Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0002360 | OGI:11005240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:1680581-1683223 | ||||||||
| Gene Symbol | SDRLK-7 | ||||||||||
| DNA seq | ttccattagaccattactaaataacatgaaaaatttacaagatataagtaagacacacaattatatagaactttatatacattacggtgatcctaggaaatgaagacttctagaattagtatagtcctagcaataacataccactaagggactccatattataaatattctcccttggtacattattaTtttattaacttctagctaaatcaactgaaaggaggctctcgactattgattccattgttggccttttcttcctatcttcttctaagcaggacacagccaactttaccaaagtttttgcttgcaagtagttgaattcatcacccactctgaaatctacgaactctgctaaccacaatgatttctcattgtccaatctataacaaatcattttaataaacttcttgagcatctcatgcaccttcgtcttatcctctcctatgatcagatcaaagactcgttttcctgacactagctcaagaagaacgactccataactatatacatcaactttgctgttattggtaaaccagatatccattctggagcaatgtaacctatggtccctcgtgctcgtgaaacattctgcttagagccagatctactaagcagctttgccaacccaaagtcagcgatcttaggttctaagttctcatccagcaaaatgttctctggatttaggttgcagtgaatgacccactctaggcactcatggtgaagataagccagtccctttgcaacgcctaaagcaatattaaacctttgcttccaatctaacaagattttactgttgaatagtacattagccaatgatccattctcaacatactctaagaccagcaacctatggaatctttctgagcaaaaaccataaattcttactaggttcatatggttgattcttgaaataacatgcaactcatcctgaaactcctccctatttcgcgtgacattttccaacttttttatgaccactgctcgatcgtcatccaatattcccttatagacgactcctgaacctccccatccaagctcatgtttaaacctttcagttgccttaaccagctctctataactatacattcgaaaatgactagtcatcaccctgtagccttcctcagctgcccatacttcagatgaccgcatctccttcctcaagacaaggaaccatgcaaatgcgaagaagaaaacctcaacaacgaaaaacacaccgataaacccatagaagtagaaccattttggttcctccccatcaatcttattcatgttacgaactgcctctgtggttattgtgtttacacgatcacagtcaagtccacttggtgtataatcatgtatactagactgtggaatgggttttttagaaacatccaaacttgaaggaagtttgatatacatcgttcgcacaaaaggtgtcgggaaagtccttccattaaagagaaaagattttggatagcatgtaccatttccttcttggtactgaaatcccttacatgtgcaatcacttatgcaagtgttccaacacacctcccagggtaccttttcaatacgttgttgatcagaaccccaaaaatcagtgtttcgaagttgcaaaaatgttacattctgtttaccatcgcatgcaatttcgacaataggcttgcaaccttgtgtccagttacccggattcctcatcttataaccaggtgggcatgaacatcttggtgtaggtgaatagtggcagattccatatggaccacacaaaccatgagtcatgcatgtttgaggttgagcaatccatgaaattgtccatgttccatctgagttattcaagctatagagtctaagattaccatcataatccaaggtaagcctccttttaatccccaaacttctatcagaggcaacacgggcttgatgcttagcaagatcactcgaaaaaaattctccataatcatcaagactacctatccttgtactgttataaaggttcctattattctcatagtattggtaatcaggatctggccagtatacgccggaaacattagtgtcatcatatataagtgacaatatcgactgatcgctgaaacagaaggaatagtgaccaggaacctgtaacccagtggtagagactaactttgtagtagcgagaatgcgttgagtaggaagcaaagtgtctgtcggtgaatcgaaactttgccaaacaatgtttccactggaattcttcaagacaaggttaccagtgttcagtaattgaacataccgaacattagggaatttaccgtcagtttgccacacgactgtgccgtcatagtcagtgaggactatgtttccatccttgcgcagagtgatctccgatctccttgagtgcacgggacggccacggtttgcgctccatacgatggccttatcagctgaattggagtaccaaattgagaaggtgaaggcgctagtgatgttgtaggctttagtgatgttgtagaagccacatgagaatgtgccatcagatgactgcaggatgttggtttcatactcttcaacaaatagagaggatttcagtggtagaatatcatgagttgcagcactccatggtagagcaagcaaaaagaggatggccagaacagcaagtgaagtagtaagaaatggagcatccat
