Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0023360 | OGI:11076810 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:29155616-29157180 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | atgAcgtaagcatgctcgatcAcacatataggtgtattgtatgcttcgcggctagcttgtttttgacgttttcgtctactgcctctctgccctcctgcatcagctgttatctcgtagtaattcaagatgactggatcactacgtgtggcttgagtgacttgacaacttccttttggcgaatgtcagcaaatatagttttttcagctagcaaccaccatgaggtaaccatgctcgatcacacatataggtgtattgtatgtcacggcagcgttgacgatcgtatccgctcgccctcctgcatcagcggtagctcggaattcagatgactgatcactacgtgtggcttgagtgacttgacaacttccgttgagcacgactacgacggcgagaggcttagtcgtctcgtctagctgccaacctataatcgtgagctcgtgccatgcagtggcatcacacgccggcctgttcgacgaggtcgacggcgacatcgaccgctgcctcctcgagctcggcgtcgccaaccgcatcctcatcacccGcctcgaGggcctcctccaccGgaacgccttccgctcctgtgatctGccgccgccgccgccgtcgccggcgacaatcggaacggagacggagacgacggtgacGgttaggatcggcatgcctcgcgtcgagcacatcgagcaccgtgtccacatggtgcaaggttcAaagaaatttgcatactcctccatttcagTtttgttcttaaagtacttttatgtttatcgttaATttAaaaaaaaaatcagatattggttaaaaaataaccagcaTcaccaatgttatgtaacattgttgtacacgtgggacatGgcaatgcagGAgccaCcaacgtggcagctgttgttgcctccagcAaggaccacctcaccggcaggtctagcgctgctccacgtGgtaacgtaggagtgaccgatgtggtaacTgttgtAGcctccaacAaggacaagtttaccgttAagtccggcacagctaaacgcGgcaatgcaagagtgaccgacatggcacctgttatagCcttcgactccgacaaagataagttcaccatgaggtttggcaccgctacacgtggcaatacaGgagtgactAacatggcaccGgttgtagcctccaacaggAacaagttcaccgtcaGgcccgatgccgctacacGtggcaatgcaagagtaaccgacgtagcaccttctgcagccTcaaacaaggacaagttcacagtcaggtccagcggtgctacgcgtgacaatgcaagagtgaccaacgtggcagctattgcaggctccaacaagAatcagtttaccttcaggaacggtgccactagcatcgcaaccttgttgcaGgagccaccatcaaacgggtatggctattgtccgtatgctgaggggctcaccaccggtgaaagctaccgcgatactaccGgtggtggcccattcgacgccgctgccaccgccgccgctacctactactatttcccgccatttcagcacatgtttagcgaagaggaccctaccAatgcctacaccattctctaa
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| CDS seq | atgAcctcgtgccatgcagtggcatcacacgccggcctgttcgacgaggtcgacggcgacatcgaccgctgcctcctcgagctcggcgtcgccaaccgcatcctcatcacccGcctcgaGggcctcctccaccGgaacgccttccgctcctgtgatctGccgccgccgccgccgtcgccggcgacaatcggaacggagacggagacgacggtgacGgttaggatcggcatgcctcgcgtcgagcacatcgagcaccgtgtccacatggtgcaagGAgccaCcaacgtggcagctgttgttgcctccagcAaggaccacctcaccggcaggtctagcgctgctccacgtGgtaacgtaggagtgaccgatgtggtaacTgttgtAGcctccaacAaggacaagtttaccgttAagtccggcacagctaaacgcGgcaatgcaagagtgaccgacatggcacctgttatagCcttcgactccgacaaagataagttcaccatgaggtttggcaccgctacacgtggcaatacaGgagtgactAacatggcaccGgttgtagcctccaacaggAacaagttcaccgtcaGgcccgatgccgctacacGtggcaatgcaagagtaaccgacgtagcaccttctgcagccTcaaacaaggacaagttcacagtcaggtccagcggtgctacgcgtgacaatgcaagagtgaccaacgtggcagctattgcaggctccaacaagAatcagtttaccttcaggaacggtgccactagcatcgcaaccttgttgcaGgagccaccatcaaacgggtatggctattgtccgtatgctgaggggctcaccaccggtgaaagctaccgcgatactaccGgtggtggcccattcgacgccgctgccaccgccgccgctacctactactatttcccgccatttcagcacatgtttagcgaagaggaccctaccAatgcctacaccattctctaa
