Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0023390 | OGI:11004300 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:29168378-29172117 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgcaagatgtgcaggtatagagcaactgttacgttcactttttcagacattcagtgcaatgtgccatgggtactgtttactatgtaatttggccatgtgatgacatgtacttagtgtgtgcctttcccattatcatgagAaaaATTAGCGTAATGACAACCTTGGTTAAAAAGATTGGTCATATTGTAAGAACCAAAATTACATGCAGTAGTACTTAGCTCCTGTACAGATCTAGTAGTTTTCACCTTTCATAGTTTATTTCAGTCTAGACTGTACTAAGAGATGTTATTTAATGTAGATATGTATTTTATTTCTTCTTCCTCCTATAGTTAATTAGTAATGGTAATTTATTCCTTCTCTTGTGTGTGACAGTTTTTTTTTAGAGAACTTGTGTGTGACAGTTGTGAACCACATCCACCTCGAATGGCAAATTCAAGGCTTAGCACAGTTTCTTCATGGCTACCAATAGGGTAAGTGACTTTAACTTGCTTGTTAATAAGTTTGTTGTCGTTGGAATAAATTTGGTTGATAGATTGATAGACAACTGCAATGTTCATCCACAGGATGGACCCCATAGCTACATATTTGTTGGAAATTAAACTAGCGGGGGATCGAAAAAATGCTAGGGTGGAATATGATTGGTTTATATTCAATAAGGTGGTAGACTCAAATGTATTACGCTACAAAGACTTTGTTGATGGCATTGCAAAGTCATATCCATGGGGGCCAAATGAGACTGTTACAATTGGTTACATGGATTTGGgttggtaaaacctctcatcatgtcaaaactgatcaggacatgatagcaatgtttgaaaagttcattgatatcaaggtgattccaatgattattcgtatacatggtattgatgaaaatattgatgagttagaccacactcttgataaagtaaacatagacgtgttcgatactccttctttggcaattcccactcaagtggatttcagccaatctagcagcagcactcaaccttctcgtgtcactgtgccatccaacacatacttagtaaacccttttccaatggctgagcatgTtTGGTGTGGATGATGAGGGCATGTACTTAAATGATGTTGAGGAAGCTGCTGCTGGTCATGCTGAGGAAACTAGAGGTAAAGAGGTTGTCAATGAACAATCCGAGGATGAATCTTATTCTGCATCTAAGGATGCATCTGAGGATGAAACCGAGGATGCATTTGAGGATGAGTGTGTGGATGAATCTGAGGATGAGGGGATGGCATTGGATGAGATGCCAGAACATCTTCCTACCACAACCTATGATAAAAATGATCCACCAATGATAAAAGGAAGCACTTATCCTAACATTGATGAATTTAGATTGGCAATAGCACAACATGCAATAAAAAAGGAATTTGAATATAACATTATCAAGAGTGAACCAGGGAAATTTACTGCAAGTTGTGCTGCTGAAGGCTGCAAATGGAGGATTCATGCATCTGCGGTTGCTGATGGTGTCACCATCATGGTAGGTTTCTATTGTACATCAACATATATTCTTTAAATATTACAAAATATGTGTTTTATTGTGGTATTGATTATCTATGACATTTTAGGTAAAAACTAATCCTGTTGCCCATGGATGCTCGAGTACTAGAAGAAGTGAAACTATCAAGGCTGCAAGCAAGTTTTGGATTTGTGAGAAGGTGAAAGATTGGTTGTTGGAGGATGCTACTGTTGGAGCAAAGGAATTGCAAAGAATGATTCATGAGACACACAAGGTTTTGATCAATTACAAaaagagtgtttgctggtagagagcttgctcttacaaagttgtatgggagctggaatgaaagttttgacatgttgtatagatacaacgcacaaattgaattatcaagccctggtagctttttcatcattgaccatcacaaggttctagaagaaataaggttcaggaggttattctttgccttAaaaccatgcattgatggtttccttggtggttgcaggccatatttggctatagacagtactttcttaacaggcaaatttaagggacagctagcagttgcttgtgctatagatggccataactggatgtacccagttgcttgtggtatatttgactcagagaccaatgaaaattggatatggttcatgcagcaacttagagatgcaattggtactccaacaggcttggctatttgcaccgatgcaggaaagggggtagatagtgcagtgaatgagttaatttctaccttgtgtggtttgtacGtttttttatttcttttgaaaatagctaacaagcattactattttttctctctttggcacattgcagccatgcaagaagctaaaccggaagcgatatcatacctgaagaaatatcacaaaaggctatggagcaggagtcagttctctatagcttgtaaggttgactatgtcacAAataatcttgcagagagcttcaataatatggtgaaagactggaagggactccatttAtatgacttcctagagaagattcggcggtggatgatggtcaaatgggacaagaggcgaagaatatgtatgaattttgaaggtcgcattctacctcatattgtgaaggaactaaatgaaaaaagctgagatttggacatggtggtcactaggaatggtgattttgaggcggaagtagaagtgaaaGggggtagtgggttcagacatgttgtcaatttggagcacaaaacctgcatatgtaGggaatttcaagtctcagGAaaaccttgtctccatgctatagcatttatcacatcaattagaggaaggcttgaagattatgtggatatctgctttagtgtgcatcaatttaggacagcatatgataaattggtgccttcattgcctgacaagtctcaatagccaaaagctaatcatgggttcttcttggcaccacccattttgaagagatcagctgagaggccaaaaactatgaggtacaaaggatgcactgagaaaggaagcaaaagaagtgggaggcacaagtgcccaatttgcaagacctatggccatcattggAATaattgcaaagagggtgatccggagcaactagctgcaatgcttgctgaaaggtaactacacgccttacaaatttccattatatttcttataaccttaagacatatattttctccttttcacagagggccgccaaagaagagaaggaaGaaaactaataaacctccctcagagactagcatcatagttgctccaacatttacaccgataatgacatatccccctaggttagccaatttccttctttatcttatcctaatctgaatttagattagcctttgtacataacaattaattCttcacatTAtctaatccatttattccagtgaggacaatatgacaaggaataatagcttggattcaagtaaatcagttaggtaagtacttgtgccaattgttagtattataTtgctttatccaatccatttgcatttacaattatgtttctataggtctaactcacttactggctccaaccaacctgagccttccaacatgattatagcactaccaccccttggagagcaaacaccaccacctgcaccaacaaaagccaagcgcaagacgaaaggaaaaccaccatctgatgctgctcctgacagcccagctatgggcacaaggagcaaaaagaagagccctgcaatgagcactagaagcAaaaaaaaagcttatggactaaactatggatgtagctag
More
|
||||||||||
| CDS seq | atgcaagatgtgcagTTTTTTTTTAGAGAACTTGTGTGTGACAGTTGTGAACCACATCCACCTCGAATGGCAAATTCAAGGCTTAGCACAGTTTCTTCATGGCTACCAATAGGGATGGACCCCATAGCTACATATTTGTTGGAAATTAAACTAGCGGGGGATCGAAAAAATGCTAGGGTGGAATATGATTGGTTTATATTCAATAAGGTGGTAGACTCAAATGTATTACGCTACAAAGACTTTGTTGATGGCATTGCAAAGTCATATCCATGGGGGCCAAATGAGACTGTTACAATTGGTTACATGGATTTGGgttgcatgTtTGGTGTGGATGATGAGGGCATGTACTTAAATGATGTTGAGGAAGCTGCTGCTGGTCATGCTGAGGAAACTAGAGGTAAAGAGGTTGTCAATGAACAATCCGAGGATGAATCTTATTCTGCATCTAAGGATGCATCTGAGGATGAAACCGAGGATGCATTTGAGGATGAtgaggacaatatgacaaggaataatagcttggattcaagtaaatcagttaggtctaactcacttactggctccaaccaacctgagccttccaacatgattatagcactaccaccccttggagagcaaacaccaccacctgcaccaacaaaagccaagcgcaagacgaaaggaaaaccaccatctgatgctgctcctgacagcccagctatgggcacaaggagcaaaaagaagagccctgcaatgagcactagaagcAaaaaaaaagcttatggactaaactatggatgtagctag
More
|
||||||||||
