Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNip_01g0115566 | OGI:01002250 | 16/16 | Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | Chr01:842002-842757 | ||||||||
| Gene Symbol | RLCK10, OsRLCK10 | ||||||||||
| DNA seq | TCACCGAAATGTCTCTGCCCTGCACTCCTTGAAAGAGTACGCAGCATCAATCGTGTAAGGAAACCGAACAGCGAATCCACCTCTCATTATTTTGACGACATCCTCGCAGCTTGGATTCTCTTCTAGCACTCTTGTGTCGTTGCCGTGCAAAGGAGTAATGGCCAGGTGCCCACACGAAGGCTCAAGATTATCAATATAACAAGAGTATATGCTGCCAATTAGCACGTAAACGAAGGAACGGCTGGTATTATTCAGGCAAGCGACAGGCCTGTACTTCTCATTGTTGTTTATTTCCTGCGAACAATTCACAAAGGCTGACCACCTACTTGAAGCAGGCTCCAGCTCGATATGGATGGTGTGGCAACCAGTATTCAGGGTTGTAGTTGGATAAGGTGGAACAATCCTCTGAGGAAGTGTGTTAGGTGAATCCGAGATGTTGGCATCGACAACCCAGAAGGTAGAATCACTGTAGTTGATGCCCGTCACAGAGTACGTTCCCTCGTAGATCTGAATCGTAGCCTTGTCATCGGTGCAAGTCAGCTCGTAGGATGTAAAACCGCATCCAGATGGGTCACCTCGCCGGCGGAAAGGAGACGACACGTTGCTAAGACGGCCGCAGGTGAACGGAAGGCAGTCATGCCGATGATGCTGATGCCGCCCACCTGCATCTGGGACGACAACTGCAAGCACAAACAATACAGAGATGACTCGCAGGGCGGTTGAGCGATGGAACGAACCAGGAATAATGATCGCCAT
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| CDS seq | ATGGCGATCATTATTCCTGGTTCGTTCCATCGCTCAACCGCCCTGCGAGTCATCTCTGTATTGTTTGTGCTTGCAGTTGTCGTCCCAGATGCAGGTGGGCGGCATCAGCATCATCGGCATGACTGCCTTCCGTTCACCTGCGGCCGTCTTAGCAACGTGTCGTCTCCTTTCCGCCGGCGAGGTGACCCATCTGGATGCGGTTTTACATCCTACGAGCTGACTTGCACCGATGACAAGGCTACGATTCAGATCTACGAGGGAACGTACTCTGTGACGGGCATCAACTACAGTGATTCTACCTTCTGGGTTGTCGATGCCAACATCTCGGATTCACCTAACACACTTCCTCAGAGGATTGTTCCACCTTATCCAACTACAACCCTGAATACTGGTTGCCACACCATCCATATCGAGCTGGAGCCTGCTTCAAGTAGGTGGTCAGCCTTTGTGAATTGTTCGCAGGAAATAAACAACAATGAGAAGTACAGGCCTGTCGCTTGCCTGAATAATACCAGCCGTTCCTTCGTTTACGTGCTAATTGGCAGCATATACTCTTGTTATATTGATAATCTTGAGCCTTCGTGTGGGCACCTGGCCATTACTCCTTTGCACGGCAACGACACAAGAGTGCTAGAAGAGAATCCAAGCTGCGAGGATGTCGTCAAAATAATGAGAGGTGGATTCGCTGTTCGGTTTCCTTACACGATTGATGCTGCGTACTCTTTCAAGGAGTGCAGGGCAGAGACATTTCGGTGA
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| Protein seq | MAIIIPGSFHRSTALRVISVLFVLAVVVPDAGGRHQHHRHDCLPFTCGRLSNVSSPFRRRGDPSGCGFTSYELTCTDDKATIQIYEGTYSVTGINYSDSTFWVVDANISDSPNTLPQRIVPPYPTTTLNTGCHTIHIELEPASSRWSAFVNCSQEINNNEKYRPVACLNNTSRSFVYVLIGSIYSCYIDNLEPSCGHLAITPLHGNDTRVLEENPSCEDVVKIMRGGFAVRFPYTIDAAYSFKECRAETFR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNip_01g0115566 | OsNip_01t0115566-00 | Chr01 | 842002 | 842757 | - | RAP2018-11-26 | ||
