Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0020990 | OGI:12069410 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:25196357-25199713 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgacaattgtatgttccactcgaagattctgtactctagtgaaacatctcagtcaggataagaaagatgaaattgaaagaattggatttggatccctactatcacttcatgatatcactcttgagcgaaaattgattggccgaatagcggacagatatgacccaaataTtgagtcagtcatcatccaaggaactgcagtcccaataaccccttgggatgtgcagtgtataatgggtttacgtgcagacgggctgattatcgaaccaaagccgcacatggatgacgacgactacaagtattccttcatatacaaggaaaaacaaggtatggatatttcgctacatcacttggaggaacaactaataaaggcaaaaaatgcagatgaacacttcattagaagatttgtcctcttcacaattgggttccttctatgtcctacaacaaaagcatgtcagttcacattatctagcattagtgaaggacattgaacagattagacacatcaattgggctaaagttactagagaTtttttaatcaagtctctaaatgctttgaagactggacagagaagtctcgaaggaaatgtggcattgcttcaggtatgttacgaattaattttggtctcaataatatatgcaataattttggtctcaataacatatgcaatactaTaatgtcatgcagTtttgggcatgggaacatgtacacgtggaagatgagagtttcaacctaaactacgttggcaggccaccacctttgatggcctactggaatgaaatcaatgtcaacagctggataaagtttgacaaaaagggtgccctagacataggaaaagtaagtgccaaaacctctaagctacaatatagtttattcacagttaatacataagtcttgttgctcaacaaacagctggtgctggtcatcgccgatccaagaacttgtcatgttaccgaagatgaagtacacatatgcgatgatgacaaacagcaagaagtacccaaagagctagtacatataatagatgatgaaaaacacaaagatgtaactgaagggccagtacaaataagtgacgatgaaaaaatggctgagccagtcaattcagaatgtcataattacacgcatgatagcccacatgggtttagcgacgaccaagtatatgcacaaacaagtcctgaaagcagccaaaaatcccaggttaaatttgttgccaacacagttaaataactgttatgagttactatccacgattgacatataacgttttaaattcttttgcagcctaccaatgtagatctcatcatgaatcaactcctactgatacaaaagagctgtcagttcctggacaacaaaatttcaacaaaactgatttcaattgagggtgtttgtttagaaaacaaaagggatatccaggtataacttattttatctacgataaattattcttacaactaatgcaaactttttccattggcaggaaatgaagttaaagatatgcaagccatcaaggtccaaaaaaactgacatagctgctggaccaagcaaacaccaattcaaatctgaaaatcaacaccgtgccaatgaggatgatctcaaggttacactccaaactcctattcaattctgaatatcaactatatataggcctaaaaaccatcgggtatacatactacagcaaaaatttcaggaaaaagactttccaagtgaaatgacattgcatattccccaacctgttttgagcgaccacaagaaaactgaagataatctccctcaacaggcaatattttattcatcatttccactaccttttggtgtacatattattttcaatgaaataactttacatttctaccagtaaacaacaaatgccgatgaaatccatgccataggaacagctaacttgccatacgttatccaaagtgacgatgaaagcgtggttgaaccaaaacaggtaactatctattcAaatttgataaaaaaatataatctgaacttcgtacaaacaatataattatccttgcagctctcaacaatagcaggaagggtcagacgtccagatggaagggtcatcaaaccaacacacatgtcgcaaacagaTtttatatactacaaaagaaaatttgccaataaagaacaaaaaactaaagatctaagcttgatggagcaagtaacattaagatacatctccaagtgtgaggatgacaaattactatcaagtattgcgggaataaacttattttcgcaattccttagaccacttattcaacctaaagatgcaccagcaaaatctaagtggttatcaggcagtgtaagcattttatacgtactaatcccttacaactcaactttcacaatatttacattgataatttgtattgaacaggttatagatgcatatgtacaaatcatcatggacatgcaatccgaaacgccaagggcgcaaggtacagctttccttgaaactgatgcacattgccagcaatggaagatgaatggcgaaaataaaggtacaaccagcaaaagatatcgacaacaaagagcagattctgcaatcaagaaTtttgatcatgaaatggtaacttaaaaatatcccacattactaatcttatgtccattcaacatataaatggcttccatacaatttttcttgcagatcttcctgcccctacataggaactcagaccactggtatgttgctgtcatcaatggtgcaaaggaaaaaaaacagatactactcactgcgtatggataagagcaattatgcagcggacaaagacctaaaaaatacagtatgctatacagcaatgtcaaacattgaacttcagtgctacaaacatatgcacttactatactatacttgtgtgtagatcaaagggattgacaagtatcttaactatacaaacaaagaaaatgtcagcacttcaaaatggaagaacaagAaaataacatcatggcctatttgcccaatgcaagtgcctcaacagaaggacaggtaacatgtcatcctaatgtttcatttctgcttcatgaataaaagtctcaaattgtgagttaaatcacagctggtcgtgtggcttgtatacgctgaggtgtatggagcactggaatggaaaagatttagcccctgaatatcatgcaatggtatgttacctctaaactagtgaacttagatttacatgacagaaaaatagaatggcccttctaatactatgttccttttcagaacacaactactactttcagagctaagctgccatccattctaatcaattcttcaatgaatgaggtcatcgaagtccaggatgaactcaaacgactagaagcacaggaaggacaagacaacatatctcaaatttga
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| CDS seq | atgacaattgtatgttccactcgaagattctgtactctagtgaaacatctcagtcaggataagaaagatgaaattgaaagaattggatttggatccctactatcacttcatgatatcactcttgagcgaaaattgattggccgaatagcggacagatatgacccaaataTtgagtcagtcatcatccaaggaactgcagtcccaataaccccttgggatgtgcagtgtataatgggtttacgtgcagacgggctgattatcgaaccaaagccgcacatggatgacgacgactacaagtattccttcatatacaaggaaaaacaaggtatggatatttcgctacatcacttggaggaacaactaataaaggcaaaaaatgcagatgaacacttcattagaagatttgtcctcttcacaattgggttccttctatgtcctacaacaaaagcatcattagtgaaggacattgaacagattagacacatcaattgggctaaagttactagagaTtttttaatcaagtctctaaatgctttgaagactggacagagaagtctcgaaggaaatgtggcattgcttcagTtttgggcatgggaacatgtacacgtggaagatgagagtttcaacctaaactacgttggcaggccaccacctttgatggcctactggaatgaaatcaatgtcaacagctggataaagtttgacaaaaagggtgccctagacataggaaaactggtgctggtcatcgccgatccaagaacttgtcatgttaccgaagatgaagtacacatatgcgatgatgacaaacagcaagaagtacccaaagagctagtacatataatagatgatgaaaaacacaaagatgtaactgaagggccagtacaaataagtgacgatgaaaaaatggctgagccagtcaattcagaatgtcataattacacgcatgatagcccacatgggtttagcgacgaccaagtatatgcacaaacaagtcctgaaagcagccaaaaatcccagcctaccaatgtagatctcatcatgaatcaactcctactgatacaaaagagctgtcagttcctggacaacaaaatttcaacaaaactgatttcaattgagggtgtttgtttagaaaacaaaagggatatccaggaaatgaagttaaagatatgcaagccatcaaggtccaaaaaaactgacatagctgctggaccaagcaaacaccaattcaaatctgaaaatcaacaccgtgccaatgaggatgatctcaagctctcaacaatagcaggaagggtcagacgtccagatggaagggtcatcaaaccaacacacatgtcgcaaacagaTtttatatactacaaaagaaaatttgccaataaagaacaaaaaactaaagatctaagcttgatggagcaagtaacattaagatacatctccaagtgtgaggatgacaaattactatcaagtattgcgggaataaacttattttcgcaattccttagaccacttattcaacctaaagatgcaccagcaaaatctaagtggttatcaggcagtgttatagatgcatatgtacaaatcatcatggacatgcaatccgaaacgccaagggcgcaaggtacagctttccttgaaactgatgcacattgccagcaatggaagatgaatggcgaaaataaaggtacaaccagcaaaagatatcgacaacaaagagcagattctgcaatcaagaaTtttgatcatgaaatgatcttcctgcccctacataggaactcagaccactggtatgttgctgtcatcaatgggattgacaagtatcttaactatacaaacaaagaaaatgtcagcacttcaaaatggaagaacaagAaaataacatcatggcctatttgcccaatgcaagtgcctcaacagaaggacagctggtcgtgtggcttgtatacgctgaggtgtatggagcactggaatggaaaagatttagcccctgaatatcatgcaatgaacacaactactactttcagagctaagctgccatccattctaatcaattcttcaatgaatgaggtcatcgaagtccaggatgaactcaaacgactagaagcacaggaaggacaagacaacatatctcaaatttga
