Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0016800 | OGI:12060260 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:21298285-21300570 | ||||||||
| Gene Symbol | R2R3-MYB | ||||||||||
| DNA seq | gtagtaacaatcacgtcttcttatatgttttacattgttgggacaacatatacatatgtgtcaatcgacatccatacaaaaaaaaaaaggaaaatcaaagaagaaatttactttttttctctcgtagtaacttttgaagttagaataagctgactctaatctttgttccacgagttatcaatcaatattataaaatgtgtactcctgtacgtatgtgtatatatagccacaatacaaattaatgcaaaattcactacatcttccaaatgtcctccaagctccaaaaattctcggaagtgccctcagaaaagccctgaacccaaccaacaagatctggatcctgaaactggctatgctcatgaggatgaagttgctctgactcataattactacaaaaccctttatttgctccctgcatccagtagtccccaccattcaccatctcattgtcctgcacatttgcataaaggcccccatcgtatgactctgatgtcgcgaacgagtccgacgacgacgatgtcatcactggcatcccatgagcatcgcccatggcagtggtactattatacccatggtgatcaccgagctggcttgcatcggcgaggcgaggcatccatagatatctcatagcatccttgaacctagcactgttggcatcgcagttcagctgcttggcatgcttttgcactcgggtcctccagtagttcttgatctcgttgtcggtcctccctggcaaatgttgcgctatctttgaccacctgcagataatcaacacacccccaatgggatcaaaatgtaattagaaaaaaattgatggtagagaatcacacaagAaaaaagagtacaatataagctaagttgtgtggcactagactagtggagatatatgtagagagagagaaagagagagagggagggaaggaagagagacgtgcagctttaaaactcgtgcagctttcatgcactctgtttatgtgaaagtgagaggcatcttggttgtacatgcttagctagccggcctagctagaagctttagcttgatgtatatatcaTtgtatctatctttttctccatatatatgtttgcaaatcaattaattaaaaccaataatgcatgcataataattaatattcctctgtagcgatagaagacttgtacaatatgaactgtgctagtatcttgaactattgtcaaagtatgtttttgtgtggcatccaagtgtgtgtggccacatgtatatgtgtacatatttaatacagcacgtgacatgcgacgtgtgcacacataccatgtatggtccacaattgatggCcatatatataccatcaagagctagctaatgagcctacaaattaaattacacctgatatagtgatttacatgcccacaaataaactattttaattaatcaattataattacatgcctcttttccaagcctactaatttaatttcctccaatttatttggagggtttttttttgttgtgtcaatcgaaccataaaaggtttcgaattggttcaacAgatcatgtcctaaacgttaaatatttatgagcgaagcgggtaataattaactagcgagcggaataatgggtgagttaataattaattaattaccggttgccccatcgggagtggaggtcgaggatgagcagctgctcgtcggcggtgaagttgccgcgcttcacgtcgggccggaggtagttcagccaccgcagcctgcagctcttccccgtcctcttcaacccttcatcgatcgatagatcacaaacatcaaatcgattttcatcgattCcatatataattcgaatcaaatcgacatcgaatcgattgactacaacttgatttgattagattaccggcggcgcgggcgagggagttccagcgtccctcgccgtggtcggcgatgtagttgacgagggtgaggtcctcgtcgacggtccacggccctcgccggagctccagctgcaggtccgctgccgccgcggaggcctcctcctcggcggcggcctcatcctgtagtaccgccgctggccgccgcatcatcgtcatcagctgatcggctgccgcctggtcgtcgacgtcgagctgcgccgccgtgctcctgctcctctgcgatgctgccatggccggcgcaactcagctcagctctcagctaggtcgtgtgttgcaggaggagagagaaagcagcaaaagtagctaaatggctctagcttggcttagcttagctgagaagttgtagagagagagagagagagagacaagagagatggattggtgggag
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| CDS seq | atggcagcatcgcagaggagcaggagcacggcggcgcagctcgacgtcgacgaccaggcggcagccgatcagctgatgacgatgatgcggcggccagcggcggtactacaggatgaggccgccgccgaggaggaggcctccgcggcggcagcggacctgcagctggagctccggcgagggccgtggaccgtcgacgaggacctcaccctcgtcaactacatcgccgaccacggcgagggacgctggaactccctcgcccgcgccgccgggttgaagaggacggggaagagctgcaggctgcggtggctgaactacctccggcccgacatagcgcaacatttgccagggaggaccgacaacgagatcaagaactactggaggacccgagtgcaaaagcatgccaagcagctgaactgcgatgccaacagtgctaggttcaaggatgctatgagatatctatggatgcctcgcctcgccgatgcaagccagctcggtgatcaccatgggtataatagtaccactgccatgggcgatgctcatgggatgccagtgatgacatcgtcgtcgtcggactcgttcgcgacatcagagtcatacgatgggggcctttatgcaaatgtgcaggacaatgagatggtgaatggtggggactactggatgcagggagcaaataaagggttttgtagtaattatgagtcagagcaacttcatcctcatgagcatagccagtttcaggatccagatcttgttggttgggttcagggcttttctgagggcacttccgagaatttttggagcttggaggacatttggaagatgtag
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| Protein seq | MAASQRSRSTAAQLDVDDQAAADQLMTMMRRPAAVLQDEAAAEEEASAAAADLQLELRRGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYLRPDIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRYLWMPRLADASQLGDHHGYNSTTAMGDAHGMPVMTSSSSDSFATSESYDGGLYANVQDNEMVNGGDYWMQGANKGFCSNYESEQLHPHEHSQFQDPDLVGWVQGFSEGTSENFWSLEDIWKM |
