Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_12g0000590 | OGI:12001010 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr12:487345-490631 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgctcagaccattccccgccaccgcccaccatcgctgcacacttctcctcctccttactgtaacactcctcccctcgctcgctgccgccgccgccgcccaccaccaccacctccacgaccacgccgcaggcgacggcgtcgtcatcagccaggcggattaccagggcctacaggccatcaagcacgacctcaccgacccctacgccttcctccgctcctggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccagggcaaggtcgtcgccatcaccctcccatggcgcggcctcgccggcactctctccgagcgcatcggccagctcacccagctccgccgcctcagcctccacgacaacgccatctccggccccatccccacctccctcggcttcctccccgacctccgcggcgtctacctcttcaacaaccgcttctccggcgccgttcccgcttccattggcaactgcgtcgcgctccaggcgtttgatgccagcaacaacctcctcaccggcgccattcctccttccctcgccaactccaccaagctcatgcgcctcaacctcagccacaacaccatctccggcgacatcccatccgagctcgccgcctcgccctcgctcgtcttcctctccctctcgcacaacaagctgtccggccacatcccagacaccttcgctggctccagggcgccctcctcctcctcgctcaaggaatccatcaccgggacctacaacctcgccgtcctcgagctctcgcacaattcgctcgatggccagataccgcagtcactcgccggcctccagaagctgcaggtgatggacctctccggcaacaggctcaacggcaccatccccgacaggctcggctcgctcgccgacctcaagacgctcgacctctccggcaacgccctcaccggcgagatcccggccagcctgtccaacctcaccaccactctccaagcattcaatgtctccaacaacaacctctccggccaagtgccagcctcgctcgcgcagaaattcgggccttccgccttcgccggaaacatccagctctgcggctactctgtatccgtgccctgcccggcgtcgccgtctccggcgccatctgcgccagcatcaccagtgcaaGgggtggagaccacaggacgccaccggaagttcacgaccaaggagctcgcgctgatcatcgccggaatcgtggtcggcatcctgctcttgctggcgctctgctgcctgctgctctgtttcttgacgaagaagaggtccggaagcggcgggaagcagacgacgagcagcaaggcagccggtggcggcgccggaggcgcggcGgggggcgggcgaggcgagaagccggggtcgggggcggcggaggtggagtcggggggagaggtgggagggaagctggtgcacttcgacgggccgatggcgttcacggcggacgacctgctgtgcgcgacggcggagataatggggaagagcacgtacgggacggtgtacaaggcgacgctggaggacggcagcctcgtggcggtgaagcggctgagggagaagatcaccaagggacacaaggacttcgagtcagaggtggcggtgctcggcaagatccgccaccccaacctgctgcctctcagggcctactacctcggacccaagggcgagaagctcctcgtcctcgacttcatgcccaatggcagcctctcccagttcctccacggtcagtactcactcactcactactcttcttcttgtgcatttgatcttgatactattaattaggaagacaatgcaattggtaaactgtatgcattctaaagcttttacttctgctttcaactgaaactactctgaacatttgagaaaacgttgtagtctgaacatttgcaaattctggaagtgctaacactgattcagctgaaatcaagtagatttgatacatctgaaaattttgtacagtgctgagtaccttttttatttagcataacaatgagcatcccatgccaatttagagattgagcattacacgccttctgaaaattttggacagcgctacatgtcttcatggtcaatgcaaaaagttcagtaaaagagtgtcttgttcagttaaacaagttaacatattccctatgtagttttgaggctaatatgtggactattggtgaactaaatgacaggcttttgttttagtagcactgttttatcaacattattcagctttctggctctgaaatttcatcctgatgaactgaaaatctgcataactctgacacggtgacactaacatttcgtcctgatggcataacgtgaatgtgcagctcgcgcgcccaacactccgatcagctgggagacgcggatgacgatcgccaagggcacagcccgtggcctggctttcctccacgacgacatgaccatcgtccacggcaacctcaccgccagcaatgtcctcctcgacgaccactccaaccccaagatcgccgacttcggcctctcccgcctcatgacaactgctgccaactccaacgtcctcgccgccgccggcgccctcggctaccgcgcccccgagctgtccaagctcaagaaggccagtgccaagaccgacgtgtacagcctcggcgtcatcatcctcgagctcctcaccggcaaatcccccgccgagaccaccaacggcatggacctgccgcagtgggtggcgtccattgtcaaggaggagtggaccagcgaggtgttcgacctcgagctgatgcgcgacggcgacaatgggcccgcgggcgacgagctcgtggacacgctgaagctggcgctgcactgcgtggaccagtcgccgtcggtgagacctgatgcccgggaggtgctccggcagctcgagcagatcaggccggggccggagggcggcgccgggccgagcgacgaaggtggcgcagggcatgtggctgctgcttctgcaggcaatgagtagtatgcagcagctgtgctcttgagcagaatttgaagacgaaatcgaaggaaatgaacttgtcaatcagctagagactagaaacagagcagctagagagtagaaacagagatactcctatatttcatttatgaattctttgatttatttgaaagcttagtagtagtagtattagtaagtggtagacattattcgtctatgttgtttttgaagcttcttgtataggcaaatattattatttgcaacagaactgaatcgctctatcagaatatcaattacaaataccacaatgccttccttactgatc
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| CDS seq | atgctcagaccattccccgccaccgcccaccatcgctgcacacttctcctcctccttactgtaacactcctcccctcgctcgctgccgccgccgccgcccaccaccaccacctccacgaccacgccgcaggcgacggcgtcgtcatcagccaggcggattaccagggcctacaggccatcaagcacgacctcaccgacccctacgccttcctccgctcctggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccagggcaaggtcgtcgccatcaccctcccatggcgcggcctcgccggcactctctccgagcgcatcggccagctcacccagctccgccgcctcagcctccacgacaacgccatctccggccccatccccacctccctcggcttcctccccgacctccgcggcgtctacctcttcaacaaccgcttctccggcgccgttcccgcttccattggcaactgcgtcgcgctccaggcgtttgatgccagcaacaacctcctcaccggcgccattcctccttccctcgccaactccaccaagctcatgcgcctcaacctcagccacaacaccatctccggcgacatcccatccgagctcgccgcctcgccctcgctcgtcttcctctccctctcgcacaacaagctgtccggccacatcccagacaccttcgctggctccagggcgccctcctcctcctcgctcaaggaatccatcaccgggacctacaacctcgccgtcctcgagctctcgcacaattcgctcgatggccagataccgcagtcactcgccggcctccagaagctgcaggtgatggacctctccggcaacaggctcaacggcaccatccccgacaggctcggctcgctcgccgacctcaagacgctcgacctctccggcaacgccctcaccggcgagatcccggccagcctgtccaacctcaccaccactctccaagcattcaatgtctccaacaacaacctctccggccaagtgccagcctcgctcgcgcagaaattcgggccttccgccttcgccggaaacatccagctctgcggctactctgtatccgtgccctgcccggcgtcgccgtctccggcgccatctgcgccagcatcaccagtgcaaGgggtggagaccacaggacgccaccggaagttcacgaccaaggagctcgcgctgatcatcgccggaatcgtggtcggcatcctgctcttgctggcgctctgctgcctgctgctctgtttcttgacgaagaagaggtccggaagcggcgggaagcagacgacgagcagcaaggcagccggtggcggcgccggaggcgcggcGgggggcgggcgaggcgagaagccggggtcgggggcggcggaggtggagtcggggggagaggtgggagggaagctggtgcacttcgacgggccgatggcgttcacggcggacgacctgctgtgcgcgacggcggagataatggggaagagcacgtacgggacggtgtacaaggcgacgctggaggacggcagcctcgtggcggtgaagcggctgagggagaagatcaccaagggacacaaggacttcgagtcagaggtggcggtgctcggcaagatccgccaccccaacctgctgcctctcagggcctactacctcggacccaagggcgagaagctcctcgtcctcgacttcatgcccaatggcagcctctcccagttcctccacggtcatgccaagaccgacgtgtacagcctcggcgtcatcatcctcgagctcctcaccggcaaatcccccgccgagaccaccaacggcatggacctgccgcagtgggtggcgtccattgtcaaggaggagtggaccagcgaggtgttcgacctcgagctgatgcgcgacggcgacaatgggcccgcgggcgacgagctcgtggacacgctgaagctggcgctgcactgcgtggaccagtcgccgtcggtgagacctgatgcccgggaggtgctccggcagctcgagcagatcaggccggggccggagggcggcgccgggccgagcgacgaaggtggcgcagggcatgtggctgctgcttctgcaggcaatgagtag
