Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0001140 | OGI:11002520 | 2/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:785873-789576 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcattccacaacaaccacgaccgcctcctacctccgcctcctgcgccgcttccctcgccggagcgccgccggcggccaccagctccacgcgctgctcgccaagctcggcctgctccaccgctctgaatttctctccgctctcctctctcgcctcccgccttcgccgtcggcgctctccctcctactcgaggcacccccggccgtcctctcgccgtcactcgtctgcccggtaatcgtcgccttctcttcctcccaggccccgtcctccacgctcctcctcttcaatcatgcctcctcgtgctccctgcccaccccgcttcccaccttccctgcgctactcaaatcctgcgcccgcgcattcaaccacagctctcgcgccagtgccgcgtcggtcttcgtctccaaggggatggagctgcattgccgtgtcttgaagcttggctgcgggaaggatcgctatgtgcggaatgcgctcgtctccatgtatggcaagttcggtcgcctcggggatgcacggaaggcgttcgatgaaatgcctgacaagaatgccgtctcctggaatgcgttggtcggggctcatcgtgccgctgcagattggatgggtgcagaccgcgtgtctcaggccatgccagtgaggaacttgtcatggtggaatgctgagatcgcgcgaaatgtgaggatcgggtatatggatgaggctgcaaggattttcagcgaaatgccagagagggatgctgtatcatggaactctttgatcagtggctacacaaagctcggcaaatatacccaagcattggggatttttcaagaaatgcaggagaatggcattcaacctactgagcttacacttgtactagtccttggggcttgtgcaaagattggtaagctggacctggggacaaacatccacagaaacctttagaacaagggcattgtagctgatggcttggttggcaatgcactcattgatatgtatgcaaaatgtgggatgttggatcttgccaagaaggtctttgacagaatgtctatgagggatattacatgctggaatgcgatgatcgttggtttctctgtgcatggctgctcacgtgaggctctagagctctttgattcgatgaagattgagccaaatcctgtcacatttttgggtgtcttgaccgcctgcagccatggtggcctagtgaatgaggggaggaaatattttaatagcatgattgaggactacagaattgttcctgatgttaagcattatggctgcatgattgatatgctttgccgctatggaaaaattgaagaagcttatctgatgattaaagaaaacccttcaacagcaagctctgttctgtggaagatgttgttggcagcttgccgagtgcatgggcacatcgatcttgcttacatgttttttcatgaactacgtgagttgattctaactgataatggaggacttgtcacaatatcaaatgtttatgcagaagcgaagagatgggatgatgtcgagcatctgagaatgaaggtcagatgcaacagtgctttgaagcatgctgcacatagtcaaatggacgtaatgtaagcaatacatctgcctgaaactataggaaataatgatcattcttaattctagaagccctagctcttgagttttgctgggctgtagctccaataattttaatgttggtagcttcatttttatcttgatgttggtgtcaagtcattttaagtacagaagggttaagaagggcaaattataactattgttatggcatgcttgtttatcttaagatttccagatggacatatgtgtgatggcacaggaaaattaaccgataccgttgcttgaatggttttgttgatcaacaacaaatgtttctgaaactgaatcatgacttccgggctaattgaatgttttagacatgaataactggcagcaaaagaattgctcacatcattgccccttcactcatatcactcagtaccaaaggtttgggcagaagcagagatggagtgaagttgagtatctgagaacagagatgatcagatacaatgcctcaaagcatgctgcaaacagccaagttaattttaggtagccaataaacccgccgcaagctgtacagtgtaatattcagcttaatttccagaagtccactttgctaccacttctagactgtagttccaacgggtgagttcacgtttctcaagtaacTtttttatctatctgaatattgtttattcataatttcatattttctaaaattaccttctgtgatgtttaggacaatactgcttctaattctcaaagtgaagactgctgaactgtgaatttcgtaagaactttgagtcgtattaaactattaatgtattgatgcacagcagatgggagataaccttcttcttgtgctgaaatgtgcctgttccatcaaatgccttggatttttccactgagagtcctcgtttttgagtatgtcacaatcattgtggttaggactttggagaagtgcattgtttcccaacatgcatcagacaaaatgaaaatattgggtttctatccatttccattgcaatatgtgaaaTtttggatgtctactccacttagtgtctgttgtcagtaaactgcactggctaaattggctactgaaatgcagaaaaggagaatgaagttgaactctgtgctctgcctagaagtgatttcaatgcgaacgcttcgctagatcagtagcccatgaaaggtggaattttcagcaagtaccaaagcaagtagtatttcggtggaagttaaataccatggtgacgagctcgagaagctgatccagatgggcaaacacaaataggattgcagaatgcattctttcttggcttcatattgccagatggtaactgtaatatttgctatacaatgctggtgaacgacattccagtaaaagttttaagtttcggtgtatatggagcaatggaaatttatatgggcacaaatgaaacagttctggagactcagtaagagctgaatattaggggcaagaaggtatataaaatgactaatcttataaattataatctcctttgtcattgacatatctaatcttatctccttaattccatataaattaattagtactccctatcattttcttatttcaggcatgtagttggttggtgacattaggagcatggagttgatgccattcatgtgcatgcgaggttttatctgacctatcgagatgaggatcaaatgaacagagtagtatacgttgctaggcgacgtctctggatgaattaatggatcgatcaggttgctgcaggctgctatagctctgcaccaggaccaagcactgcacattactgtatctgtatggtcacactgatgaaaggagaaatttgcgaagtagctgctgatccatctgcccaatcgataggctacaaataaatgaagctggtagctttcattcaataaatatggattccttcaacagtggagtacccattgctctgtttgcccacagatggaattgaagctgcgtgtcaaatgtcaatctttctaaagacctgtcttttaatatgtatgcttgtgaattgtattttgtatatacgccatacataaaagtgatactgccattaagtcattactgttgcaatattctattcacaatgtaaattatctactgttgttatggtgtaatattggagactgtacgtatactttgtttc
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| CDS seq | atgcattccacaacaaccacgaccgcctcctacctccgcctcctgcgccgcttccctcgccggagcgccgccggcggccaccagctccacgcgctgctcgccaagctcggcctgctccaccgctctgaatttctctccgctctcctctctcgcctcccgccttcgccgtcggcgctctccctcctactcgaggcacccccggccgtcctctcgccgtcactcgtctgcccggtaatcgtcgccttctcttcctcccaggccccgtcctccacgctcctcctcttcaatcatgcctcctcgtgctccctgcccaccccgcttcccaccttccctgcgctactcaaatcctgcgcccgcgcattcaaccacagctctcgcgccagtgccgcgtcggtcttcgtctccaaggggatggagctgcattgccgtgtcttgaagcttggctgcgggaaggatcgctatgtgcggaatgcgctcgtctccatgtatggcaagttcggtcgcctcggggatgcacggaaggcgttcgatgaaatgcctgacaagaatgccgtctcctggaatgcgttggtcggggctcatcgtgccgctgcagattggatgggtgcagaccgcgtgtctcaggccatgccagtgaggaacttgtcatggtggaatgctgagatcgcgcgaaatgtgaggatcgggtatatggatgaggctgcaaggattttcagcgaaatgccagagagggatgctgtatcatggaactctttgatcagtggctacacaaagctcggcaaatatacccaagcattggggatttttcaagaaatgcaggagaatggcattcaacctactgagcttacacttgtactagtccttggggcttgtgcaaagattgaagcgaagagatgggatgatgtcgagcatctgagaatgaaggtcagatgcaacagtgctttgaagcatgctgcacatagtcaaatggacgtaatgcatgtagttggttggtga
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| Protein seq | MHSTTTTTASYLRLLRRFPRRSAAGGHQLHALLAKLGLLHRSEFLSALLSRLPPSPSALSLLLEAPPAVLSPSLVCPVIVAFSSSQAPSSTLLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIEAKRWDDVEHLRMKVRCNSALKHAAHSQMDVMHVVGW |
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| Function | Pentatricopeptide repeat-containing protein At1g74630 [UniProtKB/Swiss-Prot:Q9CA54] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001140 | OsNaBo_12g0001140.01 | Chr12 | 785873 | 789576 | + | NAM | ||
| CDS seq | atgcattccacaacaaccacgaccgcctcctacctccgcctcctgcgccgcttccctcgccggagcgccgccggcggccaccagctccacgcgctgctcgccaagctcggcctgctccaccgctctgaatttctctccgctctcctctctcgcctcccgccttcgccgtcggcgctctccctcctactcgaggcacccccggccgtcctctcgccgtcactcgtctgcccggtaatcgtcgccttctcttcctcccaggccccgtcctccacgctcctcctcttcaatcatgcctcctcgtgctccctgcccaccccgcttcccaccttccctgcgctactcaaatcctgcgcccgcgcattcaaccacagctctcgcgccagtgccgcgtcggtcttcgtctccaaggggatggagctgcattgccgtgtcttgaagcttggctgcgggaaggatcgctatgtgcggaatgcgctcgtctccatgtatggcaagttcggtcgcctcggggatgcacggaaggcgttcgatgaaatgcctgacaagaatgccgtctcctggaatgcgttggtcggggctcatcgtgccgctgcagattggatgggtgcagaccgcgtgtctcaggccatgccagtgaggaacttgtcatggtggaatgctgagatcgcgcgaaatgtgaggatcgggtatatggatgaggctgcaaggattttcagcgaaatgccagagagggatgctgtatcatggaactctttgatcagtggctacacaaagctcggcaaatatacccaagcattggggatttttcaagaaatgcaggagaatggcattcaacctactgagcttacacttgtactagtccttggggcttgtgcaaagattgaagcgaagagatgggatgatgtcgagcatctgagaatgaaggtcagatgcaacagtgctttgaagcatgctgcacatagtcaaatggacgtaatgcatgtagttggttggtga
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| Protein seq | MHSTTTTTASYLRLLRRFPRRSAAGGHQLHALLAKLGLLHRSEFLSALLSRLPPSPSALSLLLEAPPAVLSPSLVCPVIVAFSSSQAPSSTLLLFNHASSCSLPTPLPTFPALLKSCARAFNHSSRASAASVFVSKGMELHCRVLKLGCGKDRYVRNALVSMYGKFGRLGDARKAFDEMPDKNAVSWNALVGAHRAAADWMGADRVSQAMPVRNLSWWNAEIARNVRIGYMDEAARIFSEMPERDAVSWNSLISGYTKLGKYTQALGIFQEMQENGIQPTELTLVLVLGACAKIEAKRWDDVEHLRMKVRCNSALKHAAHSQMDVMHVVGW
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 0.000000 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0114400 | SBH | 0.357772 | 0.073381 | 0.174887 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02280 | SBH | 0.237012 | 0.048349 | 0.044102 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0114400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000920 | SBH | 0.089611 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001120 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001110 | SBH | 0.0 | 0.0 | 0.780775 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000940 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001050 | SBH | 0.000000 | 0.000000 | 0.700594 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0013300 | SBH | 0.531054 | 0.6060085 | 0.58788 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001050 | SBH | 0.000000 | 0.000000 | 0.075854 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0013400 | SBH | 1.401603 | 2.0723275 | 3.580571 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000930 | SBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001050 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001050 | SBH | 0.000000 | 0.000000 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001050 | SBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001050 | RBH | 0.0 | 0.633211 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000980 | RBH | 0.0 | 0.000000 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001040 | RBH | 0.968575 | 0.0 | 0.0 |