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| Protein seq | MTIVCSTRRFCTLVKHLSQDKKDEIERIGFGSLLSLHDITLERKLIGRIADRYDPNIESVIIQGTAVPITPWDVQCIMGLRADGLIIEPKPHMDDDDYKYSFIYKEKQGMDISLHHLEEQLIKAKNADEHFIRRFVLFTIGFLLCPTTKASLVKDIEQIRHINWAKVTRDFLIKSLNALKTGQRSLEGNVALLQFWAWEHVHVEDESFNLNYVGRPPPLMAYWNEINVNSWIKFDKKGALDIGKLVLVIADPRTCHVTEDEVHICDDDKQQEVPKELVHIIDDEKHKDVTEGPVQISDDEKMAEPVNSECHNYTHDSPHGFSDDQVYAQTSPESSQKSQPTNVDLIMNQLLLIQKSCQFLDNKISTKLISIEGVCLENKRDIQEMKLKICKPSRSKKTDIAAGPSKHQFKSENQHRANEDDLKLSTIAGRVRRPDGRVIKPTHMSQTDFIYYKRKFANKEQKTKDLSLMEQVTLRYISKCEDDKLLSSIAGINLFSQFLRPLIQPKDAPAKSKWLSGSVIDAYVQIIMDMQSETPRAQGTAFLETDAHCQQWKMNGENKGTTSKRYRQQRADSAIKNFDHEMIFLPLHRNSDHWYVAVINGIDKYLNYTNKENVSTSKWKNKKITSWPICPMQVPQQKDSWSCGLYTLRCMEHWNGKDLAPEYHAMNTTTTFRAKLPSILINSSMNEVIEVQDELKRLEAQEGQDNISQI |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0020990 | OsNaBo_12g0020990.01 | Chr12 | 25196357 | 25199713 | + | NAM | ||
| CDS seq | atgacaattgtatgttccactcgaagattctgtactctagtgaaacatctcagtcaggataagaaagatgaaattgaaagaattggatttggatccctactatcacttcatgatatcactcttgagcgaaaattgattggccgaatagcggacagatatgacccaaataTtgagtcagtcatcatccaaggaactgcagtcccaataaccccttgggatgtgcagtgtataatgggtttacgtgcagacgggctgattatcgaaccaaagccgcacatggatgacgacgactacaagtattccttcatatacaaggaaaaacaaggtatggatatttcgctacatcacttggaggaacaactaataaaggcaaaaaatgcagatgaacacttcattagaagatttgtcctcttcacaattgggttccttctatgtcctacaacaaaagcatcattagtgaaggacattgaacagattagacacatcaattgggctaaagttactagagaTtttttaatcaagtctctaaatgctttgaagactggacagagaagtctcgaaggaaatgtggcattgcttcagTtttgggcatgggaacatgtacacgtggaagatgagagtttcaacctaaactacgttggcaggccaccacctttgatggcctactggaatgaaatcaatgtcaacagctggataaagtttgacaaaaagggtgccctagacataggaaaactggtgctggtcatcgccgatccaagaacttgtcatgttaccgaagatgaagtacacatatgcgatgatgacaaacagcaagaagtacccaaagagctagtacatataatagatgatgaaaaacacaaagatgtaactgaagggccagtacaaataagtgacgatgaaaaaatggctgagccagtcaattcagaatgtcataattacacgcatgatagcccacatgggtttagcgacgaccaagtatatgcacaaacaagtcctgaaagcagccaaaaatcccagcctaccaatgtagatctcatcatgaatcaactcctactgatacaaaagagctgtcagttcctggacaacaaaatttcaacaaaactgatttcaattgagggtgtttgtttagaaaacaaaagggatatccaggaaatgaagttaaagatatgcaagccatcaaggtccaaaaaaactgacatagctgctggaccaagcaaacaccaattcaaatctgaaaatcaacaccgtgccaatgaggatgatctcaagctctcaacaatagcaggaagggtcagacgtccagatggaagggtcatcaaaccaacacacatgtcgcaaacagaTtttatatactacaaaagaaaatttgccaataaagaacaaaaaactaaagatctaagcttgatggagcaagtaacattaagatacatctccaagtgtgaggatgacaaattactatcaagtattgcgggaataaacttattttcgcaattccttagaccacttattcaacctaaagatgcaccagcaaaatctaagtggttatcaggcagtgttatagatgcatatgtacaaatcatcatggacatgcaatccgaaacgccaagggcgcaaggtacagctttccttgaaactgatgcacattgccagcaatggaagatgaatggcgaaaataaaggtacaaccagcaaaagatatcgacaacaaagagcagattctgcaatcaagaaTtttgatcatgaaatgatcttcctgcccctacataggaactcagaccactggtatgttgctgtcatcaatgggattgacaagtatcttaactatacaaacaaagaaaatgtcagcacttcaaaatggaagaacaagAaaataacatcatggcctatttgcccaatgcaagtgcctcaacagaaggacagctggtcgtgtggcttgtatacgctgaggtgtatggagcactggaatggaaaagatttagcccctgaatatcatgcaatgaacacaactactactttcagagctaagctgccatccattctaatcaattcttcaatgaatgaggtcatcgaagtccaggatgaactcaaacgactagaagcacaggaaggacaagacaacatatctcaaatttga
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| Protein seq | MTIVCSTRRFCTLVKHLSQDKKDEIERIGFGSLLSLHDITLERKLIGRIADRYDPNIESVIIQGTAVPITPWDVQCIMGLRADGLIIEPKPHMDDDDYKYSFIYKEKQGMDISLHHLEEQLIKAKNADEHFIRRFVLFTIGFLLCPTTKASLVKDIEQIRHINWAKVTRDFLIKSLNALKTGQRSLEGNVALLQFWAWEHVHVEDESFNLNYVGRPPPLMAYWNEINVNSWIKFDKKGALDIGKLVLVIADPRTCHVTEDEVHICDDDKQQEVPKELVHIIDDEKHKDVTEGPVQISDDEKMAEPVNSECHNYTHDSPHGFSDDQVYAQTSPESSQKSQPTNVDLIMNQLLLIQKSCQFLDNKISTKLISIEGVCLENKRDIQEMKLKICKPSRSKKTDIAAGPSKHQFKSENQHRANEDDLKLSTIAGRVRRPDGRVIKPTHMSQTDFIYYKRKFANKEQKTKDLSLMEQVTLRYISKCEDDKLLSSIAGINLFSQFLRPLIQPKDAPAKSKWLSGSVIDAYVQIIMDMQSETPRAQGTAFLETDAHCQQWKMNGENKGTTSKRYRQQRADSAIKNFDHEMIFLPLHRNSDHWYVAVINGIDKYLNYTNKENVSTSKWKNKKITSWPICPMQVPQQKDSWSCGLYTLRCMEHWNGKDLAPEYHAMNTTTTFRAKLPSILINSSMNEVIEVQDELKRLEAQEGQDNISQI
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.459566 | 0.000000 | 2.078797 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0021780 | RBH | 0.372672 | 1.476023 | 7.122060 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0021860 | RBH | 0.328831 | 3.952274 | 7.025671 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022220 | RBH | 1.083867 | 0.000000 | 8.597955 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021220 | RBH | 3.487654 | 4.478197 | 9.990764 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0363100 | RBH | 0 | 0.0821075 | 0 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0395100 | RBH | 0 | 0.014956 | 0.0151135 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0021330 | SBH | 0.739325 | 0.734068 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0021570 | RBH | 0.383194 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0021460 | SBH | 3.148910 | 6.365159 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0021530 | RBH | 0.842300 | 0.0 | 0.376152 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0021740 | RBH | 0.346059 | 1.486517 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021220 | SBH | 1.888723 | 3.159424 | 7.011118 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
