Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0016390 | OGI:11058130 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:21470054-21472113 | ||||||||
| Gene Symbol | OsSTA262 | ||||||||||
| DNA seq | ccactgcgaggcatatcccctcactttgcgccacgccacagataaatttccatcgccttcgccttcgccttcgccttcgcgagatcggatccggcggcgacgatggccggcggcgtcgaccgcatctcggcgctccccgacgacctcatccagcgcatcctccgcttcgcgccggccaacgaggccgcgtccaccagcctgctctcggcgcggtggcgctcgctctggcgctccaccggcgccgtcaacctcgccgtgcgcctccccgagctcgaccgccgccacggctaccgcgtcatccacgccgccgtctcctcctgccatgacgccttcctccgctccgcgcaggcggcgctctccgccgccgcagccggaggtcgaggccgccacgtcacgaggctcaccttggaccttcgagcggcgaccatggatgtgatcgacGggttcgtgcacacggagaggtcgtttgatgcgggcgcggcgccggcgcccgacacggacgtgtggctgcggctcagcgatgacgtcgagcgagaggcggacagatGggtgaagaggggagacgtggtccgcgacgtggtctcccacccggcggcgcgccgcgtggaggagctccgcctcagcgccagcgcgccggccgtcgacgatgacgacgacggcggcgaggtcgggcgtctcgtcggggtgttccacctggacctccgctacgtcccgtcggagaccctccgcgtgctggacctgacccggtgcagcggcctgcgcatgccgcccgccgccgccgccgccgtggAaaccccgcggctgacgacgctgcggctgcaggcctgcgccgtgaacgcgaacgacctgcagcgcgtcatcgacgccgcgccggcgctcgccaccgtgcacctcgactccgtctccttcgacgggatggagcacggctgctaccgcctccgcctcccggcggccaccaccacgctcgtgctggcgaggtgcaggacggacgcggagccctaccgctaccggagaagcggcggcccactggggaccagctccgtcgagatcgacgcgccggggctccgatcgttcaggtacgcgggctacgcgcggcgcttctccctcgcctcgccgccggacatggcgcgtgccgacctccacttcttccacgacatgtacgcctccgcctccacgtgccgcgacctcttctGgGCGCTTCCTCCGCAACTTCCGCGGCGTCAGGTCCCTCAAGCTCAAGGTGAGCAACCTCAAGCACGTCGCCGTCGCCGGCAGGGCGGCGACGCGCGCCGAGCTCCTCGTCGCGTTCCCCAGCGTCGAGCACCTCGAGCTGGCGGGGCACCACGAGCCGGCGAGCGAGGCGGCCGCGGCGGTGGCCATCGGCAACCTCCTCCGCTGCTGCCCCGCCGCGCGCCACCTCGCGCTCCGCCTCACCACGGCGCCGAGCGAGCGCGACTCCGCCATGAACGGCAGGTACGGCTGCGATCTCCTGCGAGCGAAACAGCAAGCCGACCTCGCCGAGTCTCTCGATCGCTTCGCTCGCCGCCGCAAACGCAAGCCTCCGCCGCCGCCGGTGAACTCCATGGACGAACACCTGAACATCGTAGGATTGAATGGCCGATCCTTCGCCTGCTTGACAAACTCGCTGAGAAGATTTGCAATCCAGTTTCGGATGGATCAACCCAACTGCATTGGCGTCAAGCTGATCAAGTTCTTCGCCGAGAACGCGATTCACCTCGAAGAAATGCGCATCGACGGTGGAAACCAGAGGATGCACGATCACATCAACCACATGGTTGAGAGATGGATCTCCGATTCATCATCAGCGAAaaaagagggcgaatcacgagatttcttcagagggatcttgtgatgtttccgttgtcgattccaagcagggtatcgaagcgagtacgccacgctttagattgttaccgcttgagaggcggtaaaattaaggggaggtggatttttgtgaattcttgaaattatggtgttagtaagattgtggattgtagttcgataagctattattttggattccgaatgttcttgaaatg
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| CDS seq | atggccggcggcgtcgaccgcatctcggcgctccccgacgacctcatccagcgcatcctccgcttcgcgccggccaacgaggccgcgtccaccagcctgctctcggcgcggtggcgctcgctctggcgctccaccggcgccgtcaacctcgccgtgcgcctccccgagctcgaccgccgccacggctaccgcgtcatccacgccgccgtctcctcctgccatgacgccttcctccgctccgcgcaggcggcgctctccgccgccgcagccggaggtcgaggccgccacgtcacgaggctcaccttggaccttcgagcggcgaccatggatgtgatcgacGggttcgtgcacacggagaggtcgtttgatgcgggcgcggcgccggcgcccgacacggacgtgtggctgcggctcagcgatgacgtcgagcgagaggcggacagatGggtgaagaggggagacgtggtccgcgacgtggtctcccacccggcggcgcgccgcgtggaggagctccgcctcagcgccagcgcgccggccgtcgacgatgacgacgacggcggcgaggtcgggcgtctcgtcggggtgttccacctggacctccgctacgtcccgtcggagaccctccgcgtgctggacctgacccggtgcagcggcctgcgcatgccgcccgccgccgccgccgccgtggAaaccccgcggctgacgacgctgcggctgcaggcctgcgccgtgaacgcgaacgacctgcagcgcgtcatcgacgccgcgccggcgctcgccaccgtgcacctcgactccgtctccttcgacgggatggagcacggctgctaccgcctccgcctcccggcggccaccaccacgctcgtgctggcgaggtgcaggacggacgcggagccctaccgctaccggagaagcggcggcccactggggaccagctccgtcgagatcgacgcgccggggctccgatcgttcaggtacgcgggctacgcgcggcgcttctccctcgcctcgccgccggacatggcgcgtgccgacctccacttcttccacgacatGTCCCTCAAGCTCAAGGTGAGCAACCTCAAGCACGTCGCCGTCGCCGGCAGGGCGGCGACGCGCGCCGAGCTCCTCGTCGCGTTCCCCAGCGTCGAGCACCTCGAGCTGGCGGGGCACCACGAGCCGGCGAGCGAGGCGGCCGCGGCGGTGGCCATCGGCAACCTCCTCCGCTGCTGCCCCGCCGCGCGCCACCTCGCGCTCCGCCTCACCACGGCGCCGAGCGAGCGCGACTCCGCCATGAACGGCAGGTACGGCTGCGATCTCCTGCGAGCGAAACAGCAAGCCGACCTCGCCGAGTCTCTCGATCGCTTCGCTCGCCGCCGCAAACGCAAGCCTCCGCCGCCGCCGGTGAACTCCATGGACGAACACCTGAACATCGTAGGATTGAATGGCCGATCCTTCGCCTGCTTGACAAACTCGCTGAGAAGATTTGCAATCCAGTTTCGGATGGATCAACCCAACTGCATTGGCGTCAAGCTGATCAAGTTCTTCGCCGAGAACGCGATTCACCTCGAAGAAATGCGCATCGACGGTGGAAACCAGAGGATGCACGATCACATCAACCACATGGTTGAGAGATGGATCTCCGATTCATCATCAGCGAAaaaagagggcgaatcacgagatttcttcagagggatcttgtga
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| Protein seq | MAGGVDRISALPDDLIQRILRFAPANEAASTSLLSARWRSLWRSTGAVNLAVRLPELDRRHGYRVIHAAVSSCHDAFLRSAQAALSAAAAGGRGRHVTRLTLDLRAATMDVIDGFVHTERSFDAGAAPAPDTDVWLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEELRLSASAPAVDDDDDGGEVGRLVGVFHLDLRYVPSETLRVLDLTRCSGLRMPPAAAAAVETPRLTTLRLQACAVNANDLQRVIDAAPALATVHLDSVSFDGMEHGCYRLRLPAATTTLVLARCRTDAEPYRYRRSGGPLGTSSVEIDAPGLRSFRYAGYARRFSLASPPDMARADLHFFHDMSLKLKVSNLKHVAVAGRAATRAELLVAFPSVEHLELAGHHEPASEAAAAVAIGNLLRCCPAARHLALRLTTAPSERDSAMNGRYGCDLLRAKQQADLAESLDRFARRRKRKPPPPPVNSMDEHLNIVGLNGRSFACLTNSLRRFAIQFRMDQPNCIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVERWISDSSSAKKEGESRDFFRGIL |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0016390 | OsNaBo_11g0016390.01 | Chr11 | 21470156 | 21471926 | + | NAM | ||
| CDS seq | atggccggcggcgtcgaccgcatctcggcgctccccgacgacctcatccagcgcatcctccgcttcgcgccggccaacgaggccgcgtccaccagcctgctctcggcgcggtggcgctcgctctggcgctccaccggcgccgtcaacctcgccgtgcgcctccccgagctcgaccgccgccacggctaccgcgtcatccacgccgccgtctcctcctgccatgacgccttcctccgctccgcgcaggcggcgctctccgccgccgcagccggaggtcgaggccgccacgtcacgaggctcaccttggaccttcgagcggcgaccatggatgtgatcgacGggttcgtgcacacggagaggtcgtttgatgcgggcgcggcgccggcgcccgacacggacgtgtggctgcggctcagcgatgacgtcgagcgagaggcggacagatGggtgaagaggggagacgtggtccgcgacgtggtctcccacccggcggcgcgccgcgtggaggagctccgcctcagcgccagcgcgccggccgtcgacgatgacgacgacggcggcgaggtcgggcgtctcgtcggggtgttccacctggacctccgctacgtcccgtcggagaccctccgcgtgctggacctgacccggtgcagcggcctgcgcatgccgcccgccgccgccgccgccgtggAaaccccgcggctgacgacgctgcggctgcaggcctgcgccgtgaacgcgaacgacctgcagcgcgtcatcgacgccgcgccggcgctcgccaccgtgcacctcgactccgtctccttcgacgggatggagcacggctgctaccgcctccgcctcccggcggccaccaccacgctcgtgctggcgaggtgcaggacggacgcggagccctaccgctaccggagaagcggcggcccactggggaccagctccgtcgagatcgacgcgccggggctccgatcgttcaggtacgcgggctacgcgcggcgcttctccctcgcctcgccgccggacatggcgcgtgccgacctccacttcttccacgacatGTCCCTCAAGCTCAAGGTGAGCAACCTCAAGCACGTCGCCGTCGCCGGCAGGGCGGCGACGCGCGCCGAGCTCCTCGTCGCGTTCCCCAGCGTCGAGCACCTCGAGCTGGCGGGGCACCACGAGCCGGCGAGCGAGGCGGCCGCGGCGGTGGCCATCGGCAACCTCCTCCGCTGCTGCCCCGCCGCGCGCCACCTCGCGCTCCGCCTCACCACGGCGCCGAGCGAGCGCGACTCCGCCATGAACGGCAGGTACGGCTGCGATCTCCTGCGAGCGAAACAGCAAGCCGACCTCGCCGAGTCTCTCGATCGCTTCGCTCGCCGCCGCAAACGCAAGCCTCCGCCGCCGCCGGTGAACTCCATGGACGAACACCTGAACATCGTAGGATTGAATGGCCGATCCTTCGCCTGCTTGACAAACTCGCTGAGAAGATTTGCAATCCAGTTTCGGATGGATCAACCCAACTGCATTGGCGTCAAGCTGATCAAGTTCTTCGCCGAGAACGCGATTCACCTCGAAGAAATGCGCATCGACGGTGGAAACCAGAGGATGCACGATCACATCAACCACATGGTTGAGAGATGGATCTCCGATTCATCATCAGCGAAaaaagagggcgaatcacgagatttcttcagagggatcttgtga
