Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0004120 | OGI:12007690 | 15/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:2942453-2944345 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgggcatttggtttcactaccatcctctatgccaaaggaccaaggctcttactttagcatgctctggaatttattttgctactcgtgctttctgtgacaagccgaaccacaggattgtccacaaggataaaaatcttgttagggtcgagagggatttgattgacgcgTttacactccatgaacttctgcagttatgtgcaaagaggaggtccctcttagttgggaaaagctgccatggattagccattcattttgggctggtaactgatactgtcacatgcaatattctcatcaacttgtacacaaaatgtggccagaatgattgtgctcgtcgcgtttttgatgcaatgtctgtcagaagcataatctcttggaacaccatgattgctggatatactcataatagagaggatgtagaagcactgaagcttttttcaagaatgcaccgagaagggacccagatgaccgaatttaccttatccagcactctctgcgcatgtgctgcgaaatatgctattattgaatgcaaacagttacacactattgccatcaagcttgcacttgattctagcagttttgttgggactgcatttcttgatgtttatgcaaagtgtaatatgataaaggatgcctgctgggttttcgagaatatgcctgagaaaacttcagttacatggagttcattatttgcaggatttgtgcagaatggtctccatgaagaggtattgtgtttatttcagagtacacaaagggaaggaatgcaattgactgaattcactgtttcatctatcctcagcacatgcgcaagcttagcattgataattgaaggaacacaggtgcatgcagttattgttaagcatggttttcataggaacctctttgtagcaacatctcttgtggatgtctatgcaaagtgtggtcagattgaaaaatcatatgaagtatttgctgatatggaagaaaagaatgttgtcttatggaatgcaatgattgctagtttttctaggcatgctcattcttgggaagcaatgattctctttgagAaaatgcagcaggtggggatttttccaaacgaagttacctatctctccatcttgtcagcatgcagtcatactggcttagttgaagagggccgtcactactttaacctgctattgtctgatcggaccgctgaacctaatgtccttcactattcttgtatggttgatgttttggggcgatctgggaagactgatgaggcttggaaattacttgataaaatgccatttgaaccaactgcatctatgtggggatctttgcttggatcaagcaggatccacaagaatattagattagccagaatagcagctgaacagcttttccgtcttgagcctgaaaatggagggaaccatgttttgctatcaaatgtatatgctgccagtggaaactgggagaatgttgttgttgcaaggaagtatttgagggatagtggtgctaaaaaagagatgggcaggagttggatcgaggcgaaaggcaagattcatgtttttgttgctggagagagagaacacccaggaataactgatgtatacaataagttggaggaaatttaccatgagatgaGaaagatttctcacagagccaacacacaatgtgatctgcatgatgtgcatgctgaccaaaaagaggagctacttaaacaccacagtgagaaactagcatttgcttttggtttaatcagcttgccccctaatataccaattactatatacaagaaccttaggatctgcggagactgtcattcctttatgaagattgtatcctgtattacagaacgccaagtcaTtgtcagagatatcaatagatttcaccattttaaggatggctcatgttcttgtggggacttctggtga
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| CDS seq | atgggcatttggtttcactaccatcctctatgccaaaggaccaaggctcttactttagcatgctctggaatttattttgctactcgtgctttctgtgacaagccgaaccacaggattgtccacaaggataaaaatcttgttagggtcgagagggatttgattgacgcgTttacactccatgaacttctgcagttatgtgcaaagaggaggtccctcttagttgggaaaagctgccatggattagccattcattttgggctggtaactgatactgtcacatgcaatattctcatcaacttgtacacaaaatgtggccagaatgattgtgctcgtcgcgtttttgatgcaatgtctgtcagaagcataatctcttggaacaccatgattgctggatatactcataatagagaggatgtagaagcactgaagcttttttcaagaatgcaccgagaagggacccagatgaccgaatttaccttatccagcactctctgcgcatgtgctgcgaaatatgctattattgaatgcaaacagttacacactattgccatcaagcttgcacttgattctagcagttttgttgggactgcatttcttgatgtttatgcaaagtgtaatatgataaaggatgcctgctgggttttcgagaatatgcctgagaaaacttcagttacatggagttcattatttgcaggatttgtgcagaatggtctccatgaagaggtattgtgtttatttcagagtacacaaagggaaggaatgcaattgactgaattcactgtttcatctatcctcagcacatgcgcaagcttagcattgataattgaaggaacacaggtgcatgcagttattgttaagcatggttttcataggaacctctttgtagcaacatctcttgtggatgtctatgcaaagtgtggtcagattgaaaaatcatatgaagtatttgctgatatggaagaaaagaatgttgtcttatggaatgcaatgattgctagtttttctaggcatgctcattcttgggaagcaatgattctctttgagAaaatgcagcaggtggggatttttccaaacgaagttacctatctctccatcttgtcagcatgcagtcatactggcttagttgaagagggccgtcactactttaacctgctattgtctgatcggaccgctgaacctaatgtccttcactattcttgtatggttgatgttttggggcgatctgggaagactgatgaggcttggaaattacttgataaaatgccatttgaaccaactgcatctatgtggggatctttgcttggatcaagcaggatccacaagaatattagattagccagaatagcagctgaacagcttttccgtcttgagcctgaaaatggagggaaccatgttttgctatcaaatgtatatgctgccagtggaaactgggagaatgttgttgttgcaaggaagtatttgagggatagtggtgctaaaaaagagatgggcaggagttggatcgaggcgaaaggcaagattcatgtttttgttgctggagagagagaacacccaggaataactgatgtatacaataagttggaggaaatttaccatgagatgaGaaagatttctcacagagccaacacacaatgtgatctgcatgatgtgcatgctgaccaaaaagaggagctacttaaacaccacagtgagaaactagcatttgcttttggtttaatcagcttgccccctaatataccaattactatatacaagaaccttaggatctgcggagactgtcattcctttatgaagattgtatcctgtattacagaacgccaagtcaTtgtcagagatatcaatagatttcaccattttaaggatggctcatgttcttgtggggacttctggtga
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| Protein seq | MGIWFHYHPLCQRTKALTLACSGIYFATRAFCDKPNHRIVHKDKNLVRVERDLIDAFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW |
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| Function | Pentatricopeptide repeat-containing protein At5g04780, mitochondrial [UniProtKB/Swiss-Prot:Q9LZ19] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0004120 | OsNaBo_12g0004120.01 | Chr12 | 2942453 | 2944345 | + | NAM | ||
| CDS seq | atgggcatttggtttcactaccatcctctatgccaaaggaccaaggctcttactttagcatgctctggaatttattttgctactcgtgctttctgtgacaagccgaaccacaggattgtccacaaggataaaaatcttgttagggtcgagagggatttgattgacgcgTttacactccatgaacttctgcagttatgtgcaaagaggaggtccctcttagttgggaaaagctgccatggattagccattcattttgggctggtaactgatactgtcacatgcaatattctcatcaacttgtacacaaaatgtggccagaatgattgtgctcgtcgcgtttttgatgcaatgtctgtcagaagcataatctcttggaacaccatgattgctggatatactcataatagagaggatgtagaagcactgaagcttttttcaagaatgcaccgagaagggacccagatgaccgaatttaccttatccagcactctctgcgcatgtgctgcgaaatatgctattattgaatgcaaacagttacacactattgccatcaagcttgcacttgattctagcagttttgttgggactgcatttcttgatgtttatgcaaagtgtaatatgataaaggatgcctgctgggttttcgagaatatgcctgagaaaacttcagttacatggagttcattatttgcaggatttgtgcagaatggtctccatgaagaggtattgtgtttatttcagagtacacaaagggaaggaatgcaattgactgaattcactgtttcatctatcctcagcacatgcgcaagcttagcattgataattgaaggaacacaggtgcatgcagttattgttaagcatggttttcataggaacctctttgtagcaacatctcttgtggatgtctatgcaaagtgtggtcagattgaaaaatcatatgaagtatttgctgatatggaagaaaagaatgttgtcttatggaatgcaatgattgctagtttttctaggcatgctcattcttgggaagcaatgattctctttgagAaaatgcagcaggtggggatttttccaaacgaagttacctatctctccatcttgtcagcatgcagtcatactggcttagttgaagagggccgtcactactttaacctgctattgtctgatcggaccgctgaacctaatgtccttcactattcttgtatggttgatgttttggggcgatctgggaagactgatgaggcttggaaattacttgataaaatgccatttgaaccaactgcatctatgtggggatctttgcttggatcaagcaggatccacaagaatattagattagccagaatagcagctgaacagcttttccgtcttgagcctgaaaatggagggaaccatgttttgctatcaaatgtatatgctgccagtggaaactgggagaatgttgttgttgcaaggaagtatttgagggatagtggtgctaaaaaagagatgggcaggagttggatcgaggcgaaaggcaagattcatgtttttgttgctggagagagagaacacccaggaataactgatgtatacaataagttggaggaaatttaccatgagatgaGaaagatttctcacagagccaacacacaatgtgatctgcatgatgtgcatgctgaccaaaaagaggagctacttaaacaccacagtgagaaactagcatttgcttttggtttaatcagcttgccccctaatataccaattactatatacaagaaccttaggatctgcggagactgtcattcctttatgaagattgtatcctgtattacagaacgccaagtcaTtgtcagagatatcaatagatttcaccattttaaggatggctcatgttcttgtggggacttctggtga
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| Protein seq | MGIWFHYHPLCQRTKALTLACSGIYFATRAFCDKPNHRIVHKDKNLVRVERDLIDAFTLHELLQLCAKRRSLLVGKSCHGLAIHFGLVTDTVTCNILINLYTKCGQNDCARRVFDAMSVRSIISWNTMIAGYTHNREDVEALKLFSRMHREGTQMTEFTLSSTLCACAAKYAIIECKQLHTIAIKLALDSSSFVGTAFLDVYAKCNMIKDACWVFENMPEKTSVTWSSLFAGFVQNGLHEEVLCLFQSTQREGMQLTEFTVSSILSTCASLALIIEGTQVHAVIVKHGFHRNLFVATSLVDVYAKCGQIEKSYEVFADMEEKNVVLWNAMIASFSRHAHSWEAMILFEKMQQVGIFPNEVTYLSILSACSHTGLVEEGRHYFNLLLSDRTAEPNVLHYSCMVDVLGRSGKTDEAWKLLDKMPFEPTASMWGSLLGSSRIHKNIRLARIAAEQLFRLEPENGGNHVLLSNVYAASGNWENVVVARKYLRDSGAKKEMGRSWIEAKGKIHVFVAGEREHPGITDVYNKLEEIYHEMRKISHRANTQCDLHDVHADQKEELLKHHSEKLAFAFGLISLPPNIPITIYKNLRICGDCHSFMKIVSCITERQVIVRDINRFHHFKDGSCSCGDFW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.362450 | 1.576560 | 1.139574 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0156900 | RBH | 1.587109 | 1.215923 | 0.312527 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g06070 | RBH | 1.078956 | 0.822129 | 0.080876 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0156900 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0003820 | RBH | 0.001994 | 0.0 | 0.333919 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0004060 | RBH | 0.135277 | 0.0 | 0.505612 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0004070 | RBH | 0.222475 | 1.177739 | 1.392096 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0003890 | RBH | 0.110397 | 0.041788 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0004080 | RBH | 1.360536 | 0.0 | 2.525823 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0026600 | SBH | 1.3316675 | 2.752294 | 6.20309 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0004070 | RBH | 0.153337 | 0.0 | 0.063596 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0054000 | RBH | 0.696794 | 2.8140745 | 3.2739435 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0003850 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0004070 | RBH | 0.284918 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0004080 | RBH | 0.0 | 1.667798 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0004030 | RBH | 0.262453 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0003990 | RBH | 0.031185 | 0.732524 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G003910 | RBH | 0.289880 | 0.665881 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002140 | SBH | 0.0 | 0.0 | 0.0 |
