Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0009020 | OGI:11023520 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:8086310-8089593 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | gaataatgttcagagtacattatttagattatatatatgaagttaaagatttaacaatgtatgctattattgatcaagcaacacgtgacacacatatttgaacaataacgataaaatatactatcatttacaagatgtatcgattatatcagaccatgtcaaggaactctgatttgaaagcttggcccaaccgaattctgagctttaagacaggccattcaccgagcaccttagtgagaattggcactaaaacagcaacagagcaaattccaacagctaaccatagcagccgaggggccaataccgtgtataaacctgttgcaaatgctgtagttgttgccatgtacgcaaaccacataagcttcttggtgaaggatctgtagtaaagcaagaaatcgagatcctcccatcttgctatgatgcatatgaacgcaacagcaagtgaggcgcacattgctaaggtgtctgatatcaggaatgccttaaaagcaatgttccttgccattataggaagtccctggcttccagcatcactgctgtatcctccaggcagggtgaaagcagcagcaaaggtaattgttgcgatgaggatcgccactagcgaagtgttgcttgtgtatgtttgagtcagcgaccttgcatccttccttgacgcattgatcaacttttctttggcttcctcatgaagattataaacggattttgcatttggaggatcagctttaatcataagcattgacacttcattctgcattaatacagagagaggaataaatggagttcacaatatgtctaaaatatcagctaatctgttacatgaataaatttttctgtatggtcgttgatgatatatgatgaagtactacacttaaccagaagggttcatgaacccttcagaaagccaaaaaagatttcctctggggcttgggggtgtgagggactgaggggccaatagatctgaaattaagaaatattttgtccccccaaaaaagttgaaattcaaaagaattttaccaagtttaaatatttttttcctaaatgcaaaaaatgaaactttcaggcgaaatagtttcgtgcaatccctgcttacagagataattttgtgctactgtaacataatgaggaatataaataagaactaccacataaatgtgtgtgaacatcaatgcttttgatagtaagttataatctgaaaagatgcatcaccaaagcttgctgttgtaccatcaattattggggctagaatgtgcctgcaactattatagctggtgagatttgataaggtgcaatggcacagaaacaagaatcctttgaaactgtggggatggcatggcatcatttcacaatttctctgtttgctaccatcttgcaaagttaccatataaaattcaaattgttccagatgtttttgttgcaagtatgtgtttggttttactccaaattaggcaagatcattgtgtaaacagtaaagtgttttgaaatattaagttttaattaatcggattattcttttcacgggagctgagatgttccctaattaatgtttgttaatttcttgatagtaaaatcaagttattagcggtgattgcaaaatggacaaaatgaccacatcatcaacggaaaaaaaaatcgacctatggcaaacatacatacccagtttaatgtcttcgcactatccaaggcatcccgtaattcccaagcggctgcattaccgtcactgccaagaattgtcaagtctattttcttgtcaagtaaagcagcaacaattttcggatcacacttctggacggcataatgtagagctgttttccccttgctgctacgcatgttcacaagtttctgaagtcgtggttccccaaggataaactcaacgaattccatattacctgatttgacagctttatgaagacatgtccacccatcttttttgcaatatggagcatctgggcaatatttgataatctctcgggcaacagcaacatgacctcgatgtgcagcagaaaggaggagaggataaccattttttctgttaataacatacccttgagatctgtcatgtttcaacaatactcgtagcatgtcgatctttccccaacgtacagctagctgaattggagtattaccatccttattttcttctgtgaccagatttgggcgttcaacgatgattcttttagcaatatctgaggacaaatcaaggcatgaaagatgtatcaatttgaggattatcaaagtttatattgtcttgagaaggtaatatgagataccacactttctagtgttagtttatggtgcctccttgcacttacctattattgaggtaccgagaggtatcatatataaatactaaaaagtatggcatctcctcaaggacaatacaaagcatatgtccccaaggatcttaaaaagctcaaagcataaagtttcatgatactaggctagtttgctatgtgatctcaattgaactccatagttctcacctggatttccatttctaatagctgcttggaggtatcatatataaatactaaaaagtatgggatctcctcaaggacaatacaaagcatgtccccaaggatcttaaaaagctcaaagcataaagtttcatgatactaggctagtttgccatgtgatctcaattgaactccatagttctcacctggatttccatttctaatagctgcatggagagcattgtagccgtaggttcctgaatgagaagaaccatcaattcccaacagtttctcaaaaatatctgtaaacttagaatccctcatcatcaacgcaatgtacatgggagattcgccgtatttgttgacatctttggacaaggcaggctgagttgctatcaactccagtgccaggtccttgtggccgttgcgaatggcatggtgcagtgcattacatttgtgcttgtcctgtttcaagattacctcactgaatccttgttcatggcagtatttgagtagaaaagcagctaaagtaacatggccacttgttatggcagtaagcagtggcgtctcattcatcacattcacagtagtgagtagtttcttcttcacggttggatcctgtggaagtgaaagaacatctttgcaaaattccaaatggccacacatggaagatatatgaagacatgtgtttccttgtggattttttccaagcagaattgtaggatcatgtgaatccatgtacttcatcttcattgacctggtatcaccagatatggccgcttccaggagctcccaatctatggttgcagtactggctgcacaggctgccat