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| Protein seq | MAGGVDRISALPDDLIQRILRFAPANEAASTSLLSARWRSLWRSTGAVNLAVRLPELDRRHGYRVIHAAVSSCHDAFLRSAQAALSAAAAGGRGRHVTRLTLDLRAATMDVIDGFVHTERSFDAGAAPAPDTDVWLRLSDDVEREADRWVKRGDVVRDVVSHPAARRVEELRLSASAPAVDDDDDGGEVGRLVGVFHLDLRYVPSETLRVLDLTRCSGLRMPPAAAAAVETPRLTTLRLQACAVNANDLQRVIDAAPALATVHLDSVSFDGMEHGCYRLRLPAATTTLVLARCRTDAEPYRYRRSGGPLGTSSVEIDAPGLRSFRYAGYARRFSLASPPDMARADLHFFHDMSLKLKVSNLKHVAVAGRAATRAELLVAFPSVEHLELAGHHEPASEAAAAVAIGNLLRCCPAARHLALRLTTAPSERDSAMNGRYGCDLLRAKQQADLAESLDRFARRRKRKPPPPPVNSMDEHLNIVGLNGRSFACLTNSLRRFAIQFRMDQPNCIGVKLIKFFAENAIHLEEMRIDGGNQRMHDHINHMVERWISDSSSAKKEGESRDFFRGIL
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0016390 | OsNaBo_11g0016390.02 | Chr11 | 21470054 | 21472113 | + | IsoSeq | ||
| CDS seq | cactgcgaggcatatcccctcactttgcgccacgccacagataaatttccatcgccttcgccttcgccttcgccttcgcgagatcggatccggcggcgacgatggccggcggcgtcgaccgcatctcggcgctccccgacgacctcatccagcgcatcctccgcttcgcgccggccaacgaggccgcgtccaccagcctgctctcggcgcggtggcgctcgctctggcgctccaccggcgccgtcaacctcgccgtgcgcctccccgagctcgaccgccgccacggctaccgcgtcatccacgccgccgtctcctcctgccatgacgccttcctccgctccgcgcaggcggcgctctccgccgccgcagccggaggtcgaggccgccacgtcacgaggctcaccttggaccttcgagcggcgaccatgg
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| Protein seq | HCEAYPLTLRHATDKFPSPSPSPSPSRDRIRRRRWPAASTASRRSPTTSSSASSASRRPTRPRPPACSRRGGARSGAPPAPSTSPCASPSSTAATATASSTPPSPPAMTPSSAPRRRRSPPPQPEVEAATSRGSPWTFERRPW |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.762053 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0539000 | RBH | 0.0 | 0.0 | 0.915209 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g33250 | RBH | 0.0 | 0.0 | 0.230987 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0539000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0016320 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0016260 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016230 | RBH | 0.0 | 0.0 | 0.692572 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0015790 | RBH | 0.000000 | 0.534949 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0016250 | RBH | 0.0 | 0.0 | 1.012911 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0308900 | RBH | 0.088426 | 0.2941675 | 0.0364275 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0016510 | RBH | 0.0 | 0.0 | 0.333234 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0317100 | RBH | 0.0689165 | 0.016979 | 0.4724885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0016450 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0016440 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0016060 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0015830 | RBH | 0.167726 | 0.0 | 0.450630 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0016150 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G015950 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0016350 | RBH | 0.0 | 2.107827 | 0.0 |
