Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0006410 | OGI:12013990 | 12/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:5165776-5169096 | ||||||||
| Gene Symbol | Orysa;CKL8, OsSTA277, Orysa;CKL1, OsSTA287 | ||||||||||
| DNA seq | atgatttcttgtcaagtgcagatatttggaagaaactctgtcaaaattggtctcaatttgatccactcattcaagaaggcatcttatgtgcttatgggctgcctttgctccaaaggcgcaaaagatgataccgatgccacttctgagaacaaaacaccatcgaggaattctgctgcagcaagtgctaagacagcaaccggtacgaatgatggcaactcagctgtgattgatggacagctgaaagaaaatgcaagtaaattgcaattgggtgatggagagaaggcgatcgtagctctagatgttaggaccggtagtggtaacaatgcagaactgaaggggctctcaggtgagcaagtagctgctgggtggcctgcttggctcgcaaatgtggcaccaaaagcagtagaaggctgggtgcctcggcgagccgattcatttgagaaattagacaaggtaaatatactgattcgatgacaccagatatatatccttcatttcttgagatacaaattactctaaaaatcgaatgacttttttgagttgcagattggacagggaacttatagtattgtatacaaagctcgggatcttgaaacaggaaacattgttgcactaaaaaaggtgcggtttgtcaacatggaccctgagagcgtgcgttttatggctagagaaatcaaaatccttaggacactggatcatccaaatgtcataaagcttcaagggattgtaacatctcgcgtatcgcaaagcctgtatcttgtcttcgaatacatggaacatgacctttctggtctcattgcaactcctggcctcaagccctctgagccacaggtggttgttatgcttctcttacattgattttttagaaaattcatcttacattgatatcgtttaagaaaattggatgaactaaaatgattaaacatgaatatcagataaagtgcttcgttcagcagctgcttcatggccttgatcattgccacaaaaatggagttcttcatagagacatcaaaggctcaaaccttttgattgataacaatggagtgctgaaaattgccgactttggactggcaatatcttatgatcccaagaatccacaaccgctgacaagccgtgttgtgacattgtggtacagaccaccagaacttttgctcggtgcaacagaatatggtgtggctgttgatatgtggagcacagggtgcattgtggcagaactctttgctggaaaaccaatcatgccaggaagaactgaggtatttcttgttttgccttgtggaattccaggaaaaacatttgatttttgaaagatatgatttatgtgtactagtcaaaacctcatctgcctttttgcaacaatgtcatactaggtggagcaaattcacaagatttttaagctctgtgggtcacccatggatgattattgcaagaaatcaaaagtgccagagacagcaatgttcaagcctcagcatcagtataggcggtgtgttgctgagactttcaaagttttgcctacttcagctgttgttctcatagactccttgctttcattagacccagaagctcgaggaacagctgcctcagctcttcaaagtgatgtgagtttcaggcttcagtgcatatcttctgtttagtgtgggacatagctttgcagagcctatccaaaagcctagcatgctgttctcctaaaaaaaaagcctaacatgctgcaaatgtagttgaaacatgaaactaaaattctcttagcagtttgtgaaatcaatgaatgaccaaatctgtgttccatcttgtgtgaacattatgcatttataatactttgcttgtaggaatgccttcagatttgtagcactaataacatatctcaaaccaatttcagtttttcacaaaagagccatttgcatgcgacccatcaagcctgccaaaacttccaccaagcaaggagtatgatgttagactgaggcaagaggaagccaggaggtacactttgccaacatagccaaaaaccttgtgacttgtgaagctcaatgtggtgccaacacctgacttcttgttcttgcaggcaaaaaaccgcagctcttgccggacaaggagctgaatctgtcaggccagaaaatgagaatcgtgtaacgaatcatactattagtggcgttaatggtgaattgaaggtgggtataagtgactaacccaaattactgcccaagtttcaatttactcgatcattttaaacataaatatcagaacatttggttgctttatggtatttttcaccgcgccatgtttgttctatggttctaaacatctttttgcaaactcaatgcttcagttttcttttaacaaatttcaaaacatttatatttttcaaaagttcatctcaccaactctgcctgacatgcagcaacaaacacacaccagctcaaagagcaacagcgaggcgttcaaccaagaggacagtgttccagggtttagggtggaatcacgggaacgtccaactgcggtgcagctccctgggtacagttccacatggaacaacatggagggcgacaacgaccagcgaacagtacctggtcgcggttgctgctcagtgcgcgtcgcgaatccttgtggcataaggaagaaggggtcatcacactcgctcataccacagtttggtgcgaccgatttgaggagcactgttgaagctactgatcataacgactcaccagacaggcatgatgagaacaagaacccagaagtcaaggacgccatggtaagcatagctttgctgctgctagagcaaatactgatgaactcctgcaaatctgcacgaggatAaaaagattgtataccatgattttgttttacctcgcatttcttgtgcatttgccgttgtgatcagaaccatgggaggaagtacagaaggatccaccactcaggaccattgatgccgccaggagggaacgttgaggacatgctcaaggagcacgagaggcagatccaagaagccgttcgcaaggcgcgtgtcagcaagccagacaggtagcttaagtagttggaaggtgccttggaattctgagaagatggaccagagttcagaggttgcaacctcctatcttctcctgcaatttcaggctgctgcaaaagcccatacgtagagttttagcttgtaacaatgtgttatcagataggatatgatcaccgtgtaagattgaagagcatgctggatttatagaaattttcccttcatagcagtacctgaatttaagagtttttgtgaggttttcatcagttggattgtgaatttttccttatttaacctggagccctgggctcctggagcattagaaa