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| CDS seq | atggcagcctgtgcagccagtactgcaaccatagattgggagctcctggaagcggccatatctggtgataccaggtcaatgaagatgaagtacatggattcacatgatcctacaattctgcttggaaaaaatccacaaggaaacacatgtcttcatatatcttccatgtgtggccatttggaattttgcaaagatgttctttcacttccacaggatccaaccgtgaagaagaaactactcactactgtgaatgtgatgaatgagacgccactgcttactgccataacaagtggccatgttactttagctgcttttctactcaaatactgccatgaacaaggattcagtgaggtaatcttgaaacaggacaagcacaaatgtaatgcactgcaccatgccattcgcaacggccacaaggacctggcactggagttgatagcaactcagcctgccttgtccaaagatgtcaacaaatacggcgaatctcccatgtacattgcgttgatgatgagggattctaagtttacagatatttttgagaaactgttgggaattgatggttcttctcattcaggaacctacggctacaatgctctccatgcagctattagaaatggaaatccagatctcaagggtatgttattaacagaaaaaatggttatcctctcctcctttctgctgcacatcgaggtcatgttgctgttgcccgagagattatcaaatattgcccagatgctccatattgcaaaaaagatgggtggacatgtcttcataaagctgtcaaatcagaaacttgtgaacatgcgtagcagcaaggggaaaacagctctacattatgccgtccagaagtgtgatccgaaaattgttgctgctttacttgacaagaaaatagacttgacaattcttggcagtgacggtaatgcagccgcttgggaattacgggatgccttggatagtgcgaagacattaaactggaatgaagtgtcaatgcttatgattaaagctgatcctccaaatgcaaaatccgtttataatcttcatgaggaagccaaagaaaagttgatcaatgcgtcaaggaaggatgcaaggtcgctgactcaaacatacacaagcaacacttcgctagtggcgatcctcatcgcaacaattacctttgctgctgctttcaccctgcctggaggatacagcagtgatgctggaagccagggacttcctataatggcaaggaacattgcttttaaggcattcctgatatcagacaccttagcaatgtgcgcctcacttgctgttgcgttcatatgcatcatagcaagatgggaggatctcgatttcttgctttactacagatccttcaccaagaagcttatgtggtttgcgtacatggcaacaactacagcatttgcaacaggtttatacacggtattggcccctcggctgctatggttagctgttggaatttgctctgttgctgttttagtgccaattctcactaaggtgctcggtgaatggcctgtcttaaagctcagaattcggttgggccaagctttcaaatcagagttccttgacatggtctga
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| Protein seq | MAACAASTATIDWELLEAAISGDTRSMKMKYMDSHDPTILLGKNPQGNTCLHISSMCGHLEFCKDVLSLPQDPTVKKKLLTTVNVMNETPLLTAITSGHVTLAAFLLKYCHEQGFSEVILKQDKHKCNALHHAIRNGHKDLALELIATQPALSKDVNKYGESPMYIALMMRDSKFTDIFEKLLGIDGSSHSGTYGYNALHAAIRNGNPDLKGMLLTEKMVILSSFLLHIEVMLLLPERLSNIAQMLHIAKKMGGHVFIKLSNQKLVNMRSSKGKTALHYAVQKCDPKIVAALLDKKIDLTILGSDGNAAAWELRDALDSAKTLNWNEVSMLMIKADPPNAKSVYNLHEEAKEKLINASRKDARSLTQTYTSNTSLVAILIATITFAAAFTLPGGYSSDAGSQGLPIMARNIAFKAFLISDTLAMCASLAVAFICIIARWEDLDFLLYYRSFTKKLMWFAYMATTTAFATGLYTVLAPRLLWLAVGICSVAVLVPILTKVLGEWPVLKLRIRLGQAFKSEFLDMV |
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| Function | Ankyrin repeat-containing protein ITN1 [UniProtKB/Swiss-Prot:Q9C7A2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0009020 | OsNaBo_11g0009020.01 | Chr11 | 8086310 | 8089593 | - | NAM | ||
| CDS seq | atggcagcctgtgcagccagtactgcaaccatagattgggagctcctggaagcggccatatctggtgataccaggtcaatgaagatgaagtacatggattcacatgatcctacaattctgcttggaaaaaatccacaaggaaacacatgtcttcatatatcttccatgtgtggccatttggaattttgcaaagatgttctttcacttccacaggatccaaccgtgaagaagaaactactcactactgtgaatgtgatgaatgagacgccactgcttactgccataacaagtggccatgttactttagctgcttttctactcaaatactgccatgaacaaggattcagtgaggtaatcttgaaacaggacaagcacaaatgtaatgcactgcaccatgccattcgcaacggccacaaggacctggcactggagttgatagcaactcagcctgccttgtccaaagatgtcaacaaatacggcgaatctcccatgtacattgcgttgatgatgagggattctaagtttacagatatttttgagaaactgttgggaattgatggttcttctcattcaggaacctacggctacaatgctctccatgcagctattagaaatggaaatccagatctcaagggtatgttattaacagaaaaaatggttatcctctcctcctttctgctgcacatcgaggtcatgttgctgttgcccgagagattatcaaatattgcccagatgctccatattgcaaaaaagatgggtggacatgtcttcataaagctgtcaaatcagaaacttgtgaacatgcgtagcagcaaggggaaaacagctctacattatgccgtccagaagtgtgatccgaaaattgttgctgctttacttgacaagaaaatagacttgacaattcttggcagtgacggtaatgcagccgcttgggaattacgggatgccttggatagtgcgaagacattaaactggaatgaagtgtcaatgcttatgattaaagctgatcctccaaatgcaaaatccgtttataatcttcatgaggaagccaaagaaaagttgatcaatgcgtcaaggaaggatgcaaggtcgctgactcaaacatacacaagcaacacttcgctagtggcgatcctcatcgcaacaattacctttgctgctgctttcaccctgcctggaggatacagcagtgatgctggaagccagggacttcctataatggcaaggaacattgcttttaaggcattcctgatatcagacaccttagcaatgtgcgcctcacttgctgttgcgttcatatgcatcatagcaagatgggaggatctcgatttcttgctttactacagatccttcaccaagaagcttatgtggtttgcgtacatggcaacaactacagcatttgcaacaggtttatacacggtattggcccctcggctgctatggttagctgttggaatttgctctgttgctgttttagtgccaattctcactaaggtgctcggtgaatggcctgtcttaaagctcagaattcggttgggccaagctttcaaatcagagttccttgacatggtctga
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| Protein seq | MAACAASTATIDWELLEAAISGDTRSMKMKYMDSHDPTILLGKNPQGNTCLHISSMCGHLEFCKDVLSLPQDPTVKKKLLTTVNVMNETPLLTAITSGHVTLAAFLLKYCHEQGFSEVILKQDKHKCNALHHAIRNGHKDLALELIATQPALSKDVNKYGESPMYIALMMRDSKFTDIFEKLLGIDGSSHSGTYGYNALHAAIRNGNPDLKGMLLTEKMVILSSFLLHIEVMLLLPERLSNIAQMLHIAKKMGGHVFIKLSNQKLVNMRSSKGKTALHYAVQKCDPKIVAALLDKKIDLTILGSDGNAAAWELRDALDSAKTLNWNEVSMLMIKADPPNAKSVYNLHEEAKEKLINASRKDARSLTQTYTSNTSLVAILIATITFAAAFTLPGGYSSDAGSQGLPIMARNIAFKAFLISDTLAMCASLAVAFICIIARWEDLDFLLYYRSFTKKLMWFAYMATTTAFATGLYTVLAPRLLWLAVGICSVAVLVPILTKVLGEWPVLKLRIRLGQAFKSEFLDMV
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.829722 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0251400 | RBH | 9.025217 | 9.758815 | 21.096256 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g14544 | RBH | 6.364930 | 7.742886 | 4.635520 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0251400 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0009220 | RBH | 10.079891 | 89.328224 | 28.377607 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0009110 | RBH | 2.306404 | 12.198385 | 11.978293 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0009140 | RBH | 14.812918 | 39.165421 | 38.159897 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0008960 | RBH | 2.588560 | 1.532526 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0009030 | RBH | 0.0 | 0.0 | 0.000000 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0123000 | RBH | 0.3961385 | 0.106379 | 0.5165925 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0009030 | RBH | 0.0 | 0.0 | 0.060013 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0125800 | RBH | 0.438895 | 0.0566355 | 3.7906985 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0009110 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0009220 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0009100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0008990 | RBH | 0.0 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0009120 | RBH | 0.0 | 0.0 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G009200 | RBH | 5.764749 | 7.652774 | 7.837796 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0008900 | RBH | 0.0 | 0.0 | 0.0 |
