Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0007960 | OGI:11020640 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:6918646-6919062 | ||||||||
| Gene Symbol | OsSRP-GAA, OrysaZ6a, - | ||||||||||
| DNA seq | atgatgatacctccaaggaggAaacggcacccacAagcgttgatatcatcaacctagAaaaacactaggcaaggttttcacccgagactctctcAaattgctccaccaccaaaccctcatcgtgttgcctggacgtctgttgagggtcatcgttgccgagcttgcaagacaagcagctccgactctgcctcaacagtcaatcacattgcagctcgaccagagatcacctCAcacacaggaacccaactgcagcaaacctacggcgcggccgacgaccAGcgagacaggacgccggaaaccAactccacccgccaCccctaccacacaaAGgagctccccggcaatgactggaagcagcctagcctAagaagggaggaGgacctaagaagaGggcagcggacGccacaccgccggtga
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| CDS seq | atgatgatacctccaaggaggAaacggcacccacAagcgcaaggttttcacccgagactctctcAaattgctccaccaccaaaccctcatcgtgttgcctggacgtctgttgagggtcatcgttgccgagcttgcaagacaagcagctccgactctgcctcaacagtcaatcacattgcagctcgaccagagatcacctCAcacacaggaacccaactgcagcaaacctacggcgcggccgacgaccAGcgagacaggacgccggaaaccAactccacccgccaCccctaccacacaaAGgagctccccggcaatgactggaagcagcctagcctAagaagggaggaGgacctaagaagaGggcagcggacGccacaccgccggtga |
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| Protein seq | MMIPPRRKRHPQAQGFHPRLSQIAPPPNPHRVAWTSVEGHRCRACKTSSSDSASTVNHIAARPEITSHTGTQLQQTYGAADDQRDRTPETNSTRHPYHTKELPGNDWKQPSLRREEDLRRGQRTPHRR |
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| Function | - | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0007960 | OsNaBo_11g0007960.01 | Chr11 | 6918646 | 6919062 | + | NAM | ||
| CDS seq | atgatgatacctccaaggaggAaacggcacccacAagcgcaaggttttcacccgagactctctcAaattgctccaccaccaaaccctcatcgtgttgcctggacgtctgttgagggtcatcgttgccgagcttgcaagacaagcagctccgactctgcctcaacagtcaatcacattgcagctcgaccagagatcacctCAcacacaggaacccaactgcagcaaacctacggcgcggccgacgaccAGcgagacaggacgccggaaaccAactccacccgccaCccctaccacacaaAGgagctccccggcaatgactggaagcagcctagcctAagaagggaggaGgacctaagaagaGggcagcggacGccacaccgccggtga
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| Protein seq | MMIPPRRKRHPQAQGFHPRLSQIAPPPNPHRVAWTSVEGHRCRACKTSSSDSASTVNHIAARPEITSHTGTQLQQTYGAADDQRDRTPETNSTRHPYHTKELPGNDWKQPSLRREEDLRRGQRTPHRR |
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | MSU | NA | NA | NA | NA | NA |
| Nipponbare | IRGSP 1.0 | RAP-db | NA | NA | NA | NA | NA |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0008190 | RBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0000190 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0000210 | RBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007920 | RBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007950 | RBH | 0.0 | 0.0 | 0.310464 |
| Minghui 63 | MH63RS3 | HZAU | NA | NA | NA | NA | NA |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007990 | RBH | 0.0 | 0.0 | 0.028020 |
| Zhenshan 97 | ZS97RS3 | HZAU | NA | NA | NA | NA | NA |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0008100 | RBH | 0.0 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G008130 | RBH | 0.0 | 0.0 | 0.101193 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | NA | NA | NA | NA | NA |
