Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0019200 | OGI:12065960 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:23662024-23665037 | ||||||||
| Gene Symbol | RMP3 | ||||||||||
| DNA seq | atggcgtcgagcaccgtggtgccggcggatttggtggaggagaaggcggcggcggcggcggtggaggaggaggatgcggggagttacctgcgcgccgaccaggtggatctcatgagcctggacttcgagatcgaggagaggatggCcgacaggTtccgcaagctcaacagcggcggcgtggagcgcggcgacgaggggcccaaggCcgcgtgggagatcgacctctccaagctggagatcggccacgtcgtcgagcacggcgaccacggcacgctcttccgcgggaagtactacggccaggacgtcGcaggtagaggatcggaggatctcATTttcatcgatcgatcgatcgatctatcccatcctcTttgttaaaccctaaacggctaaacctctgcatgctgcatactaattatagatgagattgtatatgcatgttctgatctggtagatgagattgtgtgaTGttgttttcttttaatagttagttacaccatgctactatatttaattggaattGgaattGggatcctatgggctatggccgtggtttttttagcaaggttgaccatgaaCattcttaaattcgacggagagttgcttcatcttgcattggaaCcctaTttgtggataaaccaataaTGgttttgtatggtGgtctatgaTggacgtcgaacatccttgaattcaacagaaaattgcttcatgaaaacaaTtaactccAattctgtctaggttatcaaattttcgtcgttgttgagaccctttgctatatatgaaagccgcatgaatGgcagtgtcatgtataTtcagTtttggttataaacttataatccctaCcttgtttatatatgtatttagattaaatgagtgagaacCatgtgcatggatttgagttacTtgcacaataTtatataattttatcatgTtttttttgcatatttattaaaaaagaaattagtgatcacagtcgtatttggagatcttgacgatgttgaagatgacatgttaTtgttaccagacgaagtagctaatCtacttctttctcatggtatgtgtagtgaaactgttggaTtggggcgcagaGggcgattcatctgaagaccaaatagctcactttagaacatcacttaaggaggtggttgcTGtttggcatgagatcaaCcatccgaatatcacaaaggtgatcatctctctgttcccagttgcagcAatccaatccttgctgtgaTtttctttgcattggcattgtcagctgtgcagaactatgatactgCTatccattaggtttcaaaaaaaaaaaaaagatactgctattcattcgtgcaCctgctctttacctgtaattaggtgatatgatatgCcttctaagggatTtcgttgttttgatccgttgcaaaattgTtgagAaaaaaatgctctgttttgtttcttgcagttcatcggcgcatcaatgggtacaacaaaccttAatattccaaaagatattccagaccacagttCcaggaagggtgcacgcactgatctgcctgagagagcatgctgtgttgtggtagaatatctcactgggggcacattgaaacagcatctcataaagcattacaggaagaacaagaagCttccatatgaagaagtggttcggcttgcattggatttggccagagggtaattcagcaagttcgctatgcttctctctcttctgaatctgatgtttatcaagcgttcgttccattgtatctcttgttgcagattgagcttcctgcactcaaaaaagattgtgcatcgggatgtcaaaagtgagaacatgctacttgacccacagctgaaccTtaagattgctgattttggtgttgCtcgtctcgttgaggctcaggatCccaaggatttgacacgcacgactggaacacttggttacatggccccagaggtaattatacacaacccacaatccagattttacagtatcctctcctgtattctgtgaattcctttctccacgtcaaattctaaaattcattagataacgtgtcAacatcatgattattgcatttgaaatcattctctcttaattatttgaaactccatcatacttcaggtgcttgatGgaaagccatacaacagaaagtgcgatgtttacagtttcggcatctgcctatgggagacatactgctgtgatatgccctaTggaccctactcagacctcagctttgcagacttctcatcgtttgttgtccataaggtatcatgaagcaaacttgtctcacctcatttcgtcatatgatcatttgcgttcttgtggtcagactttgcgaagaaactctggatcatagcagtttctcctataccctgcattgcctcatatgatcaTttgtgttCttttggtcagaatttgcgaataatcaacaaaactacacttggatcacagtagtttctcctataccctgcatttcatcatatttgatcatttatgtttgtgttgtttttggacagaaTttgcgaccggagatcccggactgctgcccgagcgcaatggcgagcatcatgcggagatgctgggacgccaacccggaggtccggcccgagatggaggaggtggtgcgcctcctcgagtCcctggacacgagcaatggcggcggcatgttgctggagaagaagaagaagaagcatCccggcggtggatgcttctgcttcttcgtaccccgcgccgcgtaggaaccatccattcacgtcaatgcttccatcTtaatcagaatcatgtgctcctcttcctgtgTAaacttgattaggcagtttaggagtattattgttggatcctggcaCcaacaaaaagcaagcgtcacgtcagtgtgtttagttgtctttgTtttttttttcttcttccacgagatagatgagaattagattagctacggtttccttgctttgagatattagcattgaagcaaggattggtaatttggatccatgaatggtgttgggatattggcattAAagcaaggattggTgaGttggat
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| CDS seq | atggcgtcgagcaccgtggtgccggcggatttggtggaggagaaggcggcggcggcggcggtggaggaggaggatgcggggagttacctgcgcgccgaccaggtggatctcatgagcctggacttcgagatcgaggagaggatggCcgacaggTtccgcaagctcaacagcggcggcgtggagcgcggcgacgaggggcccaaggCcgcgtgggagatcgacctctccaagctggagatcggccacgtcgtcgagcacggcgaccacggcacgctcttccgcgggaagtactacggccaggacgtcGcagaGggcgattcatctgaagaccaaatagctcactttagaacatcacttaaggaggtggttgcTGtttggcatgagatcaaCcatccgaatatcacaaagttcatcggcgcatcaatgggtacaacaaaccttAatattccaaaagatattccagaccacagttCcaggaagggtgcacgcactgatctgcctgagagagcatgctgtgttgtggtagaatatctcactgggggcacattgaaacagcatctcataaagcattacaggaagaacaagaagCttccatatgaagaagtggttcggcttgcattggatttggccagaggattgagcttcctgcactcaaaaaagattgtgcatcgggatgtcaaaagtgagaacatgctacttgacccacagctgaaccTtaagattgctgattttggtgttgCtcgtctcgttgaggctcaggatCccaaggatttgacacgcacgactggaacacttggttacatggccccagaggtgcttgatGgaaagccatacaacagaaagtgcgatgtttacagtttcggcatctgcctatgggagacatactgctgtgatatgccctaTggaccctactcagacctcagctttgcagacttctcatcgtttgttgtccataagaaTttgcgaccggagatcccggactgctgcccgagcgcaatggcgagcatcatgcggagatgctgggacgccaacccggaggtccggcccgagatggaggaggtggtgcgcctcctcgagtCcctggacacgagcaatggcggcggcatgttgctggagaagaagaagaagaagcatCccggcggtggatgcttctgcttcttcgtaccccgcgccgcgtag
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| Protein seq | MASSTVVPADLVEEKAAAAAVEEEDAGSYLRADQVDLMSLDFEIEERMADRFRKLNSGGVERGDEGPKAAWEIDLSKLEIGHVVEHGDHGTLFRGKYYGQDVAEGDSSEDQIAHFRTSLKEVVAVWHEINHPNITKFIGASMGTTNLNIPKDIPDHSSRKGARTDLPERACCVVVEYLTGGTLKQHLIKHYRKNKKLPYEEVVRLALDLARGLSFLHSKKIVHRDVKSENMLLDPQLNLKIADFGVARLVEAQDPKDLTRTTGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYGPYSDLSFADFSSFVVHKNLRPEIPDCCPSAMASIMRRCWDANPEVRPEMEEVVRLLESLDTSNGGGMLLEKKKKKHPGGGCFCFFVPRAA |
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| Function | Serine/threonine-protein kinase STY13 [UniProtKB/Swiss-Prot:Q9ZQ31] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0019200 | OsNaBo_12g0019200.01 | Chr12 | 23662024 | 23665037 | + | NAM | ||
