Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0001110 | OGI:11002500 | 14/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:769345-774607 | ||||||||
| Gene Symbol | WNK8, OsWNK8, STE20/MAPK3, STE20, MAPK3, OsSTE20, OsMAPK3 | ||||||||||
| DNA seq | gtacaaatatcactcatatattcattcacatgtcgcatggcAaaattgtcatgaacaacactcatatatgcacttctctccaaatatacacaattttgtggccgcgggctagatagctagctgcacacttacgtactctgcatctgatcgatcattctgtacataccaaattagagtactaatttgctctgaaaaggtttattcagaacatgtagtggtgcttgtggtcgaccttgctgctgcttctCcggcgatgctgtgacgaagaagacgacgacgacgatccgtaagtagtagggtcgcggaagccgatgtcgtggacggcgccgacggtgttgaagaagaggcgcttgttgagctcctccaccagcgtcctgtgcaggagctggctccgcatgtccaccatcgacctgttccgactcatcctcctccgccgccgctcctcctccccctctcgctgccgtggccgtccggcgtgtcctcctccgtcttcagatgcagatgcagatgctggccccaatctgctggaagaggccgaacaatgctgctgctgcaggctgattgcgctgactgcagcagagagtgagctcgtgctgctgtcatcgtcgtcgctcacgctgacgctgcttggagggtagtaacagtaatctacaccatgcatcaaatcaaacggattagtcaattcaaaacatcatctactacaagtactaccactagctggttagtgcagttaataacgtgcgcatgaaatgaatggatatgaataaagatgcggtcgatgacagtgaaatggcgagctatatatgtaccatgtgtatgtatagtgcctaggatatatgattgatgtgtatgttacatgactaatattccatttgacatttatgctgctggccgccgggatgatgattgtaacaggactaactgaacgcaatttttatccgtctaaaatgtctctgcagagatcaattgtgacagtgatatatagccacaattaagcagcacgaacctaatgcatggctgtctgtaagctgccactagctagtactaggaacaaaacgatcgatataacgctgacgcatgtattggtgtcacaggattggcacgaatagcaacgacaaatggacaaagatatatcaaccaccttgctagctaactacctctagtagtttgcacgtctgacttccaatttctctgttcatatatatggtgactaggaaatttaatttcttgcctagctaggaacaaaagcagttgggcaaatgaacaaaagctacatatttgtatacatgcatttggaagttggtgccacaatattatcatctgcatgcatgctactacgtcatgtttaccatttcttttttttttctgaacaaatgtttatcatttccaaactgcatgtaaaaatgtttatgcaagtttcttctaccttctcaagtgatttgtagaaaacccaactttttatcttctatagctagaaccatatttagattagaatagcacgttatttttgatatataggaaagtaagatgaaaacactttgttatacctcttgaccagtcaacttttccatgtgggccaggaagcccctctgacgatgtgggccccactccgcagagagatccctgagaggaggtcggcgaagaggagaggtagtagaagggattaggttgtccgttgacgtcatcatcgtcgtcgtcatccgcgtacgaatactcgtgctgcttgtaccctggtaccaacctcacgatctcctgctcgatcatggcggcgatctccgtgggctcccggtcggcgatgtccagctccttcaccatctccgtcgccacctccatcgccgtgtcgttcgccacgtcgaacgggaagtagatgttccgcacgttgccgccgccgccgatctgcaccttgaggaagatggtgtcgtgctccttgttcagcttcccggtgatcgccatgcccgtcgtctttgctgccggcgcctcctcctcctcttgctcctcactggaattactgcacgccaatggcaatggcggtggcggcgcagtggcatgagcaatggtattgtgatcgtcgtggttctgaggcggggagaggaaggggtcgagcaggagctcctcggcagaggggcggtgggcggcgtcgacaaggcaccggccgatgaagcggcgggcgtcggcgtcggtgaggaggtagaaggcgtcggggagcttgccggcggtgaccttcttgtagatctgcgccgggttgtcgcactcgctgtaggggtactcgttggtgagcatctcgagcatgcacatgccgaaggagtagacgtcgacgccgacgccgtagcactcgtcgtacatctcgggggccatgaactccggcgtgccgatgacgctgcgggcggaggtgcagccgcggaggacggcggcgaggccgaggtcgccgatcttgacctggccgaggtggccgttgacgaagatgttgtcgcacttgaggtcgcggtggatgacgccgcgggagtggaggtaggcgaggccgcggaggatggcgcgcgcccaggcggcgacggcgcagcggctgacgcgcgggtagcggaggcggtaggagcggagggtgccggaggagaagagctcggtgatgaagttgaaggtgcggcgggaggggtggacccaggaggcgtggaaggcgatgatggcgtcgtggcggaggtcggcgaggaggctcacctccgcgtacatgcggtggagggcgtccggggtgcggaggacgtcggagatggtggcctggttccacgccacctccaccccccgcagctcgtcgaaccctcggtacaccgtcttcatcgcacccttccccagcacctccgacaactgcacacatattgtatacagtacaaaatttgaacaaatttcgatagaaccgaagtttcggaaattttaggaaatcgaaggccgaaaaggttgaaatttcaacatattttcgttaaagtttttaattaaaatttgcttaattaataaatgtttttcttttcagccaaattaatttcaaattgggggggggggggcgggggcgaaattcctcaagtttctgaaatagtagcagaaagtgcaaagcgaaatattgatccgaaaattctgatatttctgaaatgtcagaaatatgcatgctaacacgtagcgaaataatttatctatatattgtcaagcaagccagactactttattctgaattgacaagtttaattttgattcgaaatgcttcctttcactaaattctaaatattttatacttcgtgcactttaaaaagtttttgaaacaaacatgcttgcatatgtagagaaaatatatacttatagatcatgagcacatggtcagaaaacaatattcttgtgtactgtactactacactagaaagtgcaattaatgaattgcttttcttcaagagaatgcgataaattttatttatttatttatttattgtagtgcgcatttatagtcatcttttaaaatttaattttacatgggatttcaaaatcttatataagttttcttttcataatgttctgaagtgaaaaatgcagattccaaacgggttttgctacagtaatgcctagaaaatctctagtcaaataaaatcaacacttttgagttacgagaaccaatttagcacctcaattaactactctccctaatttagcactaaagaaccagtacttctgatcaaaagttaaaattactatacatataaaaagttaactcaaagtagtggatagttgtcaaatttataaaagtaagacacttttgcaaagctcgcataactacaaataagttgccggtaagtacacctctaaccctagagaaactactgaaaaaaagatgaactaataaagttgccaatacgtcttcaacccactaagaaaaaggtgagaggatcgtatcaaatcgttgggcatgagcatgaccagatagggcatatttcaacatctgattattggcatattgacacatggaacatgcttatctattcagatcaaatccaacatattaggaaacttcaaatgccaaccaaacaacaactctagcttgtttgataaggaacaccttataccttccctgattggattggaagagaaatcataattgaattctcgctcatcatctcaaatttatgatgcacttccgttatttgaccAaatatagaaaaaaacgatgtcatctttcagtacagcaatggcttaggattaataacgaagcctcaaacctgatatgtttcaatgtgcaatactccctccggttctataataattgacgttttggataaggctgaggtcaaacttttataactttgaccatcaatcactttaaaaatatttagtttaaagaaactagaacaacatatatagatttgtcttttaaagcactataataaagtaaacatgcatttatttattttgtatattataatagaaaaataaggttaaagatatattttgtagaccgtgtcgttgtccgaaacgtcaattaaaatgaaaccggatggagtattcaattgtcctatgcagcccatagatagcagcaaaagccaaatggatccgatgaaagtactgaagacacaataattgtgtcttgcatagtttagaggtgttagctccgatgtgtacatcaacatagaatctactctagaaaattatgctaaagaacataaagcctacatgcttttctgaaagagaatgaagccaacatgttttaactgatgcttacaacgtgtattgaaatgtaattactaattaccagcccacatctaaagaacatgatagaactgaacaactaaactcgtgcatgataggcacaatccatgttcaagtagaatcaaaagcaaccaactgatttttcttttcttttgaacgAaaaaaaaagcaatgaactgaattgaccctgaatagctcggaattgcttgctgatcatttggcaatcatgataatattgaactttgaaaggaaacaagtcaaatttctctttggaataagaaagtgagcaagttcagattgcaagaagaagaagtaaataaattacccggccatagcgaccagttgggtcagtctcgacgtatccattcctgttgtcgcccaccaccgaacttctctccgacctccggtcaccgcaccgccgtgcaccggacatgctcggccaccgtcggcgagcaacagcttacttaatcagttgctgtgtatatatgctggagtatatgtggtttcagcctagctgagatcgagtgttaga
More
|
||||||||||
| CDS seq | atgaagacggtgtaccgagggttcgacgagctgcggggggtggaggtggcgtggaaccaggccaccatctccgacgtcctccgcaccccggacgccctccaccgcatgtacgcggaggtgagcctcctcgccgacctccgccacgacgccatcatcgccttccacgcctcctgggtccacccctcccgccgcaccttcaacttcatcaccgagctcttctcctccggcaccctccgctcctaccgcctccgctacccgcgcgtcagccgctgcgccgtcgccgcctgggcgcgcgccatcctccgcggcctcgcctacctccactcccgcggcgtcatccaccgcgacctcaagtgcgacaacatcttcgtcaacggccacctcggccaggtcaagatcggcgacctcggcctcgccgccgtcctccgcggctgcacctccgcccgcagcgtcatcggcacgccggagttcatggcccccgagatgtacgacgagtgctacggcgtcggcgtcgacgtctactccttcggcatgtgcatgctcgagatgctcaccaacgagtacccctacagcgagtgcgacaacccggcgcagatctacaagaaggtcaccgccggcaagctccccgacgccttctacctcctcaccgacgccgacgcccgccgcttcatcggccggtgccttgtcgacgccgcccaccgcccctctgccgaggagctcctgctcgaccccttcctctccccgcctcagaaccacgacgatcacaataccattgctcatgccactgcgccgccaccgccattgccattggcgtgcagtaattccagtgaggagcaagaggaggaggaggcgccggcagcaaagacgacgggcatggcgatcaccgggaagctgaacaaggagcacgacaccatcttcctcaaggtgcagatcggcggcggcggcaacgtgcggaacatctacttcccgttcgacgtggcgaacgacacggcgatggaggtggcgacggagatggtgaaggagctggacatcgccgaccgggagcccacggagatcgccgccatgatcgagcaggagatcgtgaggttggtaccagggtacaagcagcacgagtattcgtacgcggatgacgacgacgatgatgacgtcaacggacaacctaatcccttctactacctctcctcttcgccgacctcctctcagggatctctctgcggagtggggcccacatcgtcagaggggcttcctggcccacatggaaaagttgactggtcaagagattactgttactaccctccaagcagcgtcagcgtgagcgacgacgatgacagcagcacgagctcactctctgctgcagtcagcgcaatcagcctgcagcagcagcattgttcggcctcttccagcagattggggccagcatctgcatctgcatctgaagacggaggaggacacgccggacggccacggcagcgagagggggaggaggagcggcggcggaggaggatgagtcggaacaggtcgatggtggacatgcggagccagctcctgcacaggacgctggtggaggagctcaacaagcgcctcttcttcaacaccgtcggcgccgtccacgacatcggcttccgcgaccctactacttacggatcgtcgtcgtcgtcttcttcgtcacagcatcgccgGagaagcagcagcaaggtcgaccacaagcaccactacatgttctga
More
|
||||||||||
| Protein seq | MKTVYRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRRTFNFITELFSSGTLRSYRLRYPRVSRCAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHLGQVKIGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSECDNPAQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHNTIAHATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNIYFPFDVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVNGQPNPFYYLSSSPTSSQGSLCGVGPTSSEGLPGPHGKVDWSRDYCYYPPSSVSVSDDDDSSTSSLSAAVSAISLQQQHCSASSSRLGPASASASEDGGGHAGRPRQREGEEERRRRRMSRNRSMVDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFRDPTTYGSSSSSSSSQHRRRSSSKVDHKHHYMF |
||||||||||
| Function | Probable serine/threonine-protein kinase WNK8 [UniProtKB/Swiss-Prot:Q2QYL8] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001110 | OsNaBo_12g0001110.01 | Chr12 | 769547 | 772170 | - | NAM | ||
| CDS seq | atgaagacggtgtaccgagggttcgacgagctgcggggggtggaggtggcgtggaaccaggccaccatctccgacgtcctccgcaccccggacgccctccaccgcatgtacgcggaggtgagcctcctcgccgacctccgccacgacgccatcatcgccttccacgcctcctgggtccacccctcccgccgcaccttcaacttcatcaccgagctcttctcctccggcaccctccgctcctaccgcctccgctacccgcgcgtcagccgctgcgccgtcgccgcctgggcgcgcgccatcctccgcggcctcgcctacctccactcccgcggcgtcatccaccgcgacctcaagtgcgacaacatcttcgtcaacggccacctcggccaggtcaagatcggcgacctcggcctcgccgccgtcctccgcggctgcacctccgcccgcagcgtcatcggcacgccggagttcatggcccccgagatgtacgacgagtgctacggcgtcggcgtcgacgtctactccttcggcatgtgcatgctcgagatgctcaccaacgagtacccctacagcgagtgcgacaacccggcgcagatctacaagaaggtcaccgccggcaagctccccgacgccttctacctcctcaccgacgccgacgcccgccgcttcatcggccggtgccttgtcgacgccgcccaccgcccctctgccgaggagctcctgctcgaccccttcctctccccgcctcagaaccacgacgatcacaataccattgctcatgccactgcgccgccaccgccattgccattggcgtgcagtaattccagtgaggagcaagaggaggaggaggcgccggcagcaaagacgacgggcatggcgatcaccgggaagctgaacaaggagcacgacaccatcttcctcaaggtgcagatcggcggcggcggcaacgtgcggaacatctacttcccgttcgacgtggcgaacgacacggcgatggaggtggcgacggagatggtgaaggagctggacatcgccgaccgggagcccacggagatcgccgccatgatcgagcaggagatcgtgaggttggtaccagggtacaagcagcacgagtattcgtacgcggatgacgacgacgatgatgacgtcaacggacaacctaatcccttctactacctctcctcttcgccgacctcctctcagggatctctctgcggagtggggcccacatcgtcagaggggcttcctggcccacatggaaaagttgactggtcaagagattactgttactaccctccaagcagcgtcagcgtgagcgacgacgatgacagcagcacgagctcactctctgctgcagtcagcgcaatcagcctgcagcagcagcattgttcggcctcttccagcagattggggccagcatctgcatctgcatctgaagacggaggaggacacgccggacggccacggcagcgagagggggaggaggagcggcggcggaggaggatgagtcggaacaggtcgatggtggacatgcggagccagctcctgcacaggacgctggtggaggagctcaacaagcgcctcttcttcaacaccgtcggcgccgtccacgacatcggcttccgcgaccctactacttacggatcgtcgtcgtcgtcttcttcgtcacagcatcgccgGagaagcagcagcaaggtcgaccacaagcaccactacatgttctga