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| Protein seq | MLRPFPATAHHRCTLLLLLTVTLLPSLAAAAAAHHHHLHDHAAGDGVVISQADYQGLQAIKHDLTDPYAFLRSWNDTGLGACSGAWVGIKCVQGKVVAITLPWRGLAGTLSERIGQLTQLRRLSLHDNAISGPIPTSLGFLPDLRGVYLFNNRFSGAVPASIGNCVALQAFDASNNLLTGAIPPSLANSTKLMRLNLSHNTISGDIPSELAASPSLVFLSLSHNKLSGHIPDTFAGSRAPSSSSLKESITGTYNLAVLELSHNSLDGQIPQSLAGLQKLQVMDLSGNRLNGTIPDRLGSLADLKTLDLSGNALTGEIPASLSNLTTTLQAFNVSNNNLSGQVPASLAQKFGPSAFAGNIQLCGYSVSVPCPASPSPAPSAPASPVQGVETTGRHRKFTTKELALIIAGIVVGILLLLALCCLLLCFLTKKRSGSGGKQTTSSKAAGGGAGGAAGGGRGEKPGSGAAEVESGGEVGGKLVHFDGPMAFTADDLLCATAEIMGKSTYGTVYKATLEDGSLVAVKRLREKITKGHKDFESEVAVLGKIRHPNLLPLRAYYLGPKGEKLLVLDFMPNGSLSQFLHGHAKTDVYSLGVIILELLTGKSPAETTNGMDLPQWVASIVKEEWTSEVFDLELMRDGDNGPAGDELVDTLKLALHCVDQSPSVRPDAREVLRQLEQIRPGPEGGAGPSDEGGAGHVAAASAGNE |
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| Function | Probable leucine-rich repeat receptor-like protein kinase IMK3 [UniProtKB/Swiss-Prot:C0LGP9] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_12g0000590 | OsNaBo_12g0000590.01 | Chr12 | 487345 | 490631 | + | NAM | ||
| CDS seq | atgctcagaccattccccgccaccgcccaccatcgctgcacacttctcctcctccttactgtaacactcctcccctcgctcgctgccgccgccgccgcccaccaccaccacctccacgaccacgccgcaggcgacggcgtcgtcatcagccaggcggattaccagggcctacaggccatcaagcacgacctcaccgacccctacgccttcctccgctcctggaacgacaccggcctcggcgcctgctccggcgcatgggtcggcatcaagtgcgtccagggcaaggtcgtcgccatcaccctcccatggcgcggcctcgccggcactctctccgagcgcatcggccagctcacccagctccgccgcctcagcctccacgacaacgccatctccggccccatccccacctccctcggcttcctccccgacctccgcggcgtctacctcttcaacaaccgcttctccggcgccgttcccgcttccattggcaactgcgtcgcgctccaggcgtttgatgccagcaacaacctcctcaccggcgccattcctccttccctcgccaactccaccaagctcatgcgcctcaacctcagccacaacaccatctccggcgacatcccatccgagctcgccgcctcgccctcgctcgtcttcctctccctctcgcacaacaagctgtccggccacatcccagacaccttcgctggctccagggcgccctcctcctcctcgctcaaggaatccatcaccgggacctacaacctcgccgtcctcgagctctcgcacaattcgctcgatggccagataccgcagtcactcgccggcctccagaagctgcaggtgatggacctctccggcaacaggctcaacggcaccatccccgacaggctcggctcgctcgccgacctcaagacgctcgacctctccggcaacgccctcaccggcgagatcccggccagcctgtccaacctcaccaccactctccaagcattcaatgtctccaacaacaacctctccggccaagtgccagcctcgctcgcgcagaaattcgggccttccgccttcgccggaaacatccagctctgcggctactctgtatccgtgccctgcccggcgtcgccgtctccggcgccatctgcgccagcatcaccagtgcaaGgggtggagaccacaggacgccaccggaagttcacgaccaaggagctcgcgctgatcatcgccggaatcgtggtcggcatcctgctcttgctggcgctctgctgcctgctgctctgtttcttgacgaagaagaggtccggaagcggcgggaagcagacgacgagcagcaaggcagccggtggcggcgccggaggcgcggcGgggggcgggcgaggcgagaagccggggtcgggggcggcggaggtggagtcggggggagaggtgggagggaagctggtgcacttcgacgggccgatggcgttcacggcggacgacctgctgtgcgcgacggcggagataatggggaagagcacgtacgggacggtgtacaaggcgacgctggaggacggcagcctcgtggcggtgaagcggctgagggagaagatcaccaagggacacaaggacttcgagtcagaggtggcggtgctcggcaagatccgccaccccaacctgctgcctctcagggcctactacctcggacccaagggcgagaagctcctcgtcctcgacttcatgcccaatggcagcctctcccagttcctccacggtcatgccaagaccgacgtgtacagcctcggcgtcatcatcctcgagctcctcaccggcaaatcccccgccgagaccaccaacggcatggacctgccgcagtgggtggcgtccattgtcaaggaggagtggaccagcgaggtgttcgacctcgagctgatgcgcgacggcgacaatgggcccgcgggcgacgagctcgtggacacgctgaagctggcgctgcactgcgtggaccagtcgccgtcggtgagacctgatgcccgggaggtgctccggcagctcgagcagatcaggccggggccggagggcggcgccgggccgagcgacgaaggtggcgcagggcatgtggctgctgcttctgcaggcaatgagtag