| CDS seq | atggcgtcgagcaccgtggtgccggcggatttggtggaggagaaggcggcggcggcggcggtggaggaggaggatgcggggagttacctgcgcgccgaccaggtggatctcatgagcctggacttcgagatcgaggagaggatggCcgacaggTtccgcaagctcaacagcggcggcgtggagcgcggcgacgaggggcccaaggCcgcgtgggagatcgacctctccaagctggagatcggccacgtcgtcgagcacggcgaccacggcacgctcttccgcgggaagtactacggccaggacgtcGcagaGggcgattcatctgaagaccaaatagctcactttagaacatcacttaaggaggtggttgcTGtttggcatgagatcaaCcatccgaatatcacaaagttcatcggcgcatcaatgggtacaacaaaccttAatattccaaaagatattccagaccacagttCcaggaagggtgcacgcactgatctgcctgagagagcatgctgtgttgtggtagaatatctcactgggggcacattgaaacagcatctcataaagcattacaggaagaacaagaagCttccatatgaagaagtggttcggcttgcattggatttggccagaggattgagcttcctgcactcaaaaaagattgtgcatcgggatgtcaaaagtgagaacatgctacttgacccacagctgaaccTtaagattgctgattttggtgttgCtcgtctcgttgaggctcaggatCccaaggatttgacacgcacgactggaacacttggttacatggccccagaggtgcttgatGgaaagccatacaacagaaagtgcgatgtttacagtttcggcatctgcctatgggagacatactgctgtgatatgccctaTggaccctactcagacctcagctttgcagacttctcatcgtttgttgtccataagaaTttgcgaccggagatcccggactgctgcccgagcgcaatggcgagcatcatgcggagatgctgggacgccaacccggaggtccggcccgagatggaggaggtggtgcgcctcctcgagtCcctggacacgagcaatggcggcggcatgttgctggagaagaagaagaagaagcatCccggcggtggatgcttctgcttcttcgtaccccgcgccgcgtag
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| Protein seq | MASSTVVPADLVEEKAAAAAVEEEDAGSYLRADQVDLMSLDFEIEERMADRFRKLNSGGVERGDEGPKAAWEIDLSKLEIGHVVEHGDHGTLFRGKYYGQDVAEGDSSEDQIAHFRTSLKEVVAVWHEINHPNITKFIGASMGTTNLNIPKDIPDHSSRKGARTDLPERACCVVVEYLTGGTLKQHLIKHYRKNKKLPYEEVVRLALDLARGLSFLHSKKIVHRDVKSENMLLDPQLNLKIADFGVARLVEAQDPKDLTRTTGTLGYMAPEVLDGKPYNRKCDVYSFGICLWETYCCDMPYGPYSDLSFADFSSFVVHKNLRPEIPDCCPSAMASIMRRCWDANPEVRPEMEEVVRLLESLDTSNGGGMLLEKKKKKHPGGGCFCFFVPRAA
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 1.040675 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0605900 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g41260 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0605900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0020050 | RBH | 0.0 | 0.0 | 1.825417 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0020150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0020470 | RBH | 0.0 | 0.0 | 0.447363 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0019790 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0019370 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0341800 | SBH | 3.8467005 | 17.9857025 | 16.0063325 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0019250 | RBH | 0.0 | 0.0 | 0.000000 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0372600 | RBH | 0 | 0.011785 | 0.0075635 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0019500 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0019720 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0019640 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0019710 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0019870 | RBH | 0.0 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G019510 | RBH | 0.0 | 0.0 | 0.334441 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0026940 | SBH | 5.281429 | 73.529633 | 23.869387 |
