Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0013610 | OGI:11047240 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:17829097-17838285 | ||||||||
| Gene Symbol | C3H63, OsC3H63 | ||||||||||
| DNA seq | tgtagtttagaaaccatccactacatttcatccgcatgtggcgaacctactcgtatcggatgattataggattaggagtcatctggaactccttttgctccacattataccttcacctactgacactccagaatcctgatgcagctgctccgtttatcaggtcataggtgttgacgcagctgctccgttcatcaggatttaggaggcgtaacaccggatagaggtgtttggcaaccttgatagctgtgcaaatgatagattgctgtaacagaattaggaaccggacctgtctcaaccagtctaaccctacctcttgttacttgttctttagtaaccatccttcccgtgcacatataatggcaaaaaaatgatgcacaattgataaaaggttcagtagcagaacaaaattttgcaagatgaaatgacaaactaaagccggcaccaccaaggtgaattttctgctctcttatgggaacaagtgacagggtataaatatgtagatgattatacaattgcctattatttccgcatcctcaacatgcacaattccagaagcgggggttgccccttatgaaactgctaaattagagggaaggcaaaaaaaagaaagaaacagagaggagagcgatttgcacatatccccagtttggcaaaagctttgtccattgcaaggcacctgtataactacaacaaagggatcaaggcacatcactcgaaatcgaatgtccagaggtgagtttgttccatatatagatgtttaaataaggtcggttgtcccgtttacacggggcaaaagagcatccctaacaagcaagaactttttcctgcctgaatgcgatacatgttggaagtcttgaagcaagctccggtatgtaaagctcaaaggtgaggcaaaagggcgagacctgtacagcttcggctcctcaagttttgttgcgggtaatttactcagagagtcaagaacaggaagcagcatgaaacatttgcaccgaggatggcttaggacgcctctctctcggtgcctctttcaccagagggtatttgctgggaatctgaatgggtgatcctccgagacctccctgagacattgtcaggcgatacttctgaatgtgctggtacaggtgccagcatacgtcgggcagacacatcaccagttggtgatgtcgcgagaccatacatcacagttcccattggatgatcaaatttgcaattcggaccaaacttgcagatgccatagcgagaatagaatgtgcatatgggctctccctgcaagcaggaaaaagaaacagaggattaggcaacacttgtccatcttctatattgtatgtatttatgttttatcggttttgaacattgcatgataaacaaccagcaattactaaaatgtgcattggtacgctccatgcatagctattgtcgagaaatcaactacacataatagaatcacatgcagaatgccaagtcatcactcagagtaactaatcactaatcagcagtaagtaggcatcgtaggcgtgatgataacagtatcaataaaagaaagtacaaaaactagtgtatgcaaagtaaatttagaaatgtgccaatcttgaatatagtaccatttacacattattgtattcgaatgtagatcaacaatcaaaattagcatgggaattctcagtcaagatgcacaagtggaaatctaattcgccccatgggattctgcttagccatcaagttccttcaaaaaaaaacagcgaataccaaggaggactggtgcaaataatacactaaatggtttcactttctgcaaagacaactaagatctaactaatttacaccacactccctgtaattattttgtacatgtttatatatttaatatattaacatagtaggagtctctcctgatgtctcttgtcaaaaaacaattacatcacatgacaacaaagagttctttaggacagatttatttaaactacactacacggattagtttattttttctaataccctctgtcaaaggaaccaccactccctatggaaaaagggatttgccgcatgaggttttatagacaaaatgaggccacaaagctaaggcagcatacagcaaaaaattaaatgaccatgttgcaaagaatacatgaacttaggaacttagggtgtacgatgctataaaagactcccttaccggacgcagtggaagacctaatgagctcaacgcacagtttggagtagggataattctctccttgggatgatggaacttgcatacagcaccaaacttacagtccccagtcttcatatagaactggcattctggttggtcaggtcgctctggaaatatgctctccctctgtactgtatatagcccaagaggaacagaaccagcttggtatgatgaaaacattccctggtcacccatgttaggtgtttcactgtgacgtgagccagtatagtattgtgcacctccagctgtcctctgttgatcgtctgaggatgaagaaccaatttgtgcctaagaaaacatAaaaatagttgagcaatcacatatttgacatgaaagctacagaaatgatggcacgacaaaatcaacaattaatctcaaggtaaatgattttccatgtaaaaatattaagctcatcactctaggcatgtggatcaacacaaatatacaataagaaaataatgTtttttttttactttaagaaaaataatgcttgttaagacaatagatttaaatagcctctaatggatgacatgaacaagccagcatacaatagatttatataaaaacaggtaacactttgttgcgcagagtgatattatagccaatattttcattattgttattctaaagaaataaggatcacacttcaagtgatcttgtaaggatatgttggagatctattacccaacagaaaggcagaaataattatacagatgtgtttattaaatattcaattctttttgctgcggaaaagtgccaatcaggtaacaattggtgacaaacttcaaggtaattagcagtgtgtaactgatgacaaaatgtggatgctgaacactgcaacgggtgaagctgcctcttctttcctaccacaatatgtggtagaaaaagggaatacaaaaaacagattaaatagagaccataagaccatagtcactttgacagcattctcaataaaccaatgaattgcaccatctactccactggatgagtatacatttaatagacgatcgtaaatgtcaaagtgggagaaataaacatactgcataaggattccaccctggaacttgaacgagccctggaggaacaatcacttgtgcatagcttgaatggcctggccaccttggacttgcaataaacgaagcagatcttgacaagggccagtttgttacagcccctgggtaagtatgctgactaggagaagtaactgactgtccaggtgaataaacagagccacgtacagcaaccatcgtattagatggctgtggatgatgaaacttacatgtgctcccaaatttgcactgtccggttcttaaataataagcacattccttctcattctgtggtaataaaatttaggtaactaaaacaaatattgcagagaagttgcagaataatgaactatccttaagtccaacaagtaatagtaaaagataatggaaatttagaacaaaccggccgcaatgggtagcctaaagcattcagctgtactcgggttgcaattgcagctttttctcgggggtggtgaaacttgcatgttgctccaaatttgcatgttccagtcttcaaataatactgaaaaaaaaaggtgaagcacaataaataatacagaaaacaatgctgctaagtcgtcaaagataagatatactaatagacagctttaagcagctacattatgaatatatgtcgtccaaaataccaaaacagtccatatcatcatgcaatgaacaagaaattcaacgaactaaactaaatcacacttgctaagagttgggttggatgcaagtcattctactccagtttatttggaaaaatccaagctatggcttgcaatagaaaaagatgccgacattacactcaagatcatgctctttgatcttgtttaagatactacaacttcaagcgccaaaaaacatcaggtaaaagcatcagaaagtaaaatagtaaggagttgtctgtgataatgtgcatgaggcaactctggtgttggtattcaccaagctcaagagaattagcgctgcaattaaaggatgatttcaacccatgtggctgccttcatcaaagtaaccacttagatcatacacttatgaaactatttatctttaatgccctcaacttcttactgaagaacagctaaggaagaacctctaagacacctgcggcttgacagggcacaggataactgaagaacagcgataaaacaattttaggcaatattgtttcaaatattaccagcaaaaaaatattgtttaaaatagctcaaaaataagggcgcaatgtgaaactatcaagtatgttaaaagttaacgtcacgagtataaactttcaaatatcagagcattaaaagatatgaaacaccaccaatccgttactgttacatgatcaaaagtatcaaaattgaggaaactgttagaatggaaaatctcacttgacattcaggttgaccaattctttgaggatattcccccttcatccttgcagcagcaacagcctgatgatcaaaaccatttacatcaaacaaaggtaagaatttatagaaagtagcacaaaaatggtgagttccataagctttccaacttacagctttgaaaatattatcatgctcctaaactatgcaaatctaataaaaaatctatgaattccaaaagatagaaaatagaaaaatatttacaagtcatttgaagaggttttcaaaacagccatatgcctacaaaggaggagccaagctgttatctggttttcactgttgtgttaatttttcaggaaaataactcgcacatgaactccaaaagaaccaatctagataaattcttgtaattagaagggaatcgctacagaatcaacaaagtacttcctctgtcaaaaattcaaacaatttacatagattcaacttgtagcattagtctttaccacactatatttgtaaaaattgtagaagacattaatgctaatgaaaaatatactctaatgtggaaaaaaaaaagggtacaagaatagtttagtgtaccatcttacgatctgctgggtgattaaatttacaggtcatcccaaacctgcacaagccagtcctcatgtaataactacaatctggttctccaatacgctctgggtatggcccagcttccatagcttctcctagattcatctgccacattgcctctgcaatttaattataacaataccgatcactcacaaaaaattgcagcaaaatctataagctggtagattattgacatcaaaggagagaaggtagcatcaagaaaagtggaaaatggacaccaagaattcctggcaacatcattcaacaatacgactactaatccatgtcattggataccttaagactgttgcagggaataaacaccacatgaagacggacatagagagagctggactggatattatgaagtgacaaaataagctatatttagccagtataacgggaaaaaaaattaatttacataaaacaaatagagaactactgaacttaatcatactaatgatcctctgtaccctcaaatcacataaataattatcatcacaatacacagcctcagaactcaaaagatagagaaaagttgcaccaagattaggaaatagatttccacccatattctttctacagaaatcaataaaattcattcattctatctcgagtaaaaaccgagtcgtagtcagttcatcatgccctctatatcattataataagtgattcactatcactacataactatctaatactctgaaagcttcgtcttcagctgttcagatactgacaagaaagcatctgcaataaatacaattacatcctagaagacacttaacattttaacacttttcgcagaaaagactggtattggcaacagtaacaagagttcccaaaaaagccttaaattaagctgaatcctaatttcattgtagctgtggaccccagtataaaatcagacctaaacctcttcgccagaatcaaataacttaaattccaacacaaacaggaaactttgcaaaactgaactacacccaactcaaacagcaccataaatcagattaactcaaggttcaaccaacaaataaattacgcaaaccaaaaatgatggaacaccacaatcacacaagtattccccgcatttaaaatgaaaattcagatcacttgctacctctccgcaatttcacttccaagaccagctaatcccaaaaatgttcctcccatccaaaacattcacctttagttcttcaaatacccatgataaaacaaagtaagattaacatatccatctagaagagtgcaaaccaaatgatgagatgacatgtatttctagagtttcacttttctgcacccaaatcaaaaactccactacaaggaccaaatcagactcaaacactgccttcaaacaaaaatttcaccatacaaccatacttcaagaaacataaatccataagaagcgtacttggaaacaaaagcaagatccgagatccaaatcctacaaaccctgcagtttcaaggattccattccttagaaaagaaagaccccaaatgaaatagccatacaagtacactaatcaccagctagacaggctacaccatagaacaaagacaaagacctaggagggtgcagcacaccttcatcagaactatggggcccaatcacagaggctgcaacagcaactgcggtagcagcggctgacaagccctccctggcagcaccaaagctgatcctgcccatcaatggtgtcgccttcacagccacccgaggcatcggatcagaaatttaatctcaggtaattgcatacttggtataaatagttcaggaagaaccatgtaccaataaatataatcataaaacaacagaaacggcaaccaaaaaggattaaagtgttcccttttctgcaaaaagatccctataccacttccgcttcagcgttatcagaaaaaaaggaagaactgaatttattttgtagaacatacctcacagcacgtcaagtgctaaagatgcacaaagaaatagttaaatttatagtaacggttcaaaacaattgaaagtactgtcataactcatgagataaggatgggttgtcacactgataaacttttaataaattctttcatgtaccaaatctttaagaacagccatactgcttccattgtggcgttaccaaaaagacgacaaaagtgaatttatcattttgtacacgtgaacacaaacaaatgaaattaaacttgctaattttgcttatgagaaaacaacccaaaatattgcagaactccaaattatcacagaagaatgaaaagtgtaactaattaaattttgtctgcaagaagaatacggtcagagtctttaggggcagcgtaacttcaagtcacaaatactagcaggcaagctatcgtaccaatactctgaccaatctttcaaaactgaagtatcaatacctgatcctgcattgtgcatcaggtcatcacctcaccagtccattttttaacagagaagggtagtaggtctttctaaacaaagtatcctcacaaaaacctgccatatcctccaaagacctttaatgtactggagttcaaaattttgagtcgtgattacaaccataccatcaatctatataaaagaaatgcagccaaatttagaaatgttcatcctgatacacttcaacaagagtgatacAaaaaaaataaacccaaaaaggccaaaaatatatgtaaacacaccccatgtctatgtgcctttcaagaacccttggtggtaactcctttctacctgataaatagctcggatacttgcccagaacattcacaaaccataacagccaggttgaaaacatactgatgtccatatcttacttcaaccacacaacataattgagtaaacatttacagaatgatagcttgagtccaaatgaaatttaaccgaaccactgcctgccctgccctcatgattctttccaaaaccaacaaaaacattaaaaaccttccctatcttccaaaaacaatgtattctttccatttgagattcttactattctcatggaaacaccatcgacaatcaccgacatccaatagacgcacaaacaaaaattcacatagaactcaccaccgacaacgtatccacattataaaacatatcagcattgtgagaatgaccaaaacagagcgctcctgcatggagtgggataccaaatcagctcagaaacctcgccttttccgacccgatgcaccgttccaatccagcaagctggattgacttctccaatatggtacatgagcccaaacataggaattaatcaccgaatcgagcggctccgccgcagagccagcactgcgttggaacaccgtccgccatcaaaaattaaccgaaaccctcaaccccccaccacacccccgcccaccgacagcacagtgttcaccagcattggtcggccgcacgcgtgccctcccctccccaccaccccccgcctgccgcccaaaccctagcacccgcgccaccgacacccccgcttccccacgaggagaaccaatcgaaacctacccccagctggcacccgcctccgccgcttccccccacacccaccctgacggaaaaggaaagcgaacgacgacgacgacgacgacgacgaggatgaggatgagggggtcatcaccttcgtcgaccacgtggggcccgatcgtcgcggcagcagcagcagcggcggcggcggcggaggaggaagagccctccccaacgccgccggcggacggcgccgccgccatcaccgcggcgcctgcagcagcagcggcggcagcatcagatcgccgcgccgtcgcgtgcacgcgcgcgggggtaagggcggaggaggaggaggcggaggcggaagagggaggaaggaaggggaatgagaggaacgaggcgtccccgttcggacagccagtcgtttttgttcctctcctcccttccccgctttttttcaccgccgcgcggccgcgccaaccaacccagtcaact
