Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0014480 | OGI:11052210 | 13/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:19186011-19188271 | ||||||||
| Gene Symbol | OsSTA260 | ||||||||||
| DNA seq | ctattgatgcaaacgctgtacctagaggatagggatagaggaagagggaaaaatcgaaatgaaataaataaagaataaagcaaaaaaaaaagtcgaagatagaagagcccagattccAaatgaagaaatggaaactcgaaaaggatccttctgattctcAAagaatgaggggcaaggggattgataccgagaaagatttcttcttattataagacgtgatttgatccgcatatgtttggtaaaagaacaatcttctatctcagaaattctgatattaatcagataaaaagaaaaatatagagtccatctggaaatataatttaaaatttgcttacatttggAagagaaatattagaagagtaaactagagtccatataggtatAaaatttagagctaattagaatttggaactAaaaaaaatatgAaaattaaaagtagatattagagttcatatagaaatacaacttataaataactaacattcgaaactacaaaataggaatattggaaaaagtgtctagagtcaatatatgaatccaatttagaaataactaaaatttGgaattaagaaatatggaatattgaaagttgagtttgattccatatagaaatacaattagaaataatagaaattaaaaattAaaaataagtaatattgaacaagagtttatagttcttataggaatttgtaggaacttagtactaattgaaagtcagaataaaaaaagtaatgtttgtagattatatgaaattttgaaaaataagAaagtttggaagaagtctagagtccatataggaatacaATttAaaataactaaaatAaaaaattaaggatattaaagtaagagtgtagagtccctataggaatacaattaaaataactaaaatAAaaaattaaggatattaaagtaagagtgtagagtccatataggaatacaatttaaaaataactaaaattcggaataaaaaatatgaaacactgaaaaaaaaagtgaaagaagagtgcagagtccatatagaaatacaatttAtaaataataTaaattaataaaaaaataAATtttggaagatgagtgtagagtttatataggaatacaatttagaaataactgaaattctaaaatAaaaaataaggatattagaagaagagtgtagagtccatataggataatttagaaataaccAaaattcaaaATttAaaaataaattaatagccatcacgcatatagaatacatatgaatatcacatattggttagtttaatgaagtTAGtacaaaatttAaaattatgttaccattttaacatattttaacaataaattgtgaaaaTatatatgctattatgtacaataaaatcaaaccaGcccccttggcttcacagtaacgggtggtcttggttacatgggagaaagaaagggcaccaggtgataTaaccaattatgtcgggaaaaatggttgaagtttgcatttctcttgaataaaagagctttaattgaacttcttatcagaaccaaacgtccattagtatacactcaaaattgcagccaattttttgcacaataccAacaagtatattgatcttttaaaataagaattaataaattcatcaatgtatttggtttggactagTACTtatatttttttgttgttttgataattcaaatgaaacagataaaatagagttgtactccaattggagcctcaattatAaacgtttgatggtttaagaattcaataataatttaaaaataatAaatacctcttctccttcaattattgtttcatcatcaaccgggcgttgcgcctgatcaattaccattctgtgttcaaaacatatgctgacatcgaacgttggattgttgggatttctgatgatcgccgcccttatggcagtatctgcactgtccacctcacgaaacctggaaccggtgcatcgaattttaactgtgacttgcgtgacagaacagaggttctccaatccaaaattAaaatcaccatagatgtccttcgtctcccgagcattgagtgtaatgtagagactttcaagtttttgcatagcaccttgtgaaaacatgaggcccattgcatcagatttaaaggtaagatgttgtaggcactgaaattgtgtaggatctgtgccAacgaccagcctttcttctgtggattcaatcttttctatggtaagataaagataagacagaaatggtaatgccccaagaTttttgaggtcctcttgccgtagtatcttgagcgtcgacat
More
|
||||||||||
| CDS seq | atgtcgacgctcaagatactacggcaagaggacctcaaaaAtcttggggcattaccatttctgtcttatctttatcttaccatagaaaagattgaatccacagaagaaaggctggtcgtTggcacagatcctacacaatttcagtgcctacaacatcttacctttaaatctgatgcaatgggcctcatgttttcacaaggtgctatgcaaaaacttgaaagtctctacattacactcaatgctcgggagacgaaggacatctatggtgatttTaattttggattggagaacctctgttctgtcacgcaagtcacagttaaaattcgatgcaccggttccaggtttcgtgaggtggacagtgcagatactgccataagggcggcgatcatcagaaatcccaacaatccaacgttcgatgtcagcatatgttttgaacacagaatggtaattgatcaggcgcaacgcccggttgatgatgaaacaataattgaaggagaagagcgtttgcatcaatag
More
|
||||||||||
| Protein seq | MSTLKILRQEDLKNLGALPFLSYLYLTIEKIESTEERLVVGTDPTQFQCLQHLTFKSDAMGLMFSQGAMQKLESLYITLNARETKDIYGDFNFGLENLCSVTQVTVKIRCTGSRFREVDSADTAIRAAIIRNPNNPTFDVSICFEHRMVIDQAQRPVDDETIIEGEERLHQ |
||||||||||
| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0014480 | OsNaBo_11g0014480.01 | Chr11 | 19186011 | 19188271 | - | NAM | ||
| CDS seq | atgtcgacgctcaagatactacggcaagaggacctcaaaaAtcttggggcattaccatttctgtcttatctttatcttaccatagaaaagattgaatccacagaagaaaggctggtcgtTggcacagatcctacacaatttcagtgcctacaacatcttacctttaaatctgatgcaatgggcctcatgttttcacaaggtgctatgcaaaaacttgaaagtctctacattacactcaatgctcgggagacgaaggacatctatggtgatttTaattttggattggagaacctctgttctgtcacgcaagtcacagttaaaattcgatgcaccggttccaggtttcgtgaggtggacagtgcagatactgccataagggcggcgatcatcagaaatcccaacaatccaacgttcgatgtcagcatatgttttgaacacagaatggtaattgatcaggcgcaacgcccggttgatgatgaaacaataattgaaggagaagagcgtttgcatcaatag
More
|
|||||||
| Protein seq | MSTLKILRQEDLKNLGALPFLSYLYLTIEKIESTEERLVVGTDPTQFQCLQHLTFKSDAMGLMFSQGAMQKLESLYITLNARETKDIYGDFNFGLENLCSVTQVTVKIRCTGSRFREVDSADTAIRAAIIRNPNNPTFDVSICFEHRMVIDQAQRPVDDETIIEGEERLHQ |
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.000000 | 74.672958 | 0.000000 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0550500 | SBH | 0.123558 | 0.382721 | 2.032062 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g32210 | SBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0550500 | SBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0014590 | SBH | 0.131610 | 3.387070 | 3.701980 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0014550 | SBH | 0.124482 | 2.079519 | 1.518292 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0016980 | SBH | 0.000000 | 2.382756 | 1.236384 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0016620 | SBH | 0.0 | 0.053456 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0014570 | RBH | 0.0 | 0.0 | 0.0 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0274100 | SBH | 0.624932 | 2.9376 | 1.4737915 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0015870 | SBH | 0.0 | 0.0 | 0.512517 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0287900 | SBH | 6.0634705 | 2.173418 | 12.327079 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0014730 | SBH | 0.000000 | 0.000000 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0014710 | SBH | 0.604820 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0014350 | SBH | 4.941029 | 10.167318 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0014220 | SBH | 0.588396 | 0.0 | 0.230484 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0014430 | RBH | 0.0 | 5.073300 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G014230 | RBH | 0.0 | 6.142441 | 0.051285 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