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| Protein seq | MTSCHAVASHAGLFDEVDGDIDRCLLELGVANRILITRLEGLLHRNAFRSCDLPPPPPSPATIGTETETTVTVRIGMPRVEHIEHRVHMVQGATNVAAVVASSKDHLTGRSSAAPRGNVGVTDVVTVVASNKDKFTVKSGTAKRGNARVTDMAPVIAFDSDKDKFTMRFGTATRGNTGVTNMAPVVASNRNKFTVRPDAATRGNARVTDVAPSAASNKDKFTVRSSGATRDNARVTNVAAIAGSNKNQFTFRNGATSIATLLQEPPSNGYGYCPYAEGLTTGESYRDTTGGGPFDAAATAAATYYYFPPFQHMFSEEDPTNAYTIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0023360 | OsNaBo_11g0023360.01 | Chr11 | 29155616 | 29157180 | + | NAM | ||
| CDS seq | atgAcctcgtgccatgcagtggcatcacacgccggcctgttcgacgaggtcgacggcgacatcgaccgctgcctcctcgagctcggcgtcgccaaccgcatcctcatcacccGcctcgaGggcctcctccaccGgaacgccttccgctcctgtgatctGccgccgccgccgccgtcgccggcgacaatcggaacggagacggagacgacggtgacGgttaggatcggcatgcctcgcgtcgagcacatcgagcaccgtgtccacatggtgcaagGAgccaCcaacgtggcagctgttgttgcctccagcAaggaccacctcaccggcaggtctagcgctgctccacgtGgtaacgtaggagtgaccgatgtggtaacTgttgtAGcctccaacAaggacaagtttaccgttAagtccggcacagctaaacgcGgcaatgcaagagtgaccgacatggcacctgttatagCcttcgactccgacaaagataagttcaccatgaggtttggcaccgctacacgtggcaatacaGgagtgactAacatggcaccGgttgtagcctccaacaggAacaagttcaccgtcaGgcccgatgccgctacacGtggcaatgcaagagtaaccgacgtagcaccttctgcagccTcaaacaaggacaagttcacagtcaggtccagcggtgctacgcgtgacaatgcaagagtgaccaacgtggcagctattgcaggctccaacaagAatcagtttaccttcaggaacggtgccactagcatcgcaaccttgttgcaGgagccaccatcaaacgggtatggctattgtccgtatgctgaggggctcaccaccggtgaaagctaccgcgatactaccGgtggtggcccattcgacgccgctgccaccgccgccgctacctactactatttcccgccatttcagcacatgtttagcgaagaggaccctaccAatgcctacaccattctctaa
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| Protein seq | MTSCHAVASHAGLFDEVDGDIDRCLLELGVANRILITRLEGLLHRNAFRSCDLPPPPPSPATIGTETETTVTVRIGMPRVEHIEHRVHMVQGATNVAAVVASSKDHLTGRSSAAPRGNVGVTDVVTVVASNKDKFTVKSGTAKRGNARVTDMAPVIAFDSDKDKFTMRFGTATRGNTGVTNMAPVVASNRNKFTVRPDAATRGNARVTDVAPSAASNKDKFTVRSSGATRDNARVTNVAAIAGSNKNQFTFRNGATSIATLLQEPPSNGYGYCPYAEGLTTGESYRDTTGGGPFDAAATAAATYYYFPPFQHMFSEEDPTNAYTIL
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g44570 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0023050 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0023130 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0022760 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0022450 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0022710 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0404800 | RBH | 0.0121665 | 0.0322505 | 0.0094955 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0023610 | RBH | 0.0 | 0.0 | 0.0 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0423800 | SBH | 0 | 0.0872155 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0023240 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0023360 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0022950 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0022680 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0022570 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G022930 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