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| CDS seq | atggcggcggcgccgtccgccggcggcgttggggagggctcttcctcctccgccgccgccgccgctgctgctgctgccgcgacgatcgggccccacgtggtcgacgaagaggcaatgtggcagatgaatctaggagaagctatggaagctgggccatacccagagcgtattggagaaccagattgtagttattacatgaggactggcttgtgcaggtttgggatgacctgtaaatttaatcacccagcagatcgtaagatggctgttgctgctgcaaggatgaagggggaatatcctcaaagaattggtcaacctgaatgtcaatattatttgaagactggaacatgcaaatttggagcaacatgcaagtttcaccacccccgagaaaaagctgcaattgcaacccgagtacagctgaatgctttaggctacccattgcggccgaatgagaaggaatgtgcttattatttaagaaccggacagtgcaaatttgggagcacatgtaagtttcatcatccacagccatctaatacgatggttgctgtacgtggctctgtttattcacctggacagtcagttacttctcctagtcagcatacttacccaggggctgtaacaaactggcccttgtcaagatctgcttcgtttattgcaagtccaaggtggccaggccattcaagctatgcacaagtgattgttcctccagggctcgttcaagttccagggtggaatccttatgcagcacaaattggttcttcatcctcagacgatcaacagaggacagctggaggtgcacaatactatactggctcacgtcacagtgaaacacctaacatgggtgaccagggaatgttttcatcataccaagctggttctgttcctcttgggctatatacagtacagagggagagcatatttccagagcgacctgaccaaccagaatgccagttctatatgaagactggggactgtaagtttggtgctgtatgcaagttccatcatcccaaggagagaattatccctactccaaactgtgcgttgagctcattaggtcttccactgcgtccgggagagcccatatgcacattctattctcgctatggcatctgcaagtttggtccgaattgcaaatttgatcatccaatgggaactgtgatgtatggtctcgcgacatcaccaactggtgatgtgtctgcccgacgtatgctggcacctgtaccagcacattcagaagtatcgcctgacaatgtctcagggaggtctcggaggatcacccattcagattcccagcaaataccctctggtgaaagaggcaccgagagagaggcgtcctaa
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| Protein seq | MAAAPSAGGVGEGSSSSAAAAAAAAAATIGPHVVDEEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGDVSARRMLAPVPAHSEVSPDNVSGRSRRITHSDSQQIPSGERGTEREAS |
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| Function | Zinc finger CCCH domain-containing protein 63 [UniProtKB/Swiss-Prot:Q2R4J4] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0013610 | OsNaBo_11g0013610.01 | Chr11 | 17829097 | 17838285 | - | NAM | ||
| CDS seq | atggcggcggcgccgtccgccggcggcgttggggagggctcttcctcctccgccgccgccgccgctgctgctgctgccgcgacgatcgggccccacgtggtcgacgaagaggcaatgtggcagatgaatctaggagaagctatggaagctgggccatacccagagcgtattggagaaccagattgtagttattacatgaggactggcttgtgcaggtttgggatgacctgtaaatttaatcacccagcagatcgtaagatggctgttgctgctgcaaggatgaagggggaatatcctcaaagaattggtcaacctgaatgtcaatattatttgaagactggaacatgcaaatttggagcaacatgcaagtttcaccacccccgagaaaaagctgcaattgcaacccgagtacagctgaatgctttaggctacccattgcggccgaatgagaaggaatgtgcttattatttaagaaccggacagtgcaaatttgggagcacatgtaagtttcatcatccacagccatctaatacgatggttgctgtacgtggctctgtttattcacctggacagtcagttacttctcctagtcagcatacttacccaggggctgtaacaaactggcccttgtcaagatctgcttcgtttattgcaagtccaaggtggccaggccattcaagctatgcacaagtgattgttcctccagggctcgttcaagttccagggtggaatccttatgcagcacaaattggttcttcatcctcagacgatcaacagaggacagctggaggtgcacaatactatactggctcacgtcacagtgaaacacctaacatgggtgaccagggaatgttttcatcataccaagctggttctgttcctcttgggctatatacagtacagagggagagcatatttccagagcgacctgaccaaccagaatgccagttctatatgaagactggggactgtaagtttggtgctgtatgcaagttccatcatcccaaggagagaattatccctactccaaactgtgcgttgagctcattaggtcttccactgcgtccgggagagcccatatgcacattctattctcgctatggcatctgcaagtttggtccgaattgcaaatttgatcatccaatgggaactgtgatgtatggtctcgcgacatcaccaactggtgatgtgtctgcccgacgtatgctggcacctgtaccagcacattcagaagtatcgcctgacaatgtctcagggaggtctcggaggatcacccattcagattcccagcaaataccctctggtgaaagaggcaccgagagagaggcgtcctaa
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| Protein seq | MAAAPSAGGVGEGSSSSAAAAAAAAAATIGPHVVDEEAMWQMNLGEAMEAGPYPERIGEPDCSYYMRTGLCRFGMTCKFNHPADRKMAVAAARMKGEYPQRIGQPECQYYLKTGTCKFGATCKFHHPREKAAIATRVQLNALGYPLRPNEKECAYYLRTGQCKFGSTCKFHHPQPSNTMVAVRGSVYSPGQSVTSPSQHTYPGAVTNWPLSRSASFIASPRWPGHSSYAQVIVPPGLVQVPGWNPYAAQIGSSSSDDQQRTAGGAQYYTGSRHSETPNMGDQGMFSSYQAGSVPLGLYTVQRESIFPERPDQPECQFYMKTGDCKFGAVCKFHHPKERIIPTPNCALSSLGLPLRPGEPICTFYSRYGICKFGPNCKFDHPMGTVMYGLATSPTGDVSARRMLAPVPAHSEVSPDNVSGRSRRITHSDSQQIPSGERGTEREAS
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 3.124643 | 25.111979 | 20.874485 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0472000 | RBH | 7.418645 | 7.819122 | 18.380457 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g28270 | RBH | 3.217359 | 3.341183 | 3.957600 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0472000 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0013670 | RBH | 1.016300 | 22.488863 | 11.591086 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0013610 | RBH | 1.074587 | 6.589715 | 4.648066 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0013570 | RBH | 1.187303 | 19.875267 | 22.889984 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0013340 | RBH | 0.244877 | 0.384019 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0013640 | RBH | 6.406742 | 15.919596 | 30.234119 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0250500 | RBH | 10.7106465 | 14.36541 | 12.975349 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0013610 | RBH | 0.692177 | 1.214036 | 2.887869 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0265500 | RBH | 27.934327 | 22.2776145 | 34.250788 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0013710 | RBH | 0.536830 | 0.394510 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0013790 | RBH | 0.889497 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0013430 | RBH | 10.123114 | 25.147306 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0013260 | RBH | 1.382267 | 0.0 | 3.716163 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0013590 | RBH | 1.106164 | 7.058247 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G013420 | RBH | 0.717754 | 4.123405 | 4.954402 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0009990 | RBH | 1.529601 | 24.601183 | 13.502533 |
