Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0021730 | OGI:11072230 | 4/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:27511748-27514704 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | ttactgattatcatcgtccacagatgtgattgcaatcTccatcttctctttcctcaagctgtctgcaagcttcaatggccgaagttcaatggtggctgctctcacgaaaccatcctctgcattgtccaagctgcgttcaatcaccatgcTtgaggtactcatagctaaaacaagggacagacatttgcacaaactcatagctaaatagatttgaggccaccgagtgcttctgtgctaaagaaatacgagtaactttatatggtatgtttgctaatatcaagtgtttgttaataggAaaaagtaagctacattctgtctctagcacaactaggatccattttattggAaaacatcagaccaggctagataaagctacgaactgagcaacatagtactcatgcatgctaatgtgacagaagcagtatgcatggaatgaggtgatcatgactaatgacactgattgacaagtatgtaCTtaaattgaaaaggtagtaccttgcaatccaagcagaggtcgtttatcaggccTtttacttgtgaaattaCcccagcaatttgaagtctgacaactcccgaacagaaaaggcctcaaattttggaccaatcaagttcagagcacacataaggttgcaactcacaattgttaatccttgctctgcagaaagttaaccacaaaagatggtttgacacgatctgctcgatgaggtacaagaacatTCAtcacagccttcttgtttaattcaccaccaactgcaacatttgtaagcacaaacataccctgaagagaggaaacagaaaggCcaatgactaactatgatttttgcattcTttttttcagATaataaatagtatcacagttaagaagcatgcatccgtataatacaaactgaagagaggaaacagaaaggccaATgactaactatgaTttttgcattctttttttcagataaTaaatagtatcacagttaagaagcatgCatccgtatgaaaacAaaaaaaaaatacactgtttTAatggaaatAtttccctttttgccctccatagtttaaaaacacaTatgaaaaaaaaaagtatagataaggtaagtcagtatactgtagtttaaggaatactgaCctgtatgcacactcctaaggcatatgtgcattactcagctgtcttgaaatagcatttaaaatcatgccatcttcaCcaataacataattaatggtgtccacatatccttcaacaaaattttgctgctgcTgctgcacctcttcaCcctactatttcaccattcgctcaaacgctcatgtgaatctatctgaaagtgccaagacaacatccttgacctcatgtattttgcgacaagggcagtgacggtaacaagctcaccgccaCtgctgagctgcttgacatgagaatctgtgctgcattgttccccacagcagcacagcatcTgtgcccacacctggcagatcatctctagcgtgccagtgccatcagcaggcgagtcttgccggtcgatgaggaaTgcaccaagcgagcatCctcccctcaacatcttgtCcccaagtctattagtatttgtacaagtTAaTttaaacttcggtttagagctattcgtcctcaatgcatctgcgttaagttgtagcaagtggagcacatcctcagctgtgctgtacctcaggtgacgagtgatagcatagcacagcacAagataatcattgcggctggcatcgggaggcagcatgtggggacgtgatgcaagcaggaaaagcatgtgattggacagcgcctgagccgtttccataaggtcagcagCtgaacctgaaccatcgactacctctggttgctcctctccagcagctgaacttgagccattggcaacctctccttgctccccttcagcagctgaaactgaaccaccgacggcctttgcttgatcctcttcagcagttgaacttgaaccactggcagcctctgcttgcccttcttcagcagctgaacctgaaccaccggtggccgctgcttgctcctcttcagcagctgaacctgaaccactggtggcctctgcttgcttcttctcctgatCcttgtaccagcacaGgtagatctcagtGgcgatgtgccagatgaggatcctctgctccatcttggactcagcaaCccaggctgggtccctgtacaatcctctgctttcaaattcctcctgaccccattgcttcgccttcatggtctccagcagcagctgcttggtacacgccgagatggggatgggcaggcccgagtaagccaacctgttccaccagtcctcgactcccatccacctcgcaatcttgctgcatcggctggccctgctgtgcacgcacaactgaatcaggTtgagctgccccatggagcgtgaccagctgcgcctcctcctccAatatgccgcacggaccagccggcggagacaggcgggtatgtgagcaagaaaattacacacattacttccttccgatcccttctttaccaggagtgcacatgtccagctcgagaacatggccctcaaaagtgacatagtctccaggatgacggctccaacaaagaggacatatgtaacaatgacatctgctctgctgtaaccattcagcttatgctgatgatgatttccccagactagtagtatattAaacagaaagaatgcaacggtggtggccagagacgaaagcactcggatgcaaaggccataccaagtgtgtgtaatctcagacttggtgtagaagacgtcgtggagGAgggagagttgcatctcagccaccttgtacaactcgtcctccccttgcaatcgtgatccttcattcatggggccacacaaaaacagacgaggTaatggccccttaaacctatccttggcaaaatccaacaataggtgagcatttaatagcaaggtttctgctggatccaagcgacgtatgaatgactcaggcaccat
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| CDS seq | atggtgcctgagtcattcatacgtcgcttggatccagcagaaaccttgctattaaatgctcacctattgttggattttgccaaggataggtttaaggggccattAcctcgtctgtttttgtgtggccccatgaatgaaggatcacgattgcaaggggaggacgagttgtacaaggtggctgagatgcaactctcccTCctccacgacgtcttctacaccaagtctgagattacacacacttggtatggcctttgcatccgagtgctttcgtctctggccaccaccgttgcattctttctgttTaatatactactagtctggggaaatcatcatcagcataagctgaatggttacagcagagcagatgtcattgttacatatgtcctctttgttggagccgtcatcctggagactatgtcacttttgagggccatgttctcgagctggacatgtgcactcctggtaaagaagggatcggaaggaagtaatgtgtgtaattttcttgctcacatacccgcctgtctccgccggctggtccgtgcggcatatTggaggaggaggcgcagctggtcacgctccatggggcagctcaAcctgattcagttgtgcgtgcacagcagggccagccgatgcagcaagattgcgaggtggatgggagtcgaggactggtggaacaggttggcttactcgggcctgcccatccccatctcggcgtgtaccaagcagctgctgctggagaccatgaaggcgaagcaatggggtcaggaggaatttgaaagcagaggattgtacagggacccagcctggGttgctgagtccaagatggagcagaggatcctcatctggcacatcgcCactgagatctacCtgtgctggtacaagGatcaggagaagaagcaagcagaggccaccagtggttcaggttcagctgctgaagaggagcaagcagcggccaccggtggttcaggttcagctgctgaagaagggcaagcagaggctgccagtggttcaagttcaactgctgaagaggatcaagcaaaggccgtcggtggttcagtttcagctgctgaaggggagcaaggagaggttgccaatggctcaagttcagctgctggagaggagcaaccagaggtagtcgatggttcaggttcaGctgctgaccttatggaaacggctcaggcgctgtccaatcacatgcttttcctgcttgcatcacgtccccacatgctgcctcccgatgccagccgcaatgattatctTgtgctgtgctatgctatcactcgtcacctgaggtacagcacagctgaggatgtgctccacttgctacaacttaacgcagatgcattgaggacgaatagctctaaaccgaagtttaaAtTAacttgtacaaatactaatagacttgggGacaagatgttgaggggagGatgctcgcttggtgcAttcctcatcgaccggcaagactcgcctgctgatggcactggcacgctagagatgatctgccaggtgtgggcacAgatgctgtgctgctgtggggaacaatgcagcacagattctcatgtcaagcagctcagcaGtggcggtgagcttgttaccgtcactgcccttgtcgcaaaatacatgaggtcaaggatgttgtcttggcactttcagatagattcacatgagcgtttgagcgaatggGtgaagaggtgcagcAgcagcagcaaaattttgttgaaggatatgtggacaccattaattatgttattgggtatgtttgtgcttacaaatgttgcagttggtggtgaattaaacaagaaggctgtgaTGAatgttcttgtacctcatcgagcagatcgtgtcaaaccatcttttgtgacttcaaattgctgggGtaatttcacaagtaaaAggcctgataaacgacctctgcttggattgcaagctatgagtacctcaAgcatggtgattgaacgcagcttggacaatgcagaggatggtttcgtgagagcagccaccattgaacttcggccattgaagcttgcagacagcttgaggaaagagaagatggAgattgcaatcacatctgtggacgatgataatcagtaa
