Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0000700 | OGI:12001100 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:536610-539646 | ||||||||
| Gene Symbol | OsPP123 | ||||||||||
| DNA seq | atcgatgcacatccgtcgtcattaatggccgatggatggggtgcctgatgcccaacgcacaacatcaccatcaatgataaaacaacaaaactacttcaaccacccctacgcattcaactccattctactctctaCcccctccttccttccttccttccttccttcctagctacctctacgaagtaccagcagcagaagaagcaatggggatctgctgcagcaaggggaaggaggagcttgaggaggagggatttccatggaagcacgacgccttcttccacgaccagctttggagcgctggcgtctccatgcacaccaagcaaggctggaagggtgctaaccaggatgccatgactacctgccaggtaaccacatctctcttgcattggattgcttgctcatcacttgctgcctcattgtttccatgtttgttccagtcctcctttgcttcttgtctgtacagattctctcattttgatattatagtatcatgtactacacaagccgagtctctagccatggaggaatggggtaatgctagtctagaaaggggctatgtttgcctactacaacttcaattcagggcatgatttgactttgaacaccatacactagattcatccctgctctgctgtgctgaaactgattttttctttgtagcctgagctgtacctgcatttctgtaatagcctgtatttagttcaaatcttcaactagacctgattgcttgctcttgcatgtttgttcagtgctgcttagcttcttgtctgtgcaaattccctcatctttgtggtattatgtacacaagctaaagctagccatggagggtatagggtagtgctagtaaggggctttgattagctactacaaactgaattcagaacatgatttgagcaccgtgcactagattcatctctgcttttgctgaaactgaaaaatgtacctacatttctgtaatatttacttcaactgcacctgaatctctctagcttccacctccaatgccagtacatttcccttttccccttgatgtgcacattttacttaatatatatgtaagataatctgggtcttgatgtgctacctgtgtcaagtttattaggactttgcggggcacaagggccagatattttgtggagtttttgatgggcatggccctctcggaagggaagttgctcgccatgtccgcgacgtccttccaatgaaactatcctcctctttggcactgaaaactgaacaagatccatccagcaacacagataaggaagccttggaaaaatcagattgcacctcattgagcgatacaagcaatgagaagcaattgttatccacctggaagaacatatttgtcaagacatttgaggatgtagatgatgatctgagacaaaattctggaattgactgcatttgtagtggcacaactgctgtcactgtcgtcaggcaggtactagtactacaactatgcaaaattgcaacatttttttgtattgccaatagtcttgcctatgtactagaaatacaccatttctgcctaaaaaacaagcttctgaaaccctcagatgcaacaaagatacttgccgaattttatgtgtatgttacagctatacttgtgcctaaatacagaactctcaaactcgtaatcattctgtttaaattctcagctactgttcttatacacagggtgatcacttgatcattgcaaatttgggcgattcacgtgcggttctttgcacccgagatagcaaggaccgcccaattccagttcaactaaccactgacctgaaaccaaatcttccaagtaaccctctgaatttctcaaagtacagagatgtctaaatttagacattcacttgtcattcatatgggggcttctgacaggcgaagctgagagaatcctgaattgtaaggggcgggttttcgccatggacgacgagccggacgtgtctaggatgtggctaccaaaccaagacgcgccgggcctcgccatggcaagggcatttggagatttctgcttgaagagtcatggacttatctgtacaccagaagtctattacaggaagctatccgaaaaagatgaattcttggtacttgctactgacggggtaagAaaaaaataaagacttttgtctgatgatggtagccaaattcagtttcatttactcaccatctttccataatcaagagtaacttttctcttggttgtttcactactagtactagaaatgaaatgagcacaaagttaatagtgcaaaaccagaaaagcgacagttaactgaatcatgaatgcctttgcctcaatcaatcaatcgaattgttttttttaaagataatgcaaccaatcaaattgatgtgggtgcagatatgggacgtgctatcgaacaaggaagtgatcaagatcgtatcgtcggctactgaccattccaaggccgccaagcagctggtcgagcgggcggtgcgcgcgtggcggcgcaagttcccgacgtcaatggtcgacgactgcgccgtcgtctgcctcttcttgaagccttctccgtcgtcggaggagagcacccatgtagacgcgaaggcgcctcaggtcgtgtcgttcacgggcagcttccgcaaggccctgggtggtggcggcggcggcgaggcggaggagggtacgaatgtatggagagctctggagggggtggctcgggtgaactcggtggtgaggctgccgcggatggacgccgtgctgagctggcggcggcggtcgacgtcgctcgaggaagacgacgatgcgaggattgattgataacagtcgctttcgttgctggaaaacgtaatccagagggtttgattacatgctttaaatggcaaaaaattagggagacgctttagaagttgattgacgtaaacgtatgtcgcattcaggttgttgagttggaatagggaccgatactgctgctgctatcctccctctcttgcttaacttgattgtagtagctgaaaatgattggctagctgttttggatgtggtggcctttgtttgatttattgtgattcttccttc
