Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0015180 | OGI:12054490 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:19447057-19450977 | ||||||||
| Gene Symbol | SDRLK-10 | ||||||||||
| DNA seq | gttgaagggtcttggatctgggcatctggcgctagcttaccatccggggatgctttcttgggagattcgagagcccttcaacgtcttcgcgagatccgtgagttagtcctttttgcccagtctggggtgaaaataacgaacagatcaagcaaagttgctgcttaattacagacaaatagaagctaagaaactgaagtttcagctgattgtgtgtcgttttgtagaaaaaaaaaaactccttttgctaatgatggagggctgaacagtagttggcaaacggtcaaaggatgcaagatctggtcttgcagtagatgtgatcatgtgatgagtattagtgtaactattaacacatttttagtcaataatgagtgacatgagatgcaagaatgtgatattagtatattactactagcacttctttgttgtaaacttgagcacggttgcTtttttttttgttgggtggcattttagtatgtttcttttgctaatatctcactcattctagcattcgttttctacaaatataggggatggagtgatggaccatctagtgcagtaatgcagatttatgctctaaacgatttattcaacaatagcatgcagatatcgctgtccacttccaacctttcgttctgtatgttagccatcaatctttaatgtttgtctgttaagcaggtttgttctcttcgtcaatttattcttctgagttgctaacatgtaaccattccaacttgaaaaacacccccacaagaaacttcagtgcatttcctgtgaagatgtgaataaagtcaccctttttctattgcctgcagatcagatgggctgtacgaaatgggcaggagagatagggacaatttcactgattgcgaggtctgcccaagtccacgttcattgattggttaactggctgtttagcttactgaagacttgactgtgaatcatggaagaccatgtcttccaccaattagttttcgaatagtgcattgcttggctcaaatacacaacactctgttgagccttgtgcaacccaaattatcttggctcgggacagaagcaagttcagcaacatgaggcatcttccttcttgcaggttcatcacctataaggaacttcggtacattccgtgtaaagatgtgaataaagtcacccttatcacctgcagatcagatggattgtgatagcgaattaggaacaggagagaaagggacagatgcaaaggctgatcgatgggaaagtcagtttcattgactggaggtctgtataagacataagtccacttgcattgtttgtcatttggctgtttagcactactttagcttactgaagacttgaccacaagccatggaacaccaaatgttccaccaatcattttttttaaaatagtgcattgcatggtccaaaagcctcaaatacacaacattctgttgagccttgtgcaatgcaagttatcttggcccggggcagaagcaagttcagcaacatgaggcatcttcctttctgcaggttcatcactttgtctgtcatcttcttgcttagcatccctttgcttgttgcatctgttcctcaggacattctttctcctggatcttccatctccgtggaggacaactctaacatgttggtctcccccaacggattgttttcgtgcggcttttacgaggtcggtgccaatgctttcatctttgctgtctgggtaaaccaatcgattggtaaaacagttgtctggacagccgatcgggatgtgccagtgaatggcagaggatcaaggattgagctgagggatggcaacatggtgctgctggacttcaacagcaggttagtttggagtacgggcacaacctctggccaagtgcgtagcgcaaaacttcttgacacgggcaacctcgtcctgttgggtcatgacggcagccgcatatggcagagctttgattcacctactgacactcttctgccgacccagccaatcgctgctaatttgaagctggtatcaggaaagtacatgctttctgttgataataatggtagtcttgctctcacatatgatacaccggaaggccatagcaagtactggccaagaaatataaatgcgacaccatttagtggagaccaacctcaaggtcttgatatgcttggttgcatctctgcaggcaaccatatcaggtattgtgcatctgatctaggttatggagttttacggaggctgactcttgaccacgatggcaatcttcggctctatagcttgcttgaggctgatggccattggaagatttcatggattgctcttgcagattcttgtcaagtgcatggagtgtgtggaaacaatggtatatgtaggaatctaatgaatcccatttgtgcttgtcctccagggtttgtgtttgcagatgtatctgatttgagtaaaggttgcaagcccactttcaatatcagttgcgacaaggtggcacaggcgtattttgtggaaattgagaagatgagtgtttggggttataactccaattacacagcatcaacagcattcgatgtttgcaggaaaagttgtttggatgatctgcattgcgaagctttttcttaccagtacggtttgggaggatgtacactgaagagttcactctacactgggggatttactccctccgagatctcaataacatgcatgaaacttactgctgatgcggctgtgcagaacagtatcgattataaaccacacggtccgtatctttcttgtcagggcaggagtttttctacatccgctgataccaaggccttccaatggaactacttgtacatgcctattggatctatttttgcagttgaagccattctattcccgctcgcctggtgttttctgcgcaagaggaaacaggactcgatctcgagaaatgacgggtttgctctgattcgcgaccatttcaggaagttcaccttgaaggagctggtagctgccaccgcaaagttcaagcatgagattggaagaggcggttccggggtcgtttacgagggtatcttggatgatgggaagaagatagcagtgaagaagctacaagacatggtgcagggggagctggatttccagtccgagctgagcgtcatcggtaggatctaccacatgaatctcgtcaggatgtggggattctgctcggagcgcgggcacaagctcctcgtcttcgagtacgtcgagaatcgggtcactggccaagctgctgttcgacacggcgagcaccaccggagccttgctccggtgggagcagaggctccgtgttgcgctcggcgtggcgagagggctggcctaccttcaccatgagtgcctggagtgggtgatccactgcgacgtgaagccggagaacatcctcctcgacgaggagctggagcccaagctggcggactttgggctcgccaagctcctcaacagagggaaggatgtgcagatgctgtcccgcgtacaggggaccaggggctacattgcgccggagtgggcgtccaatctccccatcacgggcaaggtcgatgtgtacagcttcggcgtggtgctcctggagattgtgagggggctccgggtgtcggattggaccgtcgtcgacggagaagaagaggaggtggagatggttttcaggacaactgtcgcggtgctgaaagagaggttgagaggcgaagatcgttcatggctcccggggtttgtcgacccgaggctggacggcaacttctgccggttgcaagcggcggcaatggtggagctcgccgtcgcctgcgtcgaggaggagaggagcagaagacccaacatgaagcttgtagtggaaaagctccttaatttcttgtgataatttcttatgatcctggcaatccatagtggtgagtgtctgagcggtgaacggtgacacttctgttaaatccaaaaaaaagtggtgacacatctgccatgaa
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| CDS seq | atgctttcttgggagattcgagagcccttcaacgtcttcgcgagatccttttcgaatagtgcattgcttggctcaaatacacaacactctgttgagccttgtgcaacccaaattatcttggctcgggacagaagcaagttcagcaacatgaggcatcttccttcttgcaggttcatcacctataaggaacttcgtgcattgcatggtccaaaagcctcaaatacacaacattctgttgagccttgtgcaatgcaagttatcttggcccggggcagaagcaagttcagcaacatgaggcatcttcctttctgcaggttcatcactttgtctgtcatcttcttgcttagcatccctttgcttgttgcatctgttcctcaggacattctttctcctggatcttccatctccgtggaggacaactctaacatgttggtctcccccaacggattgttttcgtgcggcttttacgaggtcggtgccaatgctttcatctttgctgtctgggtaaaccaatcgattggtaaaacagttgtctggacagccgatcgggatgtgccagtgaatggcagaggatcaaggattgagctgagggatggcaacatggtgctgctggacttcaacagcaggttagtttggagtacgggcacaacctctggccaagtgcgtagcgcaaaacttcttgacacgggcaacctcgtcctgttgggtcatgacggcagccgcatatggcagagctttgattcacctactgacactcttctgccgacccagccaatcgctgctaatttgaagctggtatcaggaaagtacatgctttctgttgataataatggtagtcttgctctcacatatgatacaccggaaggccatagcaagtactggccaagaaatataaatgcgacaccatttagtggagaccaacctcaaggtcttgatatgcttggttgcatctctgcaggcaaccatatcaggtattgtgcatctgatctaggttatggagttttacggaggctgactcttgaccacgatggcaatcttcggctctatagcttgcttgaggctgatggccattggaagatttcatggattgctcttgcagattcttgtcaagtgcatggagtgtgtggaaacaatggtatatgtaggaatctaatgaatcccatttgtgcttgtcctccagggtttgtgtttgcagatgtatctgatttgagtaaaggttgcaagcccactttcaatatcagttgcgacaaggtggcacaggcgtattttgtggaaattgagaagatgagtgtttggggttataactccaattacacagcatcaacagcattcgatgtttgcaggaaaagttgtttggatgatctgcattgcgaagctttttcttaccagtacggtttgggaggatgtacactgaagagttcactctacactgggggatttactccctccgagatctcaataacatgcatgaaacttactgctgatgcggctgtgcagaacagtatcgattataaaccacacggtccgtatctttcttgtcagggcaggagtttttctacatccgctgataccaaggccttccaatggaactacttgtacatgcctattggatctatttttgcagttgaagccattctattcccgctcgcctggtgttttctgcgcaagaggaaacaggactcgatctcgagaaatgacgggtttgctctgattcgcgaccatttcaggaagttcaccttgaaggagctggtagctgccaccgcaaagttcaagcatgagattggaagaggcggttccggggtcgtttacgagggtatcttggatgatgggaagaagatagcagtgaagaagctacaagacatggtgcagggggagctggatttccagtccgagctgagcgtcatcggtaggatctaccacatgaatctcgtcaggatgtggggattctgctcggagcgcgggcacaagctcctcgtcttcgagtacgtcgagaatcggctgctgttcgacacggcgagcaccaccggagccttgctccggtgggagcagaggctccgtgttgcgctcggcgtggcgagagggctggcctaccttcaccatgagtgcctggagtgggtgatccactgcgacgtgaagccggagaacatcctcctcgacgaggagctggagcccaagctggcggactttgggctcgccaagctcctcaacagagggaaggatgtgcagatgctgtcccgcgtacaggggaccaggggctacattgcgccggagtgggcgtccaatctccccatcacgggcaaggtcgatgtgtacagcttcggcgtggtgctcctggagattgtgagggggctccgggtgtcggattggaccgtcgtcgacggagaagaagaggaggtggagatggttttcaggacaactgtcgcggtgctgaaagagaggttgagaggcgaagatcgttcatggctcccggggtttgtcgacccgaggctggacggcaacttctgccggttgcaagcggcggcaatggtggagctcgccgtcgcctgcgtcgaggaggagaggagcagaagacccaacatgaagcttgtagtggaaaagctccttaatttcttgtga
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| Protein seq | MLSWEIREPFNVFARSFSNSALLGSNTQHSVEPCATQIILARDRSKFSNMRHLPSCRFITYKELRALHGPKASNTQHSVEPCAMQVILARGRSKFSNMRHLPFCRFITLSVIFLLSIPLLVASVPQDILSPGSSISVEDNSNMLVSPNGLFSCGFYEVGANAFIFAVWVNQSIGKTVVWTADRDVPVNGRGSRIELRDGNMVLLDFNSRLVWSTGTTSGQVRSAKLLDTGNLVLLGHDGSRIWQSFDSPTDTLLPTQPIAANLKLVSGKYMLSVDNNGSLALTYDTPEGHSKYWPRNINATPFSGDQPQGLDMLGCISAGNHIRYCASDLGYGVLRRLTLDHDGNLRLYSLLEADGHWKISWIALADSCQVHGVCGNNGICRNLMNPICACPPGFVFADVSDLSKGCKPTFNISCDKVAQAYFVEIEKMSVWGYNSNYTASTAFDVCRKSCLDDLHCEAFSYQYGLGGCTLKSSLYTGGFTPSEISITCMKLTADAAVQNSIDYKPHGPYLSCQGRSFSTSADTKAFQWNYLYMPIGSIFAVEAILFPLAWCFLRKRKQDSISRNDGFALIRDHFRKFTLKELVAATAKFKHEIGRGGSGVVYEGILDDGKKIAVKKLQDMVQGELDFQSELSVIGRIYHMNLVRMWGFCSERGHKLLVFEYVENRLLFDTASTTGALLRWEQRLRVALGVARGLAYLHHECLEWVIHCDVKPENILLDEELEPKLADFGLAKLLNRGKDVQMLSRVQGTRGYIAPEWASNLPITGKVDVYSFGVVLLEIVRGLRVSDWTVVDGEEEEVEMVFRTTVAVLKERLRGEDRSWLPGFVDPRLDGNFCRLQAAAMVELAVACVEEERSRRPNMKLVVEKLLNFL |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0015180 | OsNaBo_12g0015180.01 | Chr12 | 19447057 | 19450977 | + | NAM | ||
