Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0004290 | OGI:12007960 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:3096656-3103276 | ||||||||
| Gene Symbol | EXO70A4, OsEXO70A4, OsExo70A4, OrysaA4_Exo70 | ||||||||||
| DNA seq | aacacaaaatggatctgtaaattataaataaaaaagggaactgatattacctccaaaacagagacaatttcataaaataaaaaactataacagcgctaagtgagtaatgccttctctagcgtaacctggaaggatagccagtcaaaaataatgaaaaaacgttggatcttgccagaatggcatcatatggagttacaattatgctatttaagtaatttagcatcacatatttgatgaaggaaaataaagttagttgttgtagaatttcttgttggaagttgtcctgcagaacttattagcagtgctcttccctttctccagctttgatgtttatcgcttttgttcaccaaattgctgtccatcaaaaaactcacccagagcctgatctatattctctggggagtatctgatatacttatttgggttcttcccatgttcaacgagatttctggaagtcgaaagagttgtaaagtcatataacaaaaacaatgggtcgaaagagttgtaaggtcatataacaaaaacaatgggttgatgggcagaaattcagccagacatggaggagaaaatatagatagggagccattttaccaccaaggtcctactcctatcacaggttaatgcacataaataaagatcagaaatgaaaagaaaaggtagcacaaagaacaagagccagtgatgattgggctctcccacaaatggtggtgtacgcaaaaaatgggcatatggcgtatgcccatttcattatgaacggttaatctgtaaccgggtaactaaatagtcatatgccaggaaagaagaaaaattctaaccaacatacccaaaacgtttgatgaaagaccgataggctggcaagagaacttcagcaacagcaagtctcagagattctcgcaattcttgatcaggtatagtccattgagtttgcttagcatgaagctcttcaaattgcatattgaaggacttaaatctggcaagagaagagcataaacttttgtgacctttgttgtttgttacttattcaaaacattgaacaaacatgctgctacattacataccgctctttgatcatagctcttgaaactccgctgctactaagttcagctggtgatgaaccagtagcttgaacagagagtgtctgaagaatctgaaataattcaagcaagatagttatagcacaacaggatcatcattcactgtatttgacgatttgcaagagagaacaaaattctgaaccatctagcccacagtaatgcaccgtgcatgcataaaagtccatgtctactggacttcagaaatttacaaaTttttacttgtcaaattaagttaagcgtatgatagactatgaagataatcagttcattcaagcttaacagaaacccaaatcaagacaataacctctgcagttggcttcaagtgcacttttagctgagataaaaccaattgaccattttgatccgctatcagtaaattgctatatgcatcattactacacttcaacaactgcatacaacacctcaaacaggtagaagaccatagtttctctgcatgaaccacgctgacaaacaaaatataacatcctaagagaataaaaagatcaactatcagcatcatggcttcccgaaggatccagccgagggtccaagccataagctcaatagcccataatggattaatgtgaccatagcggtgactgggattgatcagagtgaacagtactgtaaaacataagaaatgcagtatgtcagattactagagatctcattgaggcactgacctttgcccatgcaacccttttgtactggttggcattttgctgtacaaccctacggtgcctctgaatccagtcgtcaccgagtatatccttggcttctgatctgaggtgacaaaaaattattacctctgacaattatatcatgtctaaacttctcaaattgttaaagaacatagaccgtttcatagttcagggcgtaacattagacaattgcAaaaattcagggagtacaatttggaattttcctaagaatatgttatgctttatgtcctcaagaagaatgtttcatataatatttccaggtatactcttaaaccacagaaaatacctttgcacatgcttccacttaattcattaatgcactcctacagtcccacttaagcatggtcaggtattcacagttgggtgttgtatcacatacattgcaactcaagaagaaaactgacagcacatagtgttaaattcaaaagtctctagccagcataaaaaggactcgaaattaacagggataaagtggtcattttagacaacgccttaatcctgatgtaatatactaaaccgacatctaagtatgaagacatgagggagtattgaacaggcttgcttccaggacaacaacacctgaaacataacaaggaacatacctgcggacagatctaaccatatagtgaatgttgttcataagaaatatataggtcaatgcaggatccttatactgcttagatttcccatctaagttattctgaagggcttgcattatcttcattgtaacaactgcaagttgagattcagtctcactgccagtttcaaattcctgaaagagtatcttcagtgttgactgataactgctcaagtcaaacacaaaagtttgtcagtgtgctgtacacaaaatgagttcagaaatatttttatggctgtatAaaaaaaatatcaacaattgaacctcacttaaagaactaaaacttggggtatatattgaaacaatggacccaggaggtttctcaaaggtctggatccaaatcagcatttactagtattacagtactcaagcgtgttaaaagcatgagtgtgactaatctgtgtttggaggtggaacaaaagggagtgttaaggacaatgcctgaataaactactacacaggaaagagagtgcattattaatttatcactgctcaaaggagatgatatattcagtatttgtctgagtatagctaatacatactcgaagatatgtgttaaaactatttgtgattgcaactagttactacagtcacacaaatcttctacatgtccaagaatgtggtaatagtgatacttactcaaatagaaatttgacataattaataacatagctagtcaaaggatggaccgtcccatcctgcacaatagtcttggaagtatccttttcaactgcctcctcaaaatcagcaaatgtttcttgggctgtctgtgccaagcgcctagttaagcctaatgcagcctcccgcatctcagagcaaaatctgccttcaaaaatttcttcaacctgacaataaggttcaaacgaaggtaaaaatagaatttttccagtcctcaaagacttgacgttaaaattgatgacacaacagtatcaacaattccaaatgctagcactacaagcttgactatgcaacttccatttggtatataattaccacacggcaaaactaggatgcaactgaatatatgaacttttccttgcagttctgtataaattatttccaacatacctctggctggagttcatgcattacttcatacatgtctagcaatacaaataatttttcaggtgatcttttacttttagcaacagcatctccaaaactgagaagtgtcaatacgctacttcctgccagttcagcaaaacattgatccttgttgaaattaataccatcaaaaacctggtcacaaattctccgttctccagcaagtaataatttgacctgattgaagcacaatctgttagcctggtgtttggaaacatatactagaacattgtcagaaagatcctcaccgcaattcgcataaactgggtccagtttccaattttagcctctaaggcttcccattgcattctttgcacatcatccttactaagcttttctacacccagtttccgtaagctcacttctaaagccgaaccgcgagagtctctgaacaaagagaactaatttgaagttgatgtagattctggtgttacaaaccacttcagacgccaatcgaaagtataaacaaaaattatgacttgtctagcaataatcgaaataaccccatgttaaaacaacaaatcaaatctacctgtagattctatagcatgactgctgatttccagcctgaacgagttgctgagctatatcatgcagaagtggtaatattcttgggggcatcagggttggagtcctacatataccagtctccaagcctttggatggatgttcagagtgagtgtgtcctccatcagcatcattgtcatcttttggtgctcgtggaggctttggaaggcaatcaaataggcgatcaggttcaataggtttgctgaaagaacagggacaacagatcatatttgaagatttatcagagtagcagatgaattaccatgggcagaggtctaggaaacatacgtagtgctcctctaccatacaacaagaatcaacatgatgagggttcaggaatgtaaattcaacctgtatgtagtcatcagctgcttgaattcctcctcaatcttgagagcagacttggacaatatattgttgacgcgattcagaagtccatcgttgttcttaaggctcttgttcgaggcgaagaagcaaacaatgcttttcagcagatccacagcttctaggtagccctccagatcctcatgggggcccctcagtatcgtagcttcagcctaaagcacaataataataaaaaaaagcatagacataaattcaatgaacaaaagaagtcttgtcttcaatctacgcagagataaaggtaaacaaacaaatatagtagcgaaaatccaatcaagttccaatctaacagtacagacatatctaaagtagcagcagcgtcataagaaaattccgcatcaaccaaactgttcatccttcctacattctaatgattcagaagcgataaagaaagggttaattggatccatgccactataaatttcacagtttgaaaatataccattactattcacctatttgatgccatgccattacaatttcacatctattgaaaatataccactacatacccttttatagtattttctaactttctatgaccaaattatccctttcttcttcctccatcctcttctttcttccccttcctcaacgaactctgaagagcttgcatagtcggacacggaaatggactgcacgacgaagttcaaagaggctaacggcagcggccgttcacgtcgacgatggtgtgctggataggctggccattgtggcatggattgcaggagcgtccgccaatcgttggaggcgtgggctggcaaggtgctgtgccctatcatccggcacaacgtgtacgaactagcttggatatatacactcctattgccatggttcagacgacacgcacggaggccaatgcatgtagtacgtttctacataacattgctgaatcgtagctaaaatgagtgcaaacaggtaactctcacatctgtatgcaatatcctcctgctccaccagcggcagcgcgagctgtcaagcttatcggagttcgtcagctagcagagagaagagaagaggaaggaagaagggagaaagaaaggggtaaTttggtccttaaaatatagaaaatgctacgaaggggtatatagtggcatatctcaaatacgtgtgaaattataatggtatggtactaaataagtgaatagtaatggtatatttctaatccgtgaaatttataatggcatggatccaattaacccataaagaaactagtagtgatcatggaaaaatgatgaagctctcaaccaaaaaggaaaaatgatgaagctctcaaccaaaaggaaatgagctaatcattgatgtcatccttgacaataaaaccgaaatgtacttattcagttgatctgcactaatatgatatgaccactctgagagaattttactgcatgaccatcatttcactagggacccacaatcaaaggatcatccagtagacgcacattagccacttcaataccacaaaacaaaccaatcaaactcatctaatctagttgagtctctttatttacattttcTtttttgttggattgatttggaaatgggaatgatgatgatgagtgcaaaaacccacccggcgggcaaggtcgaactgggagaggatggcgtcggcggccttgatcgtcttgtcgatgttctcgtgcgccatccggatcgcgtgcgtcctcacctgcatttgatccaaaccgctttaatttcgttcactccccgcaccacgtagtcgctcgccgccgacgacgacgacgacgagcaaatcaaagcgaacgggggaatggggggaggggaggcacctgggtggggcgcatggcggcctcgagcgcggagaggcggtggtcgaaggacccgaggatggcgaccatgctctccgtgttcccctggctcctccccagcgcgtcccgcagcgtgctcgcccgccgcgccagcgcgtccatcacccgcggaagctccgccacccccatctccccacctccgcgtggtcggaggagaaccttctagaaggttccggaaggaggatggagcagcgtcgacggcgaacgtctcaccgcccgtgctcccgccgccgcggagaaggaagggaagagagagaaggggggag
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| CDS seq | atgggggtggcggagcttccgcgggtgatggacgcgctggcgcggcgggcgagcacgctgcgggacgcgctggggaggagccaggggaacacggagagcatggtcgccatcctcgggtccttcgaccaccgcctctccgcgctcgaggccgccatgcgccccacccaggtgaggacgcacgcgatccggatggcgcacgagaacatcgacaagacgatcaaggccgccgacgccatcctctcccagttcgaccttgcccgccgggctgaagctacgatactgaggggcccccatgaggatctggagggctacctagaagctgtggatctgctgaaaagcattgtttgcttcttcgcctcgaacaagagccttaagaacaacgatggacttctgaatcgcgtcaacaatatattgtccaagtctgctctcaagattgaggaggaattcaagcagctgatgactacatacagagactctcgcggttcggctttagaagtgagcttacggaaactgggtgtagaaaagcttagtaaggatgatgtgcaaagaatgcaatgggaagccttagaggctaaaattggaaactggacccagtttatgcgaattgcggttgaagaaatttttgaaggcagattttgctctgagatgcgggaggctgcattaggcttaactaggcgcttggcacagacagcccaagaaacatttgctgattttgaggaggcagttgaaaaggatacttccaagactattgtgcaggatgggacggtccatcctttgactagctatgttattaattatgtcaaatttctatttgattatcagtcaacactgaagatactctttcaggaatttgaaactggcagtgagactgaatctcaacttgcagttgttacaatgaagataatgcaagcccttcagaataacttagatgggaaatctaagcagtataaggatcctgcattgacctatatatttcttatgaacaacattcactatatggttagatctgtccgcagatcagaagccaaggatatactcggtgacgactggattcagaggcaccgtagggttgtacagcaaaatgccaaccagtacaaaagggttgcatgggcaaagttgttgaagtgtagtaatgatgcatatagcaatttactgatagcggatcaaaatggtcaattggttttatctcagctaaaagtgcacttgaagccaactgcagagattcttcagacactctctgttcaagctactggttcatcaccagctgaacttagtagcagcggagtttcaagagctatgatcaaagagcgatttaagtccttcaatatgcaatttgaagagcttcatgctaagcaaactcaatggactatacctgatcaagaattgcgagaatctctgagacttgctgttgctgaagttctcttgccagcctatcggtctttcatcaaacgttttggaaatctcgttgaacatgggaagaacccaaataagtatatcagatactccccagagaatatagatcaggctctgggtgagttttttgatggacagcaatttggtgaacaaaagcgataa
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| Protein seq | MGVAELPRVMDALARRASTLRDALGRSQGNTESMVAILGSFDHRLSALEAAMRPTQVRTHAIRMAHENIDKTIKAADAILSQFDLARRAEATILRGPHEDLEGYLEAVDLLKSIVCFFASNKSLKNNDGLLNRVNNILSKSALKIEEEFKQLMTTYRDSRGSALEVSLRKLGVEKLSKDDVQRMQWEALEAKIGNWTQFMRIAVEEIFEGRFCSEMREAALGLTRRLAQTAQETFADFEEAVEKDTSKTIVQDGTVHPLTSYVINYVKFLFDYQSTLKILFQEFETGSETESQLAVVTMKIMQALQNNLDGKSKQYKDPALTYIFLMNNIHYMVRSVRRSEAKDILGDDWIQRHRRVVQQNANQYKRVAWAKLLKCSNDAYSNLLIADQNGQLVLSQLKVHLKPTAEILQTLSVQATGSSPAELSSSGVSRAMIKERFKSFNMQFEELHAKQTQWTIPDQELRESLRLAVAEVLLPAYRSFIKRFGNLVEHGKNPNKYIRYSPENIDQALGEFFDGQQFGEQKR |
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| Function | Exocyst complex component EXO70A1 [UniProtKB/Swiss-Prot:Q9LZD3] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0004290 | OsNaBo_12g0004290.01 | Chr12 | 3096689 | 3103139 | - | NAM | ||
| CDS seq | atgggggtggcggagcttccgcgggtgatggacgcgctggcgcggcgggcgagcacgctgcgggacgcgctggggaggagccaggggaacacggagagcatggtcgccatcctcgggtccttcgaccaccgcctctccgcgctcgaggccgccatgcgccccacccaggtgaggacgcacgcgatccggatggcgcacgagaacatcgacaagacgatcaaggccgccgacgccatcctctcccagttcgaccttgcccgccgggctgaagctacgatactgaggggcccccatgaggatctggagggctacctagaagctgtggatctgctgaaaagcattgtttgcttcttcgcctcgaacaagagccttaagaacaacgatggacttctgaatcgcgtcaacaatatattgtccaagtctgctctcaagattgaggaggaattcaagcagctgatgactacatacagagactctcgcggttcggctttagaagtgagcttacggaaactgggtgtagaaaagcttagtaaggatgatgtgcaaagaatgcaatgggaagccttagaggctaaaattggaaactggacccagtttatgcgaattgcggttgaagaaatttttgaaggcagattttgctctgagatgcgggaggctgcattaggcttaactaggcgcttggcacagacagcccaagaaacatttgctgattttgaggaggcagttgaaaaggatacttccaagactattgtgcaggatgggacggtccatcctttgactagctatgttattaattatgtcaaatttctatttgattatcagtcaacactgaagatactctttcaggaatttgaaactggcagtgagactgaatctcaacttgcagttgttacaatgaagataatgcaagcccttcagaataacttagatgggaaatctaagcagtataaggatcctgcattgacctatatatttcttatgaacaacattcactatatggttagatctgtccgcagatcagaagccaaggatatactcggtgacgactggattcagaggcaccgtagggttgtacagcaaaatgccaaccagtacaaaagggttgcatgggcaaagttgttgaagtgtagtaatgatgcatatagcaatttactgatagcggatcaaaatggtcaattggttttatctcagctaaaagtgcacttgaagccaactgcagagattcttcagacactctctgttcaagctactggttcatcaccagctgaacttagtagcagcggagtttcaagagctatgatcaaagagcgatttaagtccttcaatatgcaatttgaagagcttcatgctaagcaaactcaatggactatacctgatcaagaattgcgagaatctctgagacttgctgttgctgaagttctcttgccagcctatcggtctttcatcaaacgttttggaaatctcgttgaacatgggaagaacccaaataagtatatcagatactccccagagaatatagatcaggctctgggtgagttttttgatggacagcaatttggtgaacaaaagcgataa
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| Protein seq | MGVAELPRVMDALARRASTLRDALGRSQGNTESMVAILGSFDHRLSALEAAMRPTQVRTHAIRMAHENIDKTIKAADAILSQFDLARRAEATILRGPHEDLEGYLEAVDLLKSIVCFFASNKSLKNNDGLLNRVNNILSKSALKIEEEFKQLMTTYRDSRGSALEVSLRKLGVEKLSKDDVQRMQWEALEAKIGNWTQFMRIAVEEIFEGRFCSEMREAALGLTRRLAQTAQETFADFEEAVEKDTSKTIVQDGTVHPLTSYVINYVKFLFDYQSTLKILFQEFETGSETESQLAVVTMKIMQALQNNLDGKSKQYKDPALTYIFLMNNIHYMVRSVRRSEAKDILGDDWIQRHRRVVQQNANQYKRVAWAKLLKCSNDAYSNLLIADQNGQLVLSQLKVHLKPTAEILQTLSVQATGSSPAELSSSGVSRAMIKERFKSFNMQFEELHAKQTQWTIPDQELRESLRLAVAEVLLPAYRSFIKRFGNLVEHGKNPNKYIRYSPENIDQALGEFFDGQQFGEQKR