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| CDS seq | atggggatctgctgcagcaaggggaaggaggagcttgaggaggagggatttccatggaagcacgacgccttcttccacgaccagctttggagcgctggcgtctccatgcacaccaagcaaggctggaagggtgctaaccaggatgccatgactacctgccaggactttgcggggcacaagggccagatattttgtggagtttttgatgggcatggccctctcggaagggaagttgctcgccatgtccgcgacgtccttccaatgaaactatcctcctctttggcactgaaaactgaacaagatccatccagcaacacagataaggaagccttggaaaaatcagattgcacctcattgagcgatacaagcaatgagaagcaattgttatccacctggaagaacatatttgtcaagacatttgaggatgtagatgatgatctgagacaaaattctggaattgactgcatttgtagtggcacaactgctgtcactgtcgtcaggcagggtgatcacttgatcattgcaaatttgggcgattcacgtgcggttctttgcacccgagatagcaaggaccgcccaattccagttcaactaaccactgacctgaaaccaaatcttccaagcgaagctgagagaatcctgaattgtaaggggcgggttttcgccatggacgacgagccggacgtgtctaggatgtggctaccaaaccaagacgcgccgggcctcgccatggcaagggcatttggagatttctgcttgaagagtcatggacttatctgtacaccagaagtctattacaggaagctatccgaaaaagatgaattcttggtacttgctactgacgggatatgggacgtgctatcgaacaaggaagtgatcaagatcgtatcgtcggctactgaccattccaaggccgccaagcagctggtcgagcgggcggtgcgcgcgtggcggcgcaagttcccgacgtcaatggtcgacgactgcgccgtcgtctgcctcttcttgaagccttctccgtcgtcggaggagagcacccatgtagacgcgaaggcgcctcaggtcgtgtcgttcacgggcagcttccgcaaggccctgggtggtggcggcggcggcgaggcggaggagggtacgaatgtatggagagctctggagggggtggctcgggtgaactcggtggtgaggctgccgcggatggacgccgtgctgagctggcggcggcggtcgacgtcgctcgaggaagacgacgatgcgaggattgattga
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| Protein seq | MGICCSKGKEELEEEGFPWKHDAFFHDQLWSAGVSMHTKQGWKGANQDAMTTCQDFAGHKGQIFCGVFDGHGPLGREVARHVRDVLPMKLSSSLALKTEQDPSSNTDKEALEKSDCTSLSDTSNEKQLLSTWKNIFVKTFEDVDDDLRQNSGIDCICSGTTAVTVVRQGDHLIIANLGDSRAVLCTRDSKDRPIPVQLTTDLKPNLPSEAERILNCKGRVFAMDDEPDVSRMWLPNQDAPGLAMARAFGDFCLKSHGLICTPEVYYRKLSEKDEFLVLATDGIWDVLSNKEVIKIVSSATDHSKAAKQLVERAVRAWRRKFPTSMVDDCAVVCLFLKPSPSSEESTHVDAKAPQVVSFTGSFRKALGGGGGGEAEEGTNVWRALEGVARVNSVVRLPRMDAVLSWRRRSTSLEEDDDARID |
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| Function | Probable protein phosphatase 2C 73 [UniProtKB/Swiss-Prot:Q2RBJ6] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0000700 | OsNaBo_12g0000700.01 | Chr12 | 536610 | 539646 | + | NAM | ||
