Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0020980 | OGI:12069400 | 7/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:25193572-25194350 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ctaattaagaacatggatagtaagactaagcagatcgtcaatctgtgtgaactgaaacacacagacatcatccatcatgaatgggtcggcgtcgaccaagcgattccagccggttgttatcaaagccctgtcatcctgggatttcatcagtttcatcagatatgtatctattgatccatgcatagacaccatgagattgtccattgggctgctctcaatgtgcttgagtaggtacctcaagctaaaaacagtcgaaaaggtctgaaaaacaacattatttcagtacaaacaacaagtggtaaatacaaactgtactacatcaattcaatgtccataccatttTCccTttttcaacacaagtttttttcaatgtgcaatggaagagtggaatgttaggcaaattgactgcggcaatatgagcaagttgttgctgcatactgcgtgtcaacgttacgtcatttccataccaacagtacttatcgaaaccactgaaagtattgtcctataaaataaaattagtagacaacaacaaatggatgggttttttttgtcggtagagagaacaaatgcattcaaggtagtgacaaatttcacacctattgtgactgtagaacggcgcacgcttcgataaattttccttctctcaacctcttctgcacgagtttaatcaaatcctataacaccttgcatgtccAaaaataattgaaatgacagttgggttaagaaagcaaaccatcatcactgtctgagttaacgattacttcgtttgcgtcagccat
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| CDS seq | atggctgacgcaaacgaagacaatactttcagtggtttcgataagtactgttggtatggaaatgacgtaacgttgacacgcagtatgcagcaacaacttgctcatattgccgcaaccttttcgactgtttttagcttgaggtacctactcaagcacattgagagcagcccaatggacaatctcatggtgtctatgcatggatcaatagatacatatctgatgaaactgatgaaatcccaggatgacagggctttgataacaaccggctggaatcgcttggtcgacgccgacccattcatgatggatgatgtctgtgtgtttcagttcacacagattgacgatctgcttagtcttactatccatgttcttaattag |
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| Protein seq | MADANEDNTFSGFDKYCWYGNDVTLTRSMQQQLAHIAATFSTVFSLRYLLKHIESSPMDNLMVSMHGSIDTYLMKLMKSQDDRALITTGWNRLVDADPFMMDDVCVFQFTQIDDLLSLTIHVLN |
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| Function | B3 domain-containing protein Os03g0164300 [UniProtKB/Swiss-Prot:B7EIH2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0020980 | OsNaBo_12g0020980.01 | Chr12 | 25193572 | 25194350 | - | NAM | ||
| CDS seq | atggctgacgcaaacgaagacaatactttcagtggtttcgataagtactgttggtatggaaatgacgtaacgttgacacgcagtatgcagcaacaacttgctcatattgccgcaaccttttcgactgtttttagcttgaggtacctactcaagcacattgagagcagcccaatggacaatctcatggtgtctatgcatggatcaatagatacatatctgatgaaactgatgaaatcccaggatgacagggctttgataacaaccggctggaatcgcttggtcgacgccgacccattcatgatggatgatgtctgtgtgtttcagttcacacagattgacgatctgcttagtcttactatccatgttcttaattag
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| Protein seq | MADANEDNTFSGFDKYCWYGNDVTLTRSMQQQLAHIAATFSTVFSLRYLLKHIESSPMDNLMVSMHGSIDTYLMKLMKSQDDRALITTGWNRLVDADPFMMDDVCVFQFTQIDDLLSLTIHVLN |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.0 | 4.799423 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0009080 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0022230 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0021210 | RBH | 0.000000 | 0.000000 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0363000 | RBH | 0.0564285 | 0.1466095 | 7.200529 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0395000 | RBH | 0.0876175 | 0.0516655 | 3.234631 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0008670 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0008870 | SBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_Ung0075270 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G021230 | RBH | 0.000000 | 0.000000 | 2.720004 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