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| CDS seq | atggatgctccatttcttactacttcacttgctgttctggccatcctctttttgcttgctctaccatggagtgctgcaactcatgatattctaccactgaaatcctctctatttgttgaagagtatgaaaccaacatcctgcagtcatctgatggcacattctcatgtggcttctacaacatcactaaagcctacaacatcactagcgccttcaccttctcaatttggtactccaattcagctgataaggccatcgtatggagcgcaaaccgtggccgtcccgtgcactcaaggagatcggagatcactctgcgcaaggatggaaacatagtcctcactgactatgacggcacagtcgtgtggcaaactgacggtaaattccctaatgttcggtatgttcaattactgaacactggtaaccttgtcttgaagaattccagtggaaacattgtttggcaaagtttcgattcaccgacagacactttgcttcctactcaacgcattctcgctactacaaagttagtctctaccactgggttacaggttcctggtcactattccttctgtttcagcgatcagtcgatattgtcacttatatatgatgacactaatgtttccggcgtatactggccagatcctgattaccaatactatgagaataataggaacctttataacagtacaaggataggtagtcttgatgattatggagaatttttttcgagtgatcttgctaagcatcaagcccgtgttgcctctgatagaagtttggggattaaaaggaggcttaccttggattatgatggtaatcttagactctatagcttgaataactcagatggaacatggacaatttcatggattgctcaacctcaaacatgcatgactcatggtttgtgtggtccatatggaatctgccactattcacctacaccaagatgttcatgcccacctggttataagatgaggaatccgggtaactggacacaaggttgcaagcctattgtcgaaattgcatgcgatggtaaacagaatgtaacatttttgcaacttcgaaacactgatttttggggttctgatcaacaacgtattgaaaaggtaccctgggaggtgtgttggaacacttgcataagtgattgcacatgtaagggatttcagtaccaagaaggaaatggtacatgctatccaaaatcttttctctttaatggaaggactttcccgacaccttttgtgcgaacgatgtatatcaaacttccttcaagtttggatgtttctaaaaaacccattccacagtctagtatacatgattatacaccaagtggacttgactgtgatcgtgtaaacacaataaccacagaggcagttcgtaacatgaataagattgatggggaggaaccaaaatggttctacttctatgggtttatcggtgtgtttttcgttgttgaggttttcttcttcgcatttgcatggttccttgtcttgaggaaggagatgcggtcatctgaagtatgggcagctgaggaaggctacagggtgatgactagtcattttcgaatgtatagttatagagagctggttaaggcaactgaaaggtttaaacatgagcttggatggggaggttcaggagtcgtctataagggaatattggatgacgatcgagcagtggtcataaaaaagttggaaaatgtcacgcgaaatagggaggagtttcaggatgagttgcatgttatttcaagaatcaaccatatgaacctagtaagaatttatggtttttgctcagaaagattccataggttgctggtcttagagtatgttgagaatggatcattggctaatgtactattcaacagtaaaatcttgttagattggaagcaaaggtttaatattgctttaggcgttgcaaagggactggcttatcttcaccatgagtgcctagagtgggtcattcactgcaacctaaatccagagaacattttgctggatgagaacttagaacctaagatcgctgactttgggttggcaaagctgcttagtagatctggctctaagcagaatgtttcacgagcacgagggaccataggttacattgctccagaatggatatctggtttaccaataacagcaaagttgatgtatatagttatggagtcgttcttcttgagctag
