTCATCTGGCAGTCGTCATCGCTAA
More
|
|||||||
| Protein seq | MPSPSLFLLFACLAWASQAANTAADNRPQEGCAASTVCGKVTISSPFAVVPEQATESKCGWLGFQVICHNDTPYLGYYKPRYRIQILDIFYGNNSLLVSDIHKLGDFIVFSGVSKEYSCHVPRTNTSSKVGLPFSISTTNLNLFLYSCNKALVPRDGDDDLVETRCGNKTFARVGGNYSDSGDYPAFYMEGCNATVVPVLGTDARSYEQLIRDGFLLTWQETPSSGSRHR
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 1.719568 | 1.338734 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0137200 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g04480 | SBH | 0.0 | 0.0 | 0.187849 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0136450 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002590 | SBH | 0.146139 | 0.000000 | 0.280715 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0002440 | RBH | 2.433774 | 9.622909 | 4.370258 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002660 | SBH | 0.086951 | 1.405004 | 0.239140 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0002460 | SBH | 1.044627 | 0.183400 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002530 | RBH | 35.548290 | 13.371234 | 7.509351 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0033300 | SBH | 0.3599865 | 0.7996085 | 1.4546695 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0002510 | RBH | 1.200608 | 0.941127 | 1.098126 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0033200 | SBH | 0.1981115 | 0.6357785 | 0.4675505 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0002350 | RBH | 0.985835 | 0.241587 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002510 | RBH | 2.320768 | 18.288895 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002640 | SBH | 0.000000 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002540 | RBH | 2.310927 | 0.473494 | 0.174609 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0002460 | RBH | 3.364285 | 13.707711 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002700 | SBH | 0.364793 | 0.274939 | 0.455609 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002540 | SBH | 6.454588 | 34.987957 | 6.844718 |
