Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0128000 | OGI:01005250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1549241-1551011 | ||||||||
| Gene Symbol | MYB1 | ||||||||||
| DNA seq | ACATTAACAAAGTACTACTACTAACAATAGTTACATGCACCATCGATCGATCAACCACTACAAGAAGCTAGCTAGCTCTAGCTAATATGTTTAAACACATCTCAATAATATTCTCTCCATCGATCGGAATCATCACGCTATTGATCATCTTCTACTTTTGATTTTTGCTTGATCGATCACTAGTACTTCTATCTTGATCGATATGATGGAACAACTCATCCATTAGCTAATGTGACAGCATCATCAACATCATCATCATGATCATCATCTCATCTCGCTTTAATGGAGAGACATCACAAGAAGCAACTTACCATCTCATCTATCCATGATCCATCCATCCACTTAGCCTTTAGCTACAGCTAAGCTCAGCTGGATACGTAGCTACCTAGCTAGCTAGCTAGATTCCTCCTCCCCACTCGCCGAGCTTTCTCGCCGCCGCTTGGCACACCTCGTCGGACCTCCACGTGTCGCCGCCGTCCATGGCGCCGCCGCAGTAGTTGTAGCTGCCGGCGTTGCCGGAGGCGGTCATCATCGTCATCATGGCGCTGCCGGTGCAGCTGGAGTTGAGGTAGTCGAGGAGCGTCGAGTCGGAGTAGTACTCGGCCGGACCAAGGTCCAGCCCGTCGAGGCTGAGGCTTCCCAGCGCCGACGCCGAGTCGACGAACACGCCGGCGGCGCCGTCGTCGAGCTCGCCGGAGGACTGCATCTGCTGGTCCCATCTCAGCTCGGAGAAGCAGGGCAGCGGCTGGAACGCCGCCGCGGCCGCCGTCGAGCCGGCCGACGTCGACGTGCTCGGGCTCGGGTCGATGTGGTGGTGGTACACGTTGTTCGGGACGACGCACGCCGTTGCTGCTTCTGCTTGCTGCAGGTGGGTGTCGAAGTCGAACGGCGAGGAGGAGGCGGTGGCCATGGCGGCGTGGTGGTGGAGTGGCGGTGGCGGCGGCGGAGTGGGGTCGGTGGCTGCTCCGGCCATCTTCTCGAGGAGGCGAGGCATCCAATAGCAGCGGACGGCGTCGCGGAAGACGGTGCTGTTGGCGTCGACCTTGAGCTGCCTGGCCTGCTTCTGCACCCTCGTCCTCCAGTAGTTCTTGATCTCGTTGTCCGTCCTCCCCGGCAGATGCTGCGCTATCCTCGACCACCTGATCAATCAAATTAACCAATCGATCTTGATCAGAGATAATTGATTTTGATTGATATATATGTGCAGATTGATCAAATCAATATGTATACCTACCTGTTTCCCCACCTGGAATGGAGCTCAAGAATGAGCAGCTGCTCCTCCGGCGTCAGATTCCCGCGCTTTATGTCAGGCTTGAGGTAGTTGAGCCATCTTAGCCTGCAGCTCTTGCCCGTCCTCTTCAACCCTAATCGATTAATTAACCCAAATTTGTTCAAGATTGATTGTACTTGACCTAGATGCCATGGTTAGATCGATGATGATTGCAGAGTGACGGAGGACTCACCGGAGCAGCGGGCGAGGAGATTCCAGCGGCCTTCGCCATGGCAGGCAATGTAGTTCATGAGGAGGTTGTCTTCCTCGAGGGTCCATGGTCCTCGCCTCAGCTCCATCATCTCCTCTGCCATGGCCTCCTGCTGCTGCTTGCTCATCACTCCCATGGGCCCTGCAACTCTCCTCTGCGACATTGCTGTCTACTACCTTTGCAGCAGCTGGGATATATAGCTATCTAGAGCTTCTTCTTCTACTACTAGTAGTATAAATGTTGTTGGTCAGTTGGTGGATTGGATGATGAGGTCGATGTATGATCCCCTT
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| CDS seq | ATGTCGCAGAGGAGAGTTGCAGGGCCCATGGGAGTGATGAGCAAGCAGCAGCAGGAGGCCATGGCAGAGGAGATGATGGAGCTGAGGCGAGGACCATGGACCCTCGAGGAAGACAACCTCCTCATGAACTACATTGCCTGCCATGGCGAAGGCCGCTGGAATCTCCTCGCCCGCTGCTCCGGGTTGAAGAGGACGGGCAAGAGCTGCAGGCTAAGATGGCTCAACTACCTCAAGCCTGACATAAAGCGCGGGAATCTGACGCCGGAGGAGCAGCTGCTCATTCTTGAGCTCCATTCCAGGTGGGGAAACAGGTGGTCGAGGATAGCGCAGCATCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAGGACGAGGGTGCAGAAGCAGGCCAGGCAGCTCAAGGTCGACGCCAACAGCACCGTCTTCCGCGACGCCGTCCGCTGCTATTGGATGCCTCGCCTCCTCGAGAAGATGGCCGGAGCAGCCACCGACCCCACTCCGCCGCCGCCACCGCCACTCCACCACCACGCCGCCATGGCCACCGCCTCCTCCTCGCCGTTCGACTTCGACACCCACCTGCAGCAAGCAGAAGCAGCAACGGCGTGCGTCGTCCCGAACAACGTGTACCACCACCACATCGACCCGAGCCCGAGCACGTCGACGTCGGCCGGCTCGACGGCGGCCGCGGCGGCGTTCCAGCCGCTGCCCTGCTTCTCCGAGCTGAGATGGGACCAGCAGATGCAGTCCTCCGGCGAGCTCGACGACGGCGCCGCCGGCGTGTTCGTCGACTCGGCGTCGGCGCTGGGAAGCCTCAGCCTCGACGGGCTGGACCTTGGTCCGGCCGAGTACTACTCCGACTCGACGCTCCTCGACTACCTCAACTCCAGCTGCACCGGCAGCGCCATGATGACGATGATGACCGCCTCCGGCAACGCCGGCAGCTACAACTACTGCGGCGGCGCCATGGACGGCGGCGACACGTGGAGGTCCGACGAGGTGTGCCAAGCGGCGGCGAGAAAGCTCGGCGAGTGGGGAGGAGGAATCTAG