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| Protein seq | MVPESFIRRLDPAETLLLNAHLLLDFAKDRFKGPLPRLFLCGPMNEGSRLQGEDELYKVAEMQLSLLHDVFYTKSEITHTWYGLCIRVLSSLATTVAFFLFNILLVWGNHHQHKLNGYSRADVIVTYVLFVGAVILETMSLLRAMFSSWTCALLVKKGSEGSNVCNFLAHIPACLRRLVRAAYWRRRRSWSRSMGQLNLIQLCVHSRASRCSKIARWMGVEDWWNRLAYSGLPIPISACTKQLLLETMKAKQWGQEEFESRGLYRDPAWVAESKMEQRILIWHIATEIYLCWYKDQEKKQAEATSGSGSAAEEEQAAATGGSGSAAEEGQAEAASGSSSTAEEDQAKAVGGSVSAAEGEQGEVANGSSSAAGEEQPEVVDGSGSAADLMETAQALSNHMLFLLASRPHMLPPDASRNDYLVLCYAITRHLRYSTAEDVLHLLQLNADALRTNSSKPKFKLTCTNTNRLGDKMLRGGCSLGAFLIDRQDSPADGTGTLEMICQVWAQMLCCCGEQCSTDSHVKQLSSGGELVTVTALVAKYMRSRMLSWHFQIDSHERLSEWVKRCSSSSKILLKDMWTPLIMLLGMFVLTNVAVGGELNKKAVMNVLVPHRADRVKPSFVTSNCWGNFTSKRPDKRPLLGLQAMSTSSMVIERSLDNAEDGFVRAATIELRPLKLADSLRKEKMEIAITSVDDDNQ |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0021730 | OsNaBo_11g0021730.01 | Chr11 | 27511748 | 27514704 | - | NAM | ||
| CDS seq | atggtgcctgagtcattcatacgtcgcttggatccagcagaaaccttgctattaaatgctcacctattgttggattttgccaaggataggtttaaggggccattAcctcgtctgtttttgtgtggccccatgaatgaaggatcacgattgcaaggggaggacgagttgtacaaggtggctgagatgcaactctcccTCctccacgacgtcttctacaccaagtctgagattacacacacttggtatggcctttgcatccgagtgctttcgtctctggccaccaccgttgcattctttctgttTaatatactactagtctggggaaatcatcatcagcataagctgaatggttacagcagagcagatgtcattgttacatatgtcctctttgttggagccgtcatcctggagactatgtcacttttgagggccatgttctcgagctggacatgtgcactcctggtaaagaagggatcggaaggaagtaatgtgtgtaattttcttgctcacatacccgcctgtctccgccggctggtccgtgcggcatatTggaggaggaggcgcagctggtcacgctccatggggcagctcaAcctgattcagttgtgcgtgcacagcagggccagccgatgcagcaagattgcgaggtggatgggagtcgaggactggtggaacaggttggcttactcgggcctgcccatccccatctcggcgtgtaccaagcagctgctgctggagaccatgaaggcgaagcaatggggtcaggaggaatttgaaagcagaggattgtacagggacccagcctggGttgctgagtccaagatggagcagaggatcctcatctggcacatcgcCactgagatctacCtgtgctggtacaagGatcaggagaagaagcaagcagaggccaccagtggttcaggttcagctgctgaagaggagcaagcagcggccaccggtggttcaggttcagctgctgaagaagggcaagcagaggctgccagtggttcaagttcaactgctgaagaggatcaagcaaaggccgtcggtggttcagtttcagctgctgaaggggagcaaggagaggttgccaatggctcaagttcagctgctggagaggagcaaccagaggtagtcgatggttcaggttcaGctgctgaccttatggaaacggctcaggcgctgtccaatcacatgcttttcctgcttgcatcacgtccccacatgctgcctcccgatgccagccgcaatgattatctTgtgctgtgctatgctatcactcgtcacctgaggtacagcacagctgaggatgtgctccacttgctacaacttaacgcagatgcattgaggacgaatagctctaaaccgaagtttaaAtTAacttgtacaaatactaatagacttgggGacaagatgttgaggggagGatgctcgcttggtgcAttcctcatcgaccggcaagactcgcctgctgatggcactggcacgctagagatgatctgccaggtgtgggcacAgatgctgtgctgctgtggggaacaatgcagcacagattctcatgtcaagcagctcagcaGtggcggtgagcttgttaccgtcactgcccttgtcgcaaaatacatgaggtcaaggatgttgtcttggcactttcagatagattcacatgagcgtttgagcgaatggGtgaagaggtgcagcAgcagcagcaaaattttgttgaaggatatgtggacaccattaattatgttattgggtatgtttgtgcttacaaatgttgcagttggtggtgaattaaacaagaaggctgtgaTGAatgttcttgtacctcatcgagcagatcgtgtcaaaccatcttttgtgacttcaaattgctgggGtaatttcacaagtaaaAggcctgataaacgacctctgcttggattgcaagctatgagtacctcaAgcatggtgattgaacgcagcttggacaatgcagaggatggtttcgtgagagcagccaccattgaacttcggccattgaagcttgcagacagcttgaggaaagagaagatggAgattgcaatcacatctgtggacgatgataatcagtaa