| CDS seq | atggggatctgctgcagcaaggggaaggaggagcttgaggaggagggatttccatggaagcacgacgccttcttccacgaccagctttggagcgctggcgtctccatgcacaccaagcaaggctggaagggtgctaaccaggatgccatgactacctgccaggactttgcggggcacaagggccagatattttgtggagtttttgatgggcatggccctctcggaagggaagttgctcgccatgtccgcgacgtccttccaatgaaactatcctcctctttggcactgaaaactgaacaagatccatccagcaacacagataaggaagccttggaaaaatcagattgcacctcattgagcgatacaagcaatgagaagcaattgttatccacctggaagaacatatttgtcaagacatttgaggatgtagatgatgatctgagacaaaattctggaattgactgcatttgtagtggcacaactgctgtcactgtcgtcaggcagggtgatcacttgatcattgcaaatttgggcgattcacgtgcggttctttgcacccgagatagcaaggaccgcccaattccagttcaactaaccactgacctgaaaccaaatcttccaagcgaagctgagagaatcctgaattgtaaggggcgggttttcgccatggacgacgagccggacgtgtctaggatgtggctaccaaaccaagacgcgccgggcctcgccatggcaagggcatttggagatttctgcttgaagagtcatggacttatctgtacaccagaagtctattacaggaagctatccgaaaaagatgaattcttggtacttgctactgacgggatatgggacgtgctatcgaacaaggaagtgatcaagatcgtatcgtcggctactgaccattccaaggccgccaagcagctggtcgagcgggcggtgcgcgcgtggcggcgcaagttcccgacgtcaatggtcgacgactgcgccgtcgtctgcctcttcttgaagccttctccgtcgtcggaggagagcacccatgtagacgcgaaggcgcctcaggtcgtgtcgttcacgggcagcttccgcaaggccctgggtggtggcggcggcggcgaggcggaggagggtacgaatgtatggagagctctggagggggtggctcgggtgaactcggtggtgaggctgccgcggatggacgccgtgctgagctggcggcggcggtcgacgtcgctcgaggaagacgacgatgcgaggattgattga
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| Protein seq | MGICCSKGKEELEEEGFPWKHDAFFHDQLWSAGVSMHTKQGWKGANQDAMTTCQDFAGHKGQIFCGVFDGHGPLGREVARHVRDVLPMKLSSSLALKTEQDPSSNTDKEALEKSDCTSLSDTSNEKQLLSTWKNIFVKTFEDVDDDLRQNSGIDCICSGTTAVTVVRQGDHLIIANLGDSRAVLCTRDSKDRPIPVQLTTDLKPNLPSEAERILNCKGRVFAMDDEPDVSRMWLPNQDAPGLAMARAFGDFCLKSHGLICTPEVYYRKLSEKDEFLVLATDGIWDVLSNKEVIKIVSSATDHSKAAKQLVERAVRAWRRKFPTSMVDDCAVVCLFLKPSPSSEESTHVDAKAPQVVSFTGSFRKALGGGGGGEAEEGTNVWRALEGVARVNSVVRLPRMDAVLSWRRRSTSLEEDDDARID
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0108600 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01770 | RBH | 0.0 | 0.0 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0108600 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000510 | RBH | 0.0 | 0.0 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000700 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000670 | RBH | 0.0 | 0.0 | 0.384940 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000530 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000630 | RBH | 0.587133 | 0.0 | 0.657801 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0007100 | RBH | 1.726716 | 13.1850955 | 4.9716485 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000600 | RBH | 0.0 | 0.0 | 0.143391 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0007400 | RBH | 1.8100385 | 0.06032 | 6.4259005 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_12g0000520 | RBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000630 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000630 | RBH | 1.370411 | 7.334249 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000640 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000650 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000540 | RBH | 0.0 | 0.0 | 0.719138 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000640 | RBH | 0.0 | 0.0 | 0.000000 |