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| Protein seq | MSQRRVAGPMGVMSKQQQEAMAEEMMELRRGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYLKPDIKRGNLTPEEQLLILELHSRWGNRWSRIAQHLPGRTDNEIKNYWRTRVQKQARQLKVDANSTVFRDAVRCYWMPRLLEKMAGAATDPTPPPPPPLHHHAAMATASSSPFDFDTHLQQAEAATACVVPNNVYHHHIDPSPSTSTSAGSTAAAAAFQPLPCFSELRWDQQMQSSGELDDGAAGVFVDSASALGSLSLDGLDLGPAEYYSDSTLLDYLNSSCTGSAMMTMMTASGNAGSYNYCGGAMDGGDTWRSDEVCQAAARKLGEWGGGI |
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| Function | Transcription factor MYB62 [UniProtKB/Swiss-Prot:Q9C9G7] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0128000 | OsNip_01t0128000-01 | Chr01 | 1549241 | 1551011 | - | RAP2018-11-26 | ||
| CDS seq | ATGTCGCAGAGGAGAGTTGCAGGGCCCATGGGAGTGATGAGCAAGCAGCAGCAGGAGGCCATGGCAGAGGAGATGATGGAGCTGAGGCGAGGACCATGGACCCTCGAGGAAGACAACCTCCTCATGAACTACATTGCCTGCCATGGCGAAGGCCGCTGGAATCTCCTCGCCCGCTGCTCCGGGTTGAAGAGGACGGGCAAGAGCTGCAGGCTAAGATGGCTCAACTACCTCAAGCCTGACATAAAGCGCGGGAATCTGACGCCGGAGGAGCAGCTGCTCATTCTTGAGCTCCATTCCAGGTGGGGAAACAGGTGGTCGAGGATAGCGCAGCATCTGCCGGGGAGGACGGACAACGAGATCAAGAACTACTGGAGGACGAGGGTGCAGAAGCAGGCCAGGCAGCTCAAGGTCGACGCCAACAGCACCGTCTTCCGCGACGCCGTCCGCTGCTATTGGATGCCTCGCCTCCTCGAGAAGATGGCCGGAGCAGCCACCGACCCCACTCCGCCGCCGCCACCGCCACTCCACCACCACGCCGCCATGGCCACCGCCTCCTCCTCGCCGTTCGACTTCGACACCCACCTGCAGCAAGCAGAAGCAGCAACGGCGTGCGTCGTCCCGAACAACGTGTACCACCACCACATCGACCCGAGCCCGAGCACGTCGACGTCGGCCGGCTCGACGGCGGCCGCGGCGGCGTTCCAGCCGCTGCCCTGCTTCTCCGAGCTGAGATGGGACCAGCAGATGCAGTCCTCCGGCGAGCTCGACGACGGCGCCGCCGGCGTGTTCGTCGACTCGGCGTCGGCGCTGGGAAGCCTCAGCCTCGACGGGCTGGACCTTGGTCCGGCCGAGTACTACTCCGACTCGACGCTCCTCGACTACCTCAACTCCAGCTGCACCGGCAGCGCCATGATGACGATGATGACCGCCTCCGGCAACGCCGGCAGCTACAACTACTGCGGCGGCGCCATGGACGGCGGCGACACGTGGAGGTCCGACGAGGTGTGCCAAGCGGCGGCGAGAAAGCTCGGCGAGTGGGGAGGAGGAATCTAG
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| Protein seq | MSQRRVAGPMGVMSKQQQEAMAEEMMELRRGPWTLEEDNLLMNYIACHGEGRWNLLARCSGLKRTGKSCRLRWLNYLKPDIKRGNLTPEEQLLILELHSRWGNRWSRIAQHLPGRTDNEIKNYWRTRVQKQARQLKVDANSTVFRDAVRCYWMPRLLEKMAGAATDPTPPPPPPLHHHAAMATASSSPFDFDTHLQQAEAATACVVPNNVYHHHIDPSPSTSTSAGSTAAAAAFQPLPCFSELRWDQQMQSSGELDDGAAGVFVDSASALGSLSLDGLDLGPAEYYSDSTLLDYLNSSCTGSAMMTMMTASGNAGSYNYCGGAMDGGDTWRSDEVCQAAARKLGEWGGGI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03720 | RBH | 0.000000 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0128000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0002050 | RBH | 0.0 | 1.794890 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001930 | RBH | 0.0 | 0.000000 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0002060 | RBH | 0.0 | 0.0 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001950 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0002020 | RBH | 0.0 | 0.0 | 0.418747 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0025900 | RBH | 0.3093935 | 0.5618895 | 0.189899 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001970 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0025300 | RBH | 0.3943345 | 3.5142095 | 0.3522805 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001860 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0002010 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0002060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0002030 | RBH | 0.0 | 0.149740 | 0.556002 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001920 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G002140 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0002010 | RBH | 0.0 | 6.750711 | 0.000000 |