| CDS seq | ATGGCGATCATTATTCCTGGTTCGTTCCATCGCTCAACCGCCCTGCGAGTCATCTCTGTATTGTTTGTGCTTGCAGTTGTCGTCCCAGATGCAGGTGGGCGGCATCAGCATCATCGGCATGACTGCCTTCCGTTCACCTGCGGCCGTCTTAGCAACGTGTCGTCTCCTTTCCGCCGGCGAGGTGACCCATCTGGATGCGGTTTTACATCCTACGAGCTGACTTGCACCGATGACAAGGCTACGATTCAGATCTACGAGGGAACGTACTCTGTGACGGGCATCAACTACAGTGATTCTACCTTCTGGGTTGTCGATGCCAACATCTCGGATTCACCTAACACACTTCCTCAGAGGATTGTTCCACCTTATCCAACTACAACCCTGAATACTGGTTGCCACACCATCCATATCGAGCTGGAGCCTGCTTCAAGTAGGTGGTCAGCCTTTGTGAATTGTTCGCAGGAAATAAACAACAATGAGAAGTACAGGCCTGTCGCTTGCCTGAATAATACCAGCCGTTCCTTCGTTTACGTGCTAATTGGCAGCATATACTCTTGTTATATTGATAATCTTGAGCCTTCGTGTGGGCACCTGGCCATTACTCCTTTGCACGGCAACGACACAAGAGTGCTAGAAGAGAATCCAAGCTGCGAGGATGTCGTCAAAATAATGAGAGGTGGATTCGCTGTTCGGTTTCCTTACACGATTGATGCTGCGTACTCTTTCAAGGAGTGCAGGGCAGAGACATTTCGGTGA
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| Protein seq | MAIIIPGSFHRSTALRVISVLFVLAVVVPDAGGRHQHHRHDCLPFTCGRLSNVSSPFRRRGDPSGCGFTSYELTCTDDKATIQIYEGTYSVTGINYSDSTFWVVDANISDSPNTLPQRIVPPYPTTTLNTGCHTIHIELEPASSRWSAFVNCSQEINNNEKYRPVACLNNTSRSFVYVLIGSIYSCYIDNLEPSCGHLAITPLHGNDTRVLEENPSCEDVVKIMRGGFAVRFPYTIDAAYSFKECRAETFR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.653368 | 0.662369 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_01g0114100 | SBH | 0.327124 | 0.000000 | 1.199296 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os01g02550 | RBH | 0.158974 | 0.000000 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os01g0115566 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_01g0001100 | SBH | 0.094304 | 5.570498 | 1.005969 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_01g0001140 | SBH | 0.956421 | 0.000000 | 0.853077 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_01g0001180 | SBH | 0.326470 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_01g0001060 | SBH | 0.112602 | 0.061699 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_01g0001210 | SBH | 0.172035 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_01G0016000 | SBH | 1.6942795 | 5.724617 | 3.7314985 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_01g0001160 | SBH | 0.674845 | 0.207849 | 1.722675 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_01G0015200 | SBH | 1.617323 | 0.890693 | 1.779883 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_01g0001100 | SBH | 0.107549 | 0.055458 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_01g0001220 | SBH | 0.132781 | 0.000000 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_01g0001130 | SBH | 0.287462 | 2.850632 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_01g0001170 | SBH | 0.433281 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_01g0001130 | RBH | 0.151789 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_01G001200 | SBH | 0.000000 | 0.000000 | 0.000000 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_01g0001120 | SBH | 0.000000 | 0.000000 | 0.000000 |