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| Protein seq | MLRPFPATAHHRCTLLLLLTVTLLPSLAAAAAAHHHHLHDHAAGDGVVISQADYQGLQAIKHDLTDPYAFLRSWNDTGLGACSGAWVGIKCVQGKVVAITLPWRGLAGTLSERIGQLTQLRRLSLHDNAISGPIPTSLGFLPDLRGVYLFNNRFSGAVPASIGNCVALQAFDASNNLLTGAIPPSLANSTKLMRLNLSHNTISGDIPSELAASPSLVFLSLSHNKLSGHIPDTFAGSRAPSSSSLKESITGTYNLAVLELSHNSLDGQIPQSLAGLQKLQVMDLSGNRLNGTIPDRLGSLADLKTLDLSGNALTGEIPASLSNLTTTLQAFNVSNNNLSGQVPASLAQKFGPSAFAGNIQLCGYSVSVPCPASPSPAPSAPASPVQGVETTGRHRKFTTKELALIIAGIVVGILLLLALCCLLLCFLTKKRSGSGGKQTTSSKAAGGGAGGAAGGGRGEKPGSGAAEVESGGEVGGKLVHFDGPMAFTADDLLCATAEIMGKSTYGTVYKATLEDGSLVAVKRLREKITKGHKDFESEVAVLGKIRHPNLLPLRAYYLGPKGEKLLVLDFMPNGSLSQFLHGHAKTDVYSLGVIILELLTGKSPAETTNGMDLPQWVASIVKEEWTSEVFDLELMRDGDNGPAGDELVDTLKLALHCVDQSPSVRPDAREVLRQLEQIRPGPEGGAGPSDEGGAGHVAAASAGNE
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.632139 | 0.523733 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_12g0107700 | SBH | 0.0 | 0.0 | 0.747364 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os12g01700 | SBH | 0.0 | 0.0 | 0.171121 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os12g0107700 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_12g0000420 | SBH | 0.0 | 5.833754 | 0.656125 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_12g0000610 | SBH | 0.0 | 2.001128 | 0.236291 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_12g0000580 | SBH | 0.0 | 4.950852 | 0.858000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_12g0000440 | SBH | 0.0 | 0.168642 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_12g0000540 | RBH | 0.0 | 3.923426 | 2.239989 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_12G0006300 | RBH | 1.143473 | 0.404348 | 0.447391 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_12g0000510 | RBH | 0.0 | 0.231980 | 0.050928 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_12G0006600 | SBH | 1.0752225 | 0.0054415 | 2.8783265 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0000420 | SBH | 0.0 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_12g0000540 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_12g0000540 | RBH | 0.0 | 11.648468 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_12g0000550 | SBH | 0.068372 | 0.0 | 0.170783 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_12g0000560 | RBH | 0.0 | 2.947822 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_12G000450 | RBH | 0.0 | 2.385307 | 1.112314 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0000550 | RBH | 0.0 | 6.759808 | 0.535465 |
