Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0021390 | OGI:12070350 | 8/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:25481355-25485770 | ||||||||
| Gene Symbol | PTR2, OsPTR2, OsNPF2.2, NPF2.2 | ||||||||||
| DNA seq | ggctttcggtgggctcgtttcagccctaagaagaattatatgggccggcccatacattcataatacagatttacaattacattcattcatccctaatgtaattaatgtagtccaattccaaactggatcgtacaagtatcatctctcttctttctgtctgtctgtctctgttgtgttcatcatggagtggacacatgcatatgcatcaagtagtatatagtaagtatgaaaagtcagcgtacgtgtgtagtagctgtcagtgtcgtcagaccgccatggccggcggcgcgtcggcgttgtgcttggagctggtctgaagaagctcaacgccgccgtggtcggcgatgttcttggacctgtaccagagcgcgcagaccacgaagtaagccaggttggcggccgacatggcgcccaccacaaggtagaagaggtcgacgcggcccttatcgatgtcctgcgccagccaccccgtcgcccgctccaccgccgtcaccatcgccccgctcgcgtagctcgccaccgccagcgccagcggcgacagcgcccccgccacgctcctcatgctctccggcgactccttgtagcacagctcgttcagcccgatcgccgcgaacgcctccgacagccccgccatcgcctgctgcggcaccatccacgcccacgacgacgacgaccctcctcccgccccgcgccgcctctgctcccccgccaccgccaccgccatcgtcgccaccgacagcgccagcccgatcccgatgcgctgcagctggctgatcccctcctcacgccccgtcacccgccgcagcgccggcaccaccgcgcggtcgtacaccggcagccacgccgtgagcgccaccatgttgaacaccaccatcgaccccgccggcacctcgaaccccgacctccccacccgccggtccgactgcatcacctggaacaccgtgtacgtgcccagctgcgtcagcatcacgtagtacacgatcgacgacgaccacaccgggatcatccgcgtaagcaccttcacctcctccacctgctgcaccgtgcacagccgccacgggttcgccgccgccgcgctcatgccgtccaccaccgcgtcctccgccgtcaccaccgcggccttgtccagccaccggaactggtccgtgtgcttgatcttggccaccagcttgctccggtgcggcgggtcgaacaggtcgtcggcaggagacgccggggcagggaggcgcctcttgcgggcggcggcgacgagcacctggacgaagctggtgaaggggctgccctcggggcggacgcggacgtagaggcgggtgcccatgaagaagagcgcgcaggagagggccatgagcgcggtgggcacggcgaggccgatggcccagttgatgttgctctggaggtagatgatgagcgtggcggacaccatcatggcgatggtgaaggtgaagtagtaccagttgaagaagctggcgatgccgcggcggcccgcggcggtggccgggtcgaactggtcggcgccgaaggcgaggttgcaggggcggatgccgccggcgccgacgacgaggaaggcgaaggaggcgaggagcgcggcgagctggcggtgcgtggggccctggcacgacgtggacgaggaggaggcacaaggtggggggtggagagatgggatggcggcggtgagggtgagcacaagcatgccgaggaaggaggcgatggaggcggcggcgagggtggcgtagcggccgaggtaggcgtcgcagaggaaggcgccgaggagaggggcgaggttggaggtaccggagaagacgttgaggagggtggcggcggcggcgctggggatgtggaagacggtggtgaggtacaccagcaggttcgccgtcgtgccgatcgtccccagcctttcgcatgtctcgttccctgatccatcgtctcgtgtcaaactccatccctttttttagagaaaagtaagaattaccccctaactattgggtgagtacgaataacacctctaaacttgaaaaccacatatcgctcacctcaaactttcaaaaccgaacaataaaccccctcccccccccccCGGGAACAATGTTGCGAGCGGTTTGGAGTTCGAATATTACACGTGGCACAGTCCACTCAGCAATATTTTTCTAAAAAAATAGCATGCCAACTTGACAGAATCCACACCCTCTTTCTCTTCCCCCTCTCCTTCAGAAACGCGTGGCCGGCCCACCGCCACCGCGCTCTTTAGAACGAGAGGGAGAAGAGAGAGAAATAGATGTGGGGATTCTGACAAGTGGGCCTGCTTTTTTTTAGAAAAAAATTACTAACTGGACTGCCACGTGTGCTATACGAACTCTAAACTGCTCGCAATAGTGCTAGGGGGTTTCTTGTCCGGTATTGAAAGTTCGGGGTGAGCGATGTCTGATTTTCGAGTTTAGTGGTGTTATTCATACTCATCCAATAGTTCAGGGGTAATTCGTACTTTTCTCTTTTTTTATTTACAAaattattatttgcaaaatggtattataagatctactagacatggcatcatcttaaaggccccatttgatatagattagtgagtggattaattaagtatcgcacattatttacttattatttggatggatgaaatattgtaataaataaacttaacAaaatactcctccgtttagtaataagtggtctaaataatgcagtagaaaaaagtttatagaaaaattgaagtgtgcagcgaataatttatttcataatccggtaaataattttgaaagaatagggagttgtcagtaattcttttatatatgtttgactagaaaaaatgtccgtgcattacaacatgtaaatatttttttaaattttattattgctatacgttttagttaggataaaatttactttaggaattctcttgatattttttcagaaaatcatgagttgcaattattagtccatatttcatctcaagttagcatgcaagtttttttaaaagatttgttatacgacaccttttatgcttccaaaaggaaacaagcttaaaaaccgaaaccgactcaaatacagatggcataccaaaataccacaaaaaacatcttcaattaaagaaaacaaacttaaaatacaacttaaatacggatatgtatttccaaaaacgaaaaaacttaaaaaccaacttaaatatggatgacataatagtagagaaatactcctctatgcaaatgataattgttttccaaggtcttaaaaactgcaccgtgcagatgataattttttgggggtgctttggaacgcatatgaaccctttccctacttctactggaattgaaacggtttcaatggggggaaagaaaagaaaaatcagtttgaaaccagtaggtggttgcaaaagcaaaacgaaaaagagagaggtgctgagattggtactaccacgctgggctgggctgagaagaggacacttccctagcgtagtgcagttgggtaactttaatgcaattgattgttggtggtgccatcaggcatgtgcagctgcagtgcacagtgcttctatcttgtctatcttctttcttgctttcttcttcttcttttcttcttctttctacctccatggctcctctccatctgcctgcttcatcggttgcctttggactaacttgcttccttgattgtataacttcaccacatttaccatctaacttctccactaagcttttattttttcattgacgtttaattgggAaaaaagagatggAaaaaaaagaggaagtgtgtactttggtgtatggatgaagcaataatgcaaatccagcgagctgaagcatatatgcgcacaaattgcgtatgaattgatagctgagatttggagccagcaactaactaaaaggaagagatctagctagtgatgtaggagactatgcacttcactaaactacaggaggtcatcatctgctatagctagctgcagccatgttggatgtccatttccatcttactttttttgtgttcaaaataaaaacatacagtacatgcatgctcaaagaagagaagagtaggatccaaaccggagagagttaaaggagaagaacagagctgagggtgaggagctaattaagagctagggaggccgggaggATatatatatatatataaccatggaggagctagaagatacagtagtacatacctatgacgtacggcatgaccttccatccatggtaccggacggcttgctcgccatggccggagatgtgctgctgcttctccggcgccagcttagtttgctcctgcgacggcgccggcggcataccttgtgcttagctagatttgtccgtgtgaataatttatgtaagattaggcctaggaaagaaagaaagaaaaaaaggatggatgaagaagaagaggtctccggccggccgggcg
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| CDS seq | atggcgagcaagccgtccggtaccatggatggaagcgccgccgccgccaccctcctcaacgtcttctccggtacctccaacctcgcccctctcctcggcgccttcctctgcgacgcctacctcggccgctacgccaccctcgccgccgcctccatcgcctccttcctcggcatgcttgtgctcaccctcaccgccgccatcccatctctccaccccccaccttgtgcctcctcctcgtccacgtcgtgccagggccccacgcaccgccagctcgccgcgctcctcgcctccttcgccttcctcgtcgtcggcgccggcggcatccgcccctgcaacctcgccttcggcgccgaccagttcgacccggccaccgccgcgggccgccgcggcatcgccagcttcttcaactggtactacttcaccttcaccatcgccatgatggtgtccgccacgctcatcatctacctccagagcaacatcaactgggccatcggcctcgccgtgcccaccgcgctcatggccctctcctgcgcgctcttcttcatgggcacccgcctctacgtccgcgtccgccccgagggcagccccttcaccagcttcgtccaggtgctcgtcgccgccgcccgcaagaggcgcctccctgccccggcgtctcctgccgacgacctgttcgacccgccgcaccggagcaagctggtggccaagatcaagcacacggaccagttccggtggctggacaaggccgcggtggtgacggcggaggacgcggtggtggacggcatgagcgcggcggcggcgaacccgtggcggctgtgcacggtgcagcaggtggaggaggtgaaggtgcttacgcggatgatcccggtgtggtcgtcgtcgatcgtgtactacgtgatgctgacgcagctgggcacgtacacggtgttccaggtgatgcagtcggaccggcgggtggggaggtcggggttcgaggtgccggcggggtcgatggtggtgttcaacatggtggcgctcacggcgtggctgccggtgtacgaccgcgcggtggtgccggcgctgcggcgggtgacggggcgtgaggaggggatcagccagctgcagcgcatcgggatcgggctggcgctgtcggtggcgacgatggcggtggcggtggcgggggagcagaggcggcgcggggcgggaggagggtcgtcgtcgtcgtgggcgtggatggtgccgcagcaggcgatggcggggctgtcggaggcgttcgcggcgatcgggctgaacgagctgtgctacaaggagtcgccggagagcatgaggagcgtggcgggggcgctgtcgccgctggcgctggcggtggcgagctacgcgagcggggcgatggtgacggcggtggagcgggcgacggggtggctggcgcaggacatcgataagggccgcgtcgacctcttctaccttgtggtgggcgccatgtcggccgccaacctggcttacttcgtggtctgcgcgctctggtacaggtccaagaacatcgccgaccacggcggcgttgagcttcttcagaccagctccaagcacaacgccgacgcgccgccggccatggcggtctga
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| Protein seq | MASKPSGTMDGSAAAATLLNVFSGTSNLAPLLGAFLCDAYLGRYATLAAASIASFLGMLVLTLTAAIPSLHPPPCASSSSTSCQGPTHRQLAALLASFAFLVVGAGGIRPCNLAFGADQFDPATAAGRRGIASFFNWYYFTFTIAMMVSATLIIYLQSNINWAIGLAVPTALMALSCALFFMGTRLYVRVRPEGSPFTSFVQVLVAAARKRRLPAPASPADDLFDPPHRSKLVAKIKHTDQFRWLDKAAVVTAEDAVVDGMSAAAANPWRLCTVQQVEEVKVLTRMIPVWSSSIVYYVMLTQLGTYTVFQVMQSDRRVGRSGFEVPAGSMVVFNMVALTAWLPVYDRAVVPALRRVTGREEGISQLQRIGIGLALSVATMAVAVAGEQRRRGAGGGSSSSWAWMVPQQAMAGLSEAFAAIGLNELCYKESPESMRSVAGALSPLALAVASYASGAMVTAVERATGWLAQDIDKGRVDLFYLVVGAMSAANLAYFVVCALWYRSKNIADHGGVELLQTSSKHNADAPPAMAV |
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| Function | Protein NRT1/ PTR FAMILY 2.11 [UniProtKB/Swiss-Prot:Q9LV10] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0021390 | OsNaBo_12g0021390.01 | Chr12 | 25481355 | 25485588 | - | NAM | ||
| CDS seq | atggcgagcaagccgtccggtaccatggatggaagcgccgccgccgccaccctcctcaacgtcttctccggtacctccaacctcgcccctctcctcggcgccttcctctgcgacgcctacctcggccgctacgccaccctcgccgccgcctccatcgcctccttcctcggcatgcttgtgctcaccctcaccgccgccatcccatctctccaccccccaccttgtgcctcctcctcgtccacgtcgtgccagggccccacgcaccgccagctcgccgcgctcctcgcctccttcgccttcctcgtcgtcggcgccggcggcatccgcccctgcaacctcgccttcggcgccgaccagttcgacccggccaccgccgcgggccgccgcggcatcgccagcttcttcaactggtactacttcaccttcaccatcgccatgatggtgtccgccacgctcatcatctacctccagagcaacatcaactgggccatcggcctcgccgtgcccaccgcgctcatggccctctcctgcgcgctcttcttcatgggcacccgcctctacgtccgcgtccgccccgagggcagccccttcaccagcttcgtccaggtgctcgtcgccgccgcccgcaagaggcgcctccctgccccggcgtctcctgccgacgacctgttcgacccgccgcaccggagcaagctggtggccaagatcaagcacacggaccagttccggtggctggacaaggccgcggtggtgacggcggaggacgcggtggtggacggcatgagcgcggcggcggcgaacccgtggcggctgtgcacggtgcagcaggtggaggaggtgaaggtgcttacgcggatgatcccggtgtggtcgtcgtcgatcgtgtactacgtgatgctgacgcagctgggcacgtacacggtgttccaggtgatgcagtcggaccggcgggtggggaggtcggggttcgaggtgccggcggggtcgatggtggtgttcaacatggtggcgctcacggcgtggctgccggtgtacgaccgcgcggtggtgccggcgctgcggcgggtgacggggcgtgaggaggggatcagccagctgcagcgcatcgggatcgggctggcgctgtcggtggcgacgatggcggtggcggtggcgggggagcagaggcggcgcggggcgggaggagggtcgtcgtcgtcgtgggcgtggatggtgccgcagcaggcgatggcggggctgtcggaggcgttcgcggcgatcgggctgaacgagctgtgctacaaggagtcgccggagagcatgaggagcgtggcgggggcgctgtcgccgctggcgctggcggtggcgagctacgcgagcggggcgatggtgacggcggtggagcgggcgacggggtggctggcgcaggacatcgataagggccgcgtcgacctcttctaccttgtggtgggcgccatgtcggccgccaacctggcttacttcgtggtctgcgcgctctggtacaggtccaagaacatcgccgaccacggcggcgttgagcttcttcagaccagctccaagcacaacgccgacgcgccgccggccatggcggtctga