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0004290 | OsNaBo_12g0004290.02 | Chr12 | 3096656 | 3103276 | - | IsoSeq | ||
| CDS seq | tccccccttctctctcttcccttccttctccgcggcggcgggagcacgggcggtgagacgttcgccgtcgacgctgctccatcctccttccggaaccttctagaaggttctcctccgaccacgcggaggtggggagatgggggtggcggagcttccgcgggtgatggacgcgctggcgcggcgggcgagcacgctgcgggacgcgctggggaggagccaggggaacacggagagcatggtcgccatcctcgggtccttcgaccaccgcctctccgcgctcgaggccgccatgcgccccacccaggtgaggacgcacgcgatccggatggcgcacgagaacatcgacaagacgatcaaggccgccgacgccatcctctcccagttcgaccttgcccgccgg
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| Protein seq | SPLLSLPFLLRGGGSTGGETFAVDAAPSSFRNLLEGSPPTTRRWGDGGGGASAGDGRAGAAGEHAAGRAGEEPGEHGEHGRHPRVLRPPPLRARGRHAPHPGEDARDPDGAREHRQDDQGRRRHPLPVRPCPP |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| SE | Chr12 | 3099953 | 3100461 | - | OsNaBo_12g0004290.02 | OsNaBo_12g0004290.02,OsNaBo_12g0004290.01 | All |
| SE | Chr12 | 3100599 | 3101131 | - | OsNaBo_12g0004290.02 | OsNaBo_12g0004290.02,OsNaBo_12g0004290.01 | All |
| SE | Chr12 | 3097802 | 3098433 | - | OsNaBo_12g0004290.01 | OsNaBo_12g0004290.02,OsNaBo_12g0004290.01 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 5.675022 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0159700 | RBH | 0.125010 | 0.0 | 1.829184 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06270 | RBH | 0.043425 | 0.0 | 0.201472 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0159700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0004000 | RBH | 0.0 | 0.0 | 1.820133 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004240 | RBH | 0.0 | 0.0 | 1.807577 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004240 | RBH | 0.0 | 0.0 | 3.727523 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0004070 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004270 | RBH | 0.000000 | 2.946326 | 12.732615 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0051700 | RBH | 0.077021 | 0.6014095 | 0.6769005 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004260 | RBH | 0.0 | 0.0 | 3.623436 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0056200 | RBH | 0.0568505 | 0.3880775 | 1.4630305 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0004030 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004250 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004260 | RBH | 0.0 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004210 | RBH | 0.0 | 0.0 | 0.298559 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0004160 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G004080 | RBH | 0.086195 | 0.0 | 0.838538 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0003980 | RBH | 0.0 | 19.452702 | 5.657582 |