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| Function | Transcription factor JAMYB [UniProtKB/Swiss-Prot:Q2QZJ8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0016800 | OsNaBo_12g0016800.01 | Chr12 | 21298285 | 21300565 | - | NAM | ||
| CDS seq | atggcagcatcgcagaggagcaggagcacggcggcgcagctcgacgtcgacgaccaggcggcagccgatcagctgatgacgatgatgcggcggccagcggcggtactacaggatgaggccgccgccgaggaggaggcctccgcggcggcagcggacctgcagctggagctccggcgagggccgtggaccgtcgacgaggacctcaccctcgtcaactacatcgccgaccacggcgagggacgctggaactccctcgcccgcgccgccgggttgaagaggacggggaagagctgcaggctgcggtggctgaactacctccggcccgacatagcgcaacatttgccagggaggaccgacaacgagatcaagaactactggaggacccgagtgcaaaagcatgccaagcagctgaactgcgatgccaacagtgctaggttcaaggatgctatgagatatctatggatgcctcgcctcgccgatgcaagccagctcggtgatcaccatgggtataatagtaccactgccatgggcgatgctcatgggatgccagtgatgacatcgtcgtcgtcggactcgttcgcgacatcagagtcatacgatgggggcctttatgcaaatgtgcaggacaatgagatggtgaatggtggggactactggatgcagggagcaaataaagggttttgtagtaattatgagtcagagcaacttcatcctcatgagcatagccagtttcaggatccagatcttgttggttgggttcagggcttttctgagggcacttccgagaatttttggagcttggaggacatttggaagatgtag
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| Protein seq | MAASQRSRSTAAQLDVDDQAAADQLMTMMRRPAAVLQDEAAAEEEASAAAADLQLELRRGPWTVDEDLTLVNYIADHGEGRWNSLARAAGLKRTGKSCRLRWLNYLRPDIAQHLPGRTDNEIKNYWRTRVQKHAKQLNCDANSARFKDAMRYLWMPRLADASQLGDHHGYNSTTAMGDAHGMPVMTSSSSDSFATSESYDGGLYANVQDNEMVNGGDYWMQGANKGFCSNYESEQLHPHEHSQFQDPDLVGWVQGFSEGTSENFWSLEDIWKM
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0016800 | OsNaBo_12g0016800.02 | Chr12 | 21298285 | 21300570 | - | IsoSeq | ||
| CDS seq | atggtggggactactggatgcagggagcaaataaagggttttgtagtaattatgagtcagagcaacttcatcctcatgagcatagccagtttcaggatccagatcttgttggttgggttcagggcttttctgagggcacttccgagaatttttggagcttggaggacatttggaagatgtagtgaattttgcattaatttgtattgtggctatatatacacatacgtacaggagtacacattttataatatt
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| Protein seq | MVGTTGCREQIKGFVVIMSQSNFILMSIASFRIQILLVGFRAFLRALPRIFGAWRTFGRCSEFCINLYCGYIYTYVQEYTFYNI |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 6.266057 | 12.771596 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0564100 | RBH | 0.366541 | 0.856346 | 6.535742 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g37690 | RBH | 0.253225 | 0.516132 | 1.933150 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0564100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0017470 | RBH | 0.0 | 0.0 | 5.331544 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0017590 | RBH | 0.195656 | 0.0 | 3.188624 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0017960 | RBH | 0.0 | 0.0 | 12.060789 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0017280 | RBH | 0.000000 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0016860 | RBH | 0.0 | 0.0 | 10.074844 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0307100 | RBH | 0.224281 | 0.0734365 | 0.2533275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0016770 | RBH | 0.0 | 0.0 | 2.650371 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0338300 | RBH | 1.7876 | 0.744433 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0017000 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0017250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0017210 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0017210 | RBH | 0.0 | 0.0 | 4.535699 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0017370 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G017130 | RBH | 0.0 | 0.0 | 7.431929 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0024150 | RBH | 0.000000 | 3.003834 | 16.485039 |