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| Protein seq | MDAPFLTTSLAVLAILFLLALPWSAATHDILPLKSSLFVEEYETNILQSSDGTFSCGFYNITKAYNITSAFTFSIWYSNSADKAIVWSANRGRPVHSRRSEITLRKDGNIVLTDYDGTVVWQTDGKFPNVRYVQLLNTGNLVLKNSSGNIVWQSFDSPTDTLLPTQRILATTKLVSTTGLQVPGHYSFCFSDQSILSLIYDDTNVSGVYWPDPDYQYYENNRNLYNSTRIGSLDDYGEFFSSDLAKHQARVASDRSLGIKRRLTLDYDGNLRLYSLNNSDGTWTISWIAQPQTCMTHGLCGPYGICHYSPTPRCSCPPGYKMRNPGNWTQGCKPIVEIACDGKQNVTFLQLRNTDFWGSDQQRIEKVPWEVCWNTCISDCTCKGFQYQEGNGTCYPKSFLFNGRTFPTPFVRTMYIKLPSSLDVSKKPIPQSSIHDYTPSGLDCDRVNTITTEAVRNMNKIDGEEPKWFYFYGFIGVFFVVEVFFFAFAWFLVLRKEMRSSEVWAAEEGYRVMTSHFRMYSYRELVKATERFKHELGWGGSGVVYKGILDDDRAVVIKKLENVTRNREEFQDELHVISRINHMNLVRIYGFCSERFHRLLVLEYVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHECLEWVIHCNLNPENILLDENLEPKIADFGLAKLLSRSGSKQNVSRARGTIGYIAPEWISGLPITAKLMYIVMESFFLS |
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| Function | Putative receptor protein kinase ZmPK1 [UniProtKB/Swiss-Prot:P17801] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0002360 | OsNaBo_12g0002360.01 | Chr12 | 1680581 | 1683223 | - | NAM | ||
| CDS seq | atggatgctccatttcttactacttcacttgctgttctggccatcctctttttgcttgctctaccatggagtgctgcaactcatgatattctaccactgaaatcctctctatttgttgaagagtatgaaaccaacatcctgcagtcatctgatggcacattctcatgtggcttctacaacatcactaaagcctacaacatcactagcgccttcaccttctcaatttggtactccaattcagctgataaggccatcgtatggagcgcaaaccgtggccgtcccgtgcactcaaggagatcggagatcactctgcgcaaggatggaaacatagtcctcactgactatgacggcacagtcgtgtggcaaactgacggtaaattccctaatgttcggtatgttcaattactgaacactggtaaccttgtcttgaagaattccagtggaaacattgtttggcaaagtttcgattcaccgacagacactttgcttcctactcaacgcattctcgctactacaaagttagtctctaccactgggttacaggttcctggtcactattccttctgtttcagcgatcagtcgatattgtcacttatatatgatgacactaatgtttccggcgtatactggccagatcctgattaccaatactatgagaataataggaacctttataacagtacaaggataggtagtcttgatgattatggagaatttttttcgagtgatcttgctaagcatcaagcccgtgttgcctctgatagaagtttggggattaaaaggaggcttaccttggattatgatggtaatcttagactctatagcttgaataactcagatggaacatggacaatttcatggattgctcaacctcaaacatgcatgactcatggtttgtgtggtccatatggaatctgccactattcacctacaccaagatgttcatgcccacctggttataagatgaggaatccgggtaactggacacaaggttgcaagcctattgtcgaaattgcatgcgatggtaaacagaatgtaacatttttgcaacttcgaaacactgatttttggggttctgatcaacaacgtattgaaaaggtaccctgggaggtgtgttggaacacttgcataagtgattgcacatgtaagggatttcagtaccaagaaggaaatggtacatgctatccaaaatcttttctctttaatggaaggactttcccgacaccttttgtgcgaacgatgtatatcaaacttccttcaagtttggatgtttctaaaaaacccattccacagtctagtatacatgattatacaccaagtggacttgactgtgatcgtgtaaacacaataaccacagaggcagttcgtaacatgaataagattgatggggaggaaccaaaatggttctacttctatgggtttatcggtgtgtttttcgttgttgaggttttcttcttcgcatttgcatggttccttgtcttgaggaaggagatgcggtcatctgaagtatgggcagctgaggaaggctacagggtgatgactagtcattttcgaatgtatagttatagagagctggttaaggcaactgaaaggtttaaacatgagcttggatggggaggttcaggagtcgtctataagggaatattggatgacgatcgagcagtggtcataaaaaagttggaaaatgtcacgcgaaatagggaggagtttcaggatgagttgcatgttatttcaagaatcaaccatatgaacctagtaagaatttatggtttttgctcagaaagattccataggttgctggtcttagagtatgttgagaatggatcattggctaatgtactattcaacagtaaaatcttgttagattggaagcaaaggtttaatattgctttaggcgttgcaaagggactggcttatcttcaccatgagtgcctagagtgggtcattcactgcaacctaaatccagagaacattttgctggatgagaacttagaacctaagatcgctgactttgggttggcaaagctgcttagtagatctggctctaagcagaatgtttcacgagcacgagggaccataggttacattgctccagaatggatatctggtttaccaataacagcaaagttgatgtatatagttatggagtcgttcttcttgagctag