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| Protein seq | MVPESFIRRLDPAETLLLNAHLLLDFAKDRFKGPLPRLFLCGPMNEGSRLQGEDELYKVAEMQLSLLHDVFYTKSEITHTWYGLCIRVLSSLATTVAFFLFNILLVWGNHHQHKLNGYSRADVIVTYVLFVGAVILETMSLLRAMFSSWTCALLVKKGSEGSNVCNFLAHIPACLRRLVRAAYWRRRRSWSRSMGQLNLIQLCVHSRASRCSKIARWMGVEDWWNRLAYSGLPIPISACTKQLLLETMKAKQWGQEEFESRGLYRDPAWVAESKMEQRILIWHIATEIYLCWYKDQEKKQAEATSGSGSAAEEEQAAATGGSGSAAEEGQAEAASGSSSTAEEDQAKAVGGSVSAAEGEQGEVANGSSSAAGEEQPEVVDGSGSAADLMETAQALSNHMLFLLASRPHMLPPDASRNDYLVLCYAITRHLRYSTAEDVLHLLQLNADALRTNSSKPKFKLTCTNTNRLGDKMLRGGCSLGAFLIDRQDSPADGTGTLEMICQVWAQMLCCCGEQCSTDSHVKQLSSGGELVTVTALVAKYMRSRMLSWHFQIDSHERLSEWVKRCSSSSKILLKDMWTPLIMLLGMFVLTNVAVGGELNKKAVMNVLVPHRADRVKPSFVTSNCWGNFTSKRPDKRPLLGLQAMSTSSMVIERSLDNAEDGFVRAATIELRPLKLADSLRKEKMEIAITSVDDDNQ
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 1.890514 | 0.494704 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0638700 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g42080 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0638700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0021500 | SBH | 0.952390 | 27.085344 | 7.764367 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0021480 | SBH | 0.379820 | 9.197201 | 3.262582 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0021370 | SBH | 1.575045 | 25.131025 | 12.998347 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0020810 | SBH | 0.138190 | 0.689854 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0021380 | SBH | 7.394699 | 18.865784 | 16.661329 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0381100 | SBH | 2.9579365 | 8.673548 | 0.0066855 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0021850 | RBH | 0.0 | 0.148401 | 0.116875 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0401100 | SBH | 1.8536195 | 2.1733855 | 0.0084855 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0021700 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0021810 | SBH | 0.655373 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0021480 | SBH | 0.0 | 18.091593 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0021250 | SBH | 0.0 | 0.376306 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G021230 | SBH | 1.452731 | 12.127463 | 9.915155 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
