Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0123900 | OGI:01004660 | 15/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:1338241-1339139 | ||||||||
| Gene Symbol | RBBI2-2, RBBI2-2 | ||||||||||
| DNA seq | GGGTAGATCTCATCTCTTATTTATCTTTTATTCATTTATTTATGCATCATCACAAAGACAAGATGCATGTTGGCATACCAACACAGAGACATGTTCAAGCTATGCATACATACCAACACGTATATGAACACAAAGAGACATGTTCAAGCTATGCATATACCAACACGTACATGAACACAGAGACATGTTCAAGCTAGCAGAGAATACGTACGATGAGCCTCTCTGCTTGTTATACAGAGAAGTAGTTCTCTTCTTAGTTGTGCATTTCAGGTGTGCACCTGGGGCCTGGGTCCCCGGTGAAGGAGTCACGGCAGACGAAGAGAGGGCGCCACGACCACGAGTCCACCATCTCGCACTGCCCGCACGCGGCGGCGCACGACTCCACCTCGTCGGAGCAGTGGCAGATGGGAGGGAGCGACTTGGTGCAGACGGCGATGTCGCAGCACGGGCCCCACGGCCACTCCGACGACGGCGCGCACGAGGTGCCCGGGTCGTCGCCCCAGAAGACGTCGTCGCAGATGAGCGGCCGGCCGGGGAACGGCCGCCCCGGCGGATCCCGGCACGCCTCGCACTGGCGGAAGCACTGCCCGGGCTCCAGCTCGTCGTCGCACTGCCAGAACGGCGGGTTGATCCTCTCCGGCAGCCTCACGATGTTGTCGCAGCACTTCCACGGCCTCGTCCTCCTTCGCGCCGCCACTGCTCCGTCGATCGGGAGGCGTATGGTGTTGGTGGTGGTGGTCGTGGTGTCGTCCGCTGTGCTGCCGTGGGCGGCGGCGAGGCCGGCGAGGAAGAAGAACAGGATGGAAGTAGCAGCCATGGTGCGCTTCATCTTCATGGACGTCTTGCTTGCTTTGAGATGAACTGTGTTGCAGCTGTGGTGTGTTATTTATCGGGACACT
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| CDS seq | ATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAA
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| Protein seq | MKMKRTMAATSILFFFLAGLAAAHGSTADDTTTTTTNTIRLPIDGAVAARRRTRPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDPPGRPFPGRPLICDDVFWGDDPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFVCRDSFTGDPGPRCTPEMHN |
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| Function | Bowman-Birk type bran trypsin inhibitor [UniProtKB/Swiss-Prot:A2WK50] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0123900 | OsNip_01t0123900-01 | Chr01 | 1338241 | 1339098 | - | RAP2018-11-26 | ||
| CDS seq | ATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAA
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| Protein seq | MKMKRTMAATSILFFFLAGLAAAHGSTADDTTTTTTNTIRLPIDGAVAARRRTRPWKCCDNIVRLPERINPPFWQCDDELEPGQCFRQCEACRDPPGRPFPGRPLICDDVFWGDDPGTSCAPSSEWPWGPCCDIAVCTKSLPPICHCSDEVESCAAACGQCEMVDSWSWRPLFVCRDSFTGDPGPRCTPEMHN |
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0123900 | OsNip_01t0123900-02 | Chr01 | 1338241 | 1339139 | - | IsoSeq | ||
| CDS seq | ATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCAT |
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| Protein seq | MHSLNMSLCWYANMHLVFVMMH |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 51.411320 | 55.525497 | 1.842316 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0124600 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g03310 | RBH | 32.806660 | 35.179081 | 0.446657 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0123900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001760 | RBH | 11.071206 | 0.0 | 4.192834 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001640 | RBH | 3.744779 | 0.0 | 2.480259 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001760 | RBH | 57.736446 | 0.0 | 0.037669 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001680 | RBH | 4.254830 | 0.101351 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001760 | RBH | 11.935658 | 0.0 | 14.455813 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0022200 | RBH | 222.497406 | 0.076825 | 5.7000865 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001690 | RBH | 3.400814 | 0.0 | 0.366074 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0022000 | RBH | 117.2291415 | 0.0019805 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001580 | RBH | 0.889887 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001790 | SBH | 1.494374 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001800 | RBH | 1.782571 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001780 | RBH | 7.057431 | 0.0 | 0.259176 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001670 | RBH | 12.346806 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001840 | SBH | 44.930805 | 0.0 | 4.953531 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001750 | SBH | 76.036285 | 32.512402 | 3.995320 |