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| Protein seq | MDAPFLTTSLAVLAILFLLALPWSAATHDILPLKSSLFVEEYETNILQSSDGTFSCGFYNITKAYNITSAFTFSIWYSNSADKAIVWSANRGRPVHSRRSEITLRKDGNIVLTDYDGTVVWQTDGKFPNVRYVQLLNTGNLVLKNSSGNIVWQSFDSPTDTLLPTQRILATTKLVSTTGLQVPGHYSFCFSDQSILSLIYDDTNVSGVYWPDPDYQYYENNRNLYNSTRIGSLDDYGEFFSSDLAKHQARVASDRSLGIKRRLTLDYDGNLRLYSLNNSDGTWTISWIAQPQTCMTHGLCGPYGICHYSPTPRCSCPPGYKMRNPGNWTQGCKPIVEIACDGKQNVTFLQLRNTDFWGSDQQRIEKVPWEVCWNTCISDCTCKGFQYQEGNGTCYPKSFLFNGRTFPTPFVRTMYIKLPSSLDVSKKPIPQSSIHDYTPSGLDCDRVNTITTEAVRNMNKIDGEEPKWFYFYGFIGVFFVVEVFFFAFAWFLVLRKEMRSSEVWAAEEGYRVMTSHFRMYSYRELVKATERFKHELGWGGSGVVYKGILDDDRAVVIKKLENVTRNREEFQDELHVISRINHMNLVRIYGFCSERFHRLLVLEYVENGSLANVLFNSKILLDWKQRFNIALGVAKGLAYLHHECLEWVIHCNLNPENILLDENLEPKIADFGLAKLLSRSGSKQNVSRARGTIGYIAPEWISGLPITAKLMYIVMESFFLS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.747833 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0130200 | SBH | 0.019201 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g03640 | SBH | 0.000000 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0130200 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0001990 | SBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0002190 | RBH | 0.0 | 0.0 | 0.000000 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0002210 | RBH | 0.0 | 0.0 | 0.758288 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0002020 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0002210 | RBH | 0.000000 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0030300 | SBH | 0.302388 | 1.723489 | 7.834597 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0002220 | RBH | 0.0 | 0.030332 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0027000 | RBH | 0.3312695 | 1.603242 | 0.0259215 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0002080 | RBH | 0.0 | 0.045957 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0002260 | RBH | 0.000000 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0002230 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0002180 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0002230 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G002140 | RBH | 0.0 | 0.112545 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0002110 | SBH | 0.0 | 8.519257 | 0.0 |