| CDS seq | atgctttcttgggagattcgagagcccttcaacgtcttcgcgagatccttttcgaatagtgcattgcttggctcaaatacacaacactctgttgagccttgtgcaacccaaattatcttggctcgggacagaagcaagttcagcaacatgaggcatcttccttcttgcaggttcatcacctataaggaacttcgtgcattgcatggtccaaaagcctcaaatacacaacattctgttgagccttgtgcaatgcaagttatcttggcccggggcagaagcaagttcagcaacatgaggcatcttcctttctgcaggttcatcactttgtctgtcatcttcttgcttagcatccctttgcttgttgcatctgttcctcaggacattctttctcctggatcttccatctccgtggaggacaactctaacatgttggtctcccccaacggattgttttcgtgcggcttttacgaggtcggtgccaatgctttcatctttgctgtctgggtaaaccaatcgattggtaaaacagttgtctggacagccgatcgggatgtgccagtgaatggcagaggatcaaggattgagctgagggatggcaacatggtgctgctggacttcaacagcaggttagtttggagtacgggcacaacctctggccaagtgcgtagcgcaaaacttcttgacacgggcaacctcgtcctgttgggtcatgacggcagccgcatatggcagagctttgattcacctactgacactcttctgccgacccagccaatcgctgctaatttgaagctggtatcaggaaagtacatgctttctgttgataataatggtagtcttgctctcacatatgatacaccggaaggccatagcaagtactggccaagaaatataaatgcgacaccatttagtggagaccaacctcaaggtcttgatatgcttggttgcatctctgcaggcaaccatatcaggtattgtgcatctgatctaggttatggagttttacggaggctgactcttgaccacgatggcaatcttcggctctatagcttgcttgaggctgatggccattggaagatttcatggattgctcttgcagattcttgtcaagtgcatggagtgtgtggaaacaatggtatatgtaggaatctaatgaatcccatttgtgcttgtcctccagggtttgtgtttgcagatgtatctgatttgagtaaaggttgcaagcccactttcaatatcagttgcgacaaggtggcacaggcgtattttgtggaaattgagaagatgagtgtttggggttataactccaattacacagcatcaacagcattcgatgtttgcaggaaaagttgtttggatgatctgcattgcgaagctttttcttaccagtacggtttgggaggatgtacactgaagagttcactctacactgggggatttactccctccgagatctcaataacatgcatgaaacttactgctgatgcggctgtgcagaacagtatcgattataaaccacacggtccgtatctttcttgtcagggcaggagtttttctacatccgctgataccaaggccttccaatggaactacttgtacatgcctattggatctatttttgcagttgaagccattctattcccgctcgcctggtgttttctgcgcaagaggaaacaggactcgatctcgagaaatgacgggtttgctctgattcgcgaccatttcaggaagttcaccttgaaggagctggtagctgccaccgcaaagttcaagcatgagattggaagaggcggttccggggtcgtttacgagggtatcttggatgatgggaagaagatagcagtgaagaagctacaagacatggtgcagggggagctggatttccagtccgagctgagcgtcatcggtaggatctaccacatgaatctcgtcaggatgtggggattctgctcggagcgcgggcacaagctcctcgtcttcgagtacgtcgagaatcggctgctgttcgacacggcgagcaccaccggagccttgctccggtgggagcagaggctccgtgttgcgctcggcgtggcgagagggctggcctaccttcaccatgagtgcctggagtgggtgatccactgcgacgtgaagccggagaacatcctcctcgacgaggagctggagcccaagctggcggactttgggctcgccaagctcctcaacagagggaaggatgtgcagatgctgtcccgcgtacaggggaccaggggctacattgcgccggagtgggcgtccaatctccccatcacgggcaaggtcgatgtgtacagcttcggcgtggtgctcctggagattgtgagggggctccgggtgtcggattggaccgtcgtcgacggagaagaagaggaggtggagatggttttcaggacaactgtcgcggtgctgaaagagaggttgagaggcgaagatcgttcatggctcccggggtttgtcgacccgaggctggacggcaacttctgccggttgcaagcggcggcaatggtggagctcgccgtcgcctgcgtcgaggaggagaggagcagaagacccaacatgaagcttgtagtggaaaagctccttaatttcttgtga