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| Protein seq | MASKPSGTMDGSAAAATLLNVFSGTSNLAPLLGAFLCDAYLGRYATLAAASIASFLGMLVLTLTAAIPSLHPPPCASSSSTSCQGPTHRQLAALLASFAFLVVGAGGIRPCNLAFGADQFDPATAAGRRGIASFFNWYYFTFTIAMMVSATLIIYLQSNINWAIGLAVPTALMALSCALFFMGTRLYVRVRPEGSPFTSFVQVLVAAARKRRLPAPASPADDLFDPPHRSKLVAKIKHTDQFRWLDKAAVVTAEDAVVDGMSAAAANPWRLCTVQQVEEVKVLTRMIPVWSSSIVYYVMLTQLGTYTVFQVMQSDRRVGRSGFEVPAGSMVVFNMVALTAWLPVYDRAVVPALRRVTGREEGISQLQRIGIGLALSVATMAVAVAGEQRRRGAGGGSSSSWAWMVPQQAMAGLSEAFAAIGLNELCYKESPESMRSVAGALSPLALAVASYASGAMVTAVERATGWLAQDIDKGRVDLFYLVVGAMSAANLAYFVVCALWYRSKNIADHGGVELLQTSSKHNADAPPAMAV
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0021390 | OsNaBo_12g0021390.02 | Chr12 | 25481394 | 25485770 | - | IsoSeq | ||
| CDS seq | cccggccggccggagacctcttcttcttcatccatcctttttttctttctttctttcctaggcctaatcttacataaattattcacacggacaaatctagctaagcacaaggtatgccgccggcgccgtcgcaggagcaaactaagctggcgccggagaagcagcagcacatctccggccatggcgagcaagccgtccggtaccatggatggaaggtcatgccgtacg
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| Protein seq | PGRPETSSSSSILFFFLSFLGLILHKLFTRTNLAKHKVCRRRRRRSKLSWRRRSSSTSPAMASKPSGTMDGRSCRT |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.674109 | 0.0 | 2.220204 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0638200 | RBH | 0.256091 | 0.576024 | 2.418007 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g44100 | RBH | 0.156098 | 0.349203 | 0.477242 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0638200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0022240 | RBH | 0.224445 | 0.0 | 4.474290 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0022320 | RBH | 0.080720 | 0.0 | 1.294323 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022680 | RBH | 0.000000 | 0.0 | 3.501732 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021660 | RBH | 10.499086 | 0.0 | 6.198365 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0368600 | RBH | 8.151829 | 0.188537 | 28.245493 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0401100 | SBH | 10.373641 | 0.2146475 | 0.0791205 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021780 | RBH | 1.032452 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0022030 | RBH | 1.403181 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021880 | SBH | 10.849084 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0022000 | RBH | 2.265980 | 0.0 | 1.522580 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021680 | SBH | 0.632689 | 0.0 | 3.503530 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029880 | SBH | 6.530879 | 56.086342 | 12.939105 |