More
|
|||||||
| Protein seq | MKTVYRGFDELRGVEVAWNQATISDVLRTPDALHRMYAEVSLLADLRHDAIIAFHASWVHPSRRTFNFITELFSSGTLRSYRLRYPRVSRCAVAAWARAILRGLAYLHSRGVIHRDLKCDNIFVNGHLGQVKIGDLGLAAVLRGCTSARSVIGTPEFMAPEMYDECYGVGVDVYSFGMCMLEMLTNEYPYSECDNPAQIYKKVTAGKLPDAFYLLTDADARRFIGRCLVDAAHRPSAEELLLDPFLSPPQNHDDHNTIAHATAPPPPLPLACSNSSEEQEEEEAPAAKTTGMAITGKLNKEHDTIFLKVQIGGGGNVRNIYFPFDVANDTAMEVATEMVKELDIADREPTEIAAMIEQEIVRLVPGYKQHEYSYADDDDDDDVNGQPNPFYYLSSSPTSSQGSLCGVGPTSSEGLPGPHGKVDWSRDYCYYPPSSVSVSDDDDSSTSSLSAAVSAISLQQQHCSASSSRLGPASASASEDGGGHAGRPRQREGEEERRRRRMSRNRSMVDMRSQLLHRTLVEELNKRLFFNTVGAVHDIGFRDPTTYGSSSSSSSSQHRRRSSSKVDHKHHYMF
More
|
|||||||
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0001110 | OsNaBo_12g0001110.02 | Chr12 | 769345 | 774607 | - | IsoSeq | ||
| CDS seq | atgacgacgacgatgatgacgtcaacggacaacctaatcccttctactacctctcctcttcgccgacctcctctcagggatctctctgcggagtggggcccacatcgtcagaggggcttcctggcccacatggaaaagttgactggtcaagagattactgttactaccctccaagcagcgtca |
|||||||
| Protein seq | MTTTMMTSTDNLIPSTTSPLRRPPLRDLSAEWGPHRQRGFLAHMEKLTGQEITVTTLQAAS |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 2.246902 | 15.661411 | 9.033744 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0114100 | RBH | 2.750762 | 3.409688 | 3.248526 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g02250 | RBH | 1.725776 | 2.081595 | 0.728249 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0114100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000900 | RBH | 1.796623 | 7.748451 | 6.032351 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0001100 | RBH | 0.994754 | 0.947077 | 1.455169 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0001080 | RBH | 2.253956 | 8.690013 | 5.222028 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000920 | RBH | 0.371712 | 0.157788 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0001030 | SBH | 11.696715 | 2.561283 | 15.097278 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0012600 | SBH | 28.282959 | 81.6857035 | 24.1045845 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0001030 | SBH | 0.785377 | 1.089204 | 0.610176 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0014600 | SBH | 10.758228 | 17.321177 | 0.2882905 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000910 | RBH | 0.624472 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0001030 | SBH | 1.068787 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0001030 | SBH | 14.708450 | 11.289748 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0001030 | RBH | 0.605364 | 0.0 | 1.879484 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0001030 | RBH | 0.503182 | 0.000000 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000950 | RBH | 1.051263 | 1.175697 | 2.288175 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0001020 | RBH | 2.762064 | 25.944332 | 6.064838 |