| Protein seq | MQDVQFFFRELVCDSCEPHPPRMANSRLSTVSSWLPIGMDPIATYLLEIKLAGDRKNARVEYDWFIFNKVVDSNVLRYKDFVDGIAKSYPWGPNETVTIGYMDLGCMFGVDDEGMYLNDVEEAAAGHAEETRGKEVVNEQSEDESYSASKDASEDETEDAFEDDEDNMTRNNSLDSSKSVRSNSLTGSNQPEPSNMIIALPPLGEQTPPPAPTKAKRKTKGKPPSDAAPDSPAMGTRSKKKSPAMSTRSKKKAYGLNYGCS |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0023390 | OsNaBo_11g0023390.01 | Chr11 | 29168378 | 29172117 | + | NAM | ||
| CDS seq | atgcaagatgtgcagTTTTTTTTTAGAGAACTTGTGTGTGACAGTTGTGAACCACATCCACCTCGAATGGCAAATTCAAGGCTTAGCACAGTTTCTTCATGGCTACCAATAGGGATGGACCCCATAGCTACATATTTGTTGGAAATTAAACTAGCGGGGGATCGAAAAAATGCTAGGGTGGAATATGATTGGTTTATATTCAATAAGGTGGTAGACTCAAATGTATTACGCTACAAAGACTTTGTTGATGGCATTGCAAAGTCATATCCATGGGGGCCAAATGAGACTGTTACAATTGGTTACATGGATTTGGgttgcatgTtTGGTGTGGATGATGAGGGCATGTACTTAAATGATGTTGAGGAAGCTGCTGCTGGTCATGCTGAGGAAACTAGAGGTAAAGAGGTTGTCAATGAACAATCCGAGGATGAATCTTATTCTGCATCTAAGGATGCATCTGAGGATGAAACCGAGGATGCATTTGAGGATGAtgaggacaatatgacaaggaataatagcttggattcaagtaaatcagttaggtctaactcacttactggctccaaccaacctgagccttccaacatgattatagcactaccaccccttggagagcaaacaccaccacctgcaccaacaaaagccaagcgcaagacgaaaggaaaaccaccatctgatgctgctcctgacagcccagctatgggcacaaggagcaaaaagaagagccctgcaatgagcactagaagcAaaaaaaaagcttatggactaaactatggatgtagctag
More
|
|||||||
| Protein seq | MQDVQFFFRELVCDSCEPHPPRMANSRLSTVSSWLPIGMDPIATYLLEIKLAGDRKNARVEYDWFIFNKVVDSNVLRYKDFVDGIAKSYPWGPNETVTIGYMDLGCMFGVDDEGMYLNDVEEAAAGHAEETRGKEVVNEQSEDESYSASKDASEDETEDAFEDDEDNMTRNNSLDSSKSVRSNSLTGSNQPEPSNMIIALPPLGEQTPPPAPTKAKRKTKGKPPSDAAPDSPAMGTRSKKKSPAMSTRSKKKAYGLNYGCS
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0438400 | SBH | 1.454167 | 1.168950 | 3.248149 |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0438400 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0012580 | RBH | 0.000000 | 0.000000 | 0.000000 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0012710 | SBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0012530 | RBH | 0.000000 | 0.000000 | 0.000000 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022740 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_03g0041280 | SBH | 0.096751 | 0.222642 | 0.619384 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023270 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0012380 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0012700 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022960 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_03g0029090 | RBH | 0.191860 | 0.0 | 0.931876 |