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| CDS seq | atgatttcttgtcaagtgcagatatttggaagaaactctgtcaaaattggtctcaatttgatccactcattcaagaaggcatcttatgtgcttatgggctgcctttgctccaaaggcgcaaaagatgataccgatgccacttctgagaacaaaacaccatcgaggaattctgctgcagcaagtgctaagacagcaaccggtacgaatgatggcaactcagctgtgattgatggacagctgaaagaaaatgcaaggattgtaacatctcgcgtatcgcaaagcctgtatcttgtcttcgaatacatggaacatgacctttctggtctcattgcaactcctggcctcaagccctctgagccacagataaagtgcttcgttcagcagctgcttcatggccttgatcattgccacaaaaatggagttcttcatagagacatcaaaggctcaaaccttttgattgataacaatggagtgctgaaaattgccgactttggactggcaatatcttatgatcccaagaatccacaaccgctgacaagccgtgttgtgacattgtggtacagaccaccagaacttttgctcggtgcaacagaatatggtgtggctgttgatatgtggagcacagggtgcattgtggcagaactctttgctggaaaaccaatcatgccaggaagaactgaggtggagcaaattcacaagatttttaagctctgtgggtcacccatggatgattattgcaagaaatcaaaagtgccagagacagcaatgttcaagcctcagcatcagtataggcggtgtgttgctgagactttcaaagttttgcctacttcagctgttgttctcatagactccttgctttcattagacccagaagctcgaggaacagctgcctcagctcttcaaagtgattttttcacaaaagagccatttgcatgcgacccatcaagcctgccaaaacttccaccaagcaaggagtatgatgttagactgaggcaagaggaagccaggaggcaaaaaaccgcagctcttgccggacaaggagctgaatctgtcaggccagaaaatgagaatcgtgtaacgaatcatactattagtggcgttaatggtgaattgaagcaacaaacacacaccagctcaaagagcaacagcgaggcgttcaaccaagaggacagtgttccagggtttagggtggaatcacgggaacgtccaactgcggtgcagctccctgggtacagttccacatggaacaacatggagggcgacaacgaccagcgaacagtacctggtcgcggttgctgctcagtgcgcgtcgcgaatccttgtggcataaggaagaaggggtcatcacactcgctcataccacagtttggtgcgaccgatttgaggagcactgttgaagctactgatcataacgactcaccagacaggcatgatgagaacaagaacccagaagtcaaggacgccatgaaccatgggaggaagtacagaaggatccaccactcaggaccattgatgccgccaggagggaacgttgaggacatgctcaaggagcacgagaggcagatccaagaagccgttcgcaaggcgcgtgtcagcaagccagacaggtag
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| Protein seq | MISCQVQIFGRNSVKIGLNLIHSFKKASYVLMGCLCSKGAKDDTDATSENKTPSRNSAAASAKTATGTNDGNSAVIDGQLKENARIVTSRVSQSLYLVFEYMEHDLSGLIATPGLKPSEPQIKCFVQQLLHGLDHCHKNGVLHRDIKGSNLLIDNNGVLKIADFGLAISYDPKNPQPLTSRVVTLWYRPPELLLGATEYGVAVDMWSTGCIVAELFAGKPIMPGRTEVEQIHKIFKLCGSPMDDYCKKSKVPETAMFKPQHQYRRCVAETFKVLPTSAVVLIDSLLSLDPEARGTAASALQSDFFTKEPFACDPSSLPKLPPSKEYDVRLRQEEARRQKTAALAGQGAESVRPENENRVTNHTISGVNGELKQQTHTSSKSNSEAFNQEDSVPGFRVESRERPTAVQLPGYSSTWNNMEGDNDQRTVPGRGCCSVRVANPCGIRKKGSSHSLIPQFGATDLRSTVEATDHNDSPDRHDENKNPEVKDAMNHGRKYRRIHHSGPLMPPGGNVEDMLKEHERQIQEAVRKARVSKPDR |
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| Function | Probable serine/threonine-protein kinase At1g09600 [UniProtKB/Swiss-Prot:F4I114] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0006410 | OsNaBo_12g0006410.01 | Chr12 | 5165776 | 5169096 | + | NAM | ||
| CDS seq | atgatttcttgtcaagtgcagatatttggaagaaactctgtcaaaattggtctcaatttgatccactcattcaagaaggcatcttatgtgcttatgggctgcctttgctccaaaggcgcaaaagatgataccgatgccacttctgagaacaaaacaccatcgaggaattctgctgcagcaagtgctaagacagcaaccggtacgaatgatggcaactcagctgtgattgatggacagctgaaagaaaatgcaaggattgtaacatctcgcgtatcgcaaagcctgtatcttgtcttcgaatacatggaacatgacctttctggtctcattgcaactcctggcctcaagccctctgagccacagataaagtgcttcgttcagcagctgcttcatggccttgatcattgccacaaaaatggagttcttcatagagacatcaaaggctcaaaccttttgattgataacaatggagtgctgaaaattgccgactttggactggcaatatcttatgatcccaagaatccacaaccgctgacaagccgtgttgtgacattgtggtacagaccaccagaacttttgctcggtgcaacagaatatggtgtggctgttgatatgtggagcacagggtgcattgtggcagaactctttgctggaaaaccaatcatgccaggaagaactgaggtggagcaaattcacaagatttttaagctctgtgggtcacccatggatgattattgcaagaaatcaaaagtgccagagacagcaatgttcaagcctcagcatcagtataggcggtgtgttgctgagactttcaaagttttgcctacttcagctgttgttctcatagactccttgctttcattagacccagaagctcgaggaacagctgcctcagctcttcaaagtgattttttcacaaaagagccatttgcatgcgacccatcaagcctgccaaaacttccaccaagcaaggagtatgatgttagactgaggcaagaggaagccaggaggcaaaaaaccgcagctcttgccggacaaggagctgaatctgtcaggccagaaaatgagaatcgtgtaacgaatcatactattagtggcgttaatggtgaattgaagcaacaaacacacaccagctcaaagagcaacagcgaggcgttcaaccaagaggacagtgttccagggtttagggtggaatcacgggaacgtccaactgcggtgcagctccctgggtacagttccacatggaacaacatggagggcgacaacgaccagcgaacagtacctggtcgcggttgctgctcagtgcgcgtcgcgaatccttgtggcataaggaagaaggggtcatcacactcgctcataccacagtttggtgcgaccgatttgaggagcactgttgaagctactgatcataacgactcaccagacaggcatgatgagaacaagaacccagaagtcaaggacgccatgaaccatgggaggaagtacagaaggatccaccactcaggaccattgatgccgccaggagggaacgttgaggacatgctcaaggagcacgagaggcagatccaagaagccgttcgcaaggcgcgtgtcagcaagccagacaggtag
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| Protein seq | MISCQVQIFGRNSVKIGLNLIHSFKKASYVLMGCLCSKGAKDDTDATSENKTPSRNSAAASAKTATGTNDGNSAVIDGQLKENARIVTSRVSQSLYLVFEYMEHDLSGLIATPGLKPSEPQIKCFVQQLLHGLDHCHKNGVLHRDIKGSNLLIDNNGVLKIADFGLAISYDPKNPQPLTSRVVTLWYRPPELLLGATEYGVAVDMWSTGCIVAELFAGKPIMPGRTEVEQIHKIFKLCGSPMDDYCKKSKVPETAMFKPQHQYRRCVAETFKVLPTSAVVLIDSLLSLDPEARGTAASALQSDFFTKEPFACDPSSLPKLPPSKEYDVRLRQEEARRQKTAALAGQGAESVRPENENRVTNHTISGVNGELKQQTHTSSKSNSEAFNQEDSVPGFRVESRERPTAVQLPGYSSTWNNMEGDNDQRTVPGRGCCSVRVANPCGIRKKGSSHSLIPQFGATDLRSTVEATDHNDSPDRHDENKNPEVKDAMNHGRKYRRIHHSGPLMPPGGNVEDMLKEHERQIQEAVRKARVSKPDR
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.985902 | 0.0 | 7.484349 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0203000 | RBH | 1.618088 | 2.606627 | 0.675566 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g10190 | RBH | 1.102603 | 1.709921 | 0.173576 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0203000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0006420 | RBH | 0.220255 | 1.055562 | 2.755285 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0006490 | RBH | 0.281670 | 0.300223 | 2.661693 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0006490 | RBH | 1.573695 | 0.0 | 4.421052 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0006400 | RBH | 0.413153 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0006390 | RBH | 15.110706 | 4.678991 | 15.416443 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0080400 | RBH | 4.803342 | 3.8701715 | 2.1550355 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0006360 | SBH | 0.704809 | 0.000000 | 2.333386 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0086100 | RBH | 4.859437 | 6.4343505 | 8.962588 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0006270 | RBH | 0.171544 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0006520 | RBH | 0.826941 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0006380 | RBH | 12.120399 | 3.295535 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0006390 | SBH | 1.186066 | 0.0 | 1.172717 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0006340 | RBH | 0.568653 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G006260 | RBH | 0.776637 | 0.0 | 1.227908 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008550 | RBH | 0.191246 | 0.0 | 15.408472 |