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| Protein seq | MLSWEIREPFNVFARSFSNSALLGSNTQHSVEPCATQIILARDRSKFSNMRHLPSCRFITYKELRALHGPKASNTQHSVEPCAMQVILARGRSKFSNMRHLPFCRFITLSVIFLLSIPLLVASVPQDILSPGSSISVEDNSNMLVSPNGLFSCGFYEVGANAFIFAVWVNQSIGKTVVWTADRDVPVNGRGSRIELRDGNMVLLDFNSRLVWSTGTTSGQVRSAKLLDTGNLVLLGHDGSRIWQSFDSPTDTLLPTQPIAANLKLVSGKYMLSVDNNGSLALTYDTPEGHSKYWPRNINATPFSGDQPQGLDMLGCISAGNHIRYCASDLGYGVLRRLTLDHDGNLRLYSLLEADGHWKISWIALADSCQVHGVCGNNGICRNLMNPICACPPGFVFADVSDLSKGCKPTFNISCDKVAQAYFVEIEKMSVWGYNSNYTASTAFDVCRKSCLDDLHCEAFSYQYGLGGCTLKSSLYTGGFTPSEISITCMKLTADAAVQNSIDYKPHGPYLSCQGRSFSTSADTKAFQWNYLYMPIGSIFAVEAILFPLAWCFLRKRKQDSISRNDGFALIRDHFRKFTLKELVAATAKFKHEIGRGGSGVVYEGILDDGKKIAVKKLQDMVQGELDFQSELSVIGRIYHMNLVRMWGFCSERGHKLLVFEYVENRLLFDTASTTGALLRWEQRLRVALGVARGLAYLHHECLEWVIHCDVKPENILLDEELEPKLADFGLAKLLNRGKDVQMLSRVQGTRGYIAPEWASNLPITGKVDVYSFGVVLLEIVRGLRVSDWTVVDGEEEEVEMVFRTTVAVLKERLRGEDRSWLPGFVDPRLDGNFCRLQAAAMVELAVACVEEERSRRPNMKLVVEKLLNFL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 5.466559 | 0.112448 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0527700 | RBH | 0.182811 | 0.0 | 0.687971 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g34320 | RBH | 0.101197 | 0.0 | 0.148879 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0527700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0015440 | RBH | 0.0 | 1.642195 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0015580 | RBH | 0.0 | 0.0 | 0.189634 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0015940 | RBH | 0.0 | 0.0 | 2.490088 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0015260 | RBH | 0.025126 | 0.020204 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0014830 | RBH | 0.0 | 0.000000 | 2.279457 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0272100 | RBH | 0.3052665 | 3.544922 | 3.7927195 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0014980 | RBH | 0.043388 | 0.071927 | 0.187002 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0303300 | RBH | 0.552315 | 1.454447 | 10.2255645 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0015200 | RBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0015370 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0015460 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0015220 | RBH | 0.075977 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0015390 | RBH | 0.000000 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G015460 | RBH | 0.0 | 0.761539 | 0.432012 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
