Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0007540 | OGI:11019210 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:6537952-6539919 | ||||||||
| Gene Symbol | OsSRP-PLP, OrysaZ9 | ||||||||||
| DNA seq | gcattcaaatggcatacttttttataaaagttttgccagtgtgttacaaaaagtgagaaaaataaatactcatgtaccaaaacttctgccaggcagactagcaatgatagagatactccaatacattagtgcaaacaggtgataaaagactacaacctgatgctatgtccgtgatgaagggtcaagcacatgccccatgaatattactgttccagagacctcctccctaatcatgaagaagaacggatggtcggccttgaagtgttgtgctggcaaaggcttgcccaagcccattgatactgaagtttcttcaattcctttttgatcaacctccaaaaccgatttatgaagtacatcagacagaaacagaggaccacttgagtcatcttccttgatcatatcagagaattcagcttcccggaggaaaggtagttcaagccccatatctttcagaaaatcctttacatcgatctggaaagatattttaaagttgggcaccgagatacccacatggcatttctctgttggtaaatgttgttctaagaacattggttcagagaaaatcttctgggttaattcaaacaagccatcatgatcatcagggaggaaaatgtacatggaaaacttcctttcattctttccttgcttgtaaggaagcttaataactttaaagttatcatggacggcaaaaagacgtgttctgtcatattccacaaatgggacttcgacagatgttccatccaggcagtagaacttttgttcagtagtcatccgcaaatcatctctatccagccatctgcccctaaagtacagtgcactcccaagaacaagtcctgtattctggtcaattgttccagcaggaagaagtgttgtaacagtaccttttgtggaatctttgacccacgaattaatttgatcaggagcatcttccggcttcaaagatcaatagaacagaaattggttaaatttcagcattgggaaatgggaagcccaaaacatgttaacaataagatgcatcacaaggtcgcagttcactcttcacaaagaaaaacagcaataaaaaaataatcaggaaaggcactttcttgggtagaataactgtaacaactaagcagaataatactattgctttcgaaacatagcgccagtcattgagatttctttgccatttccaacagaaccaaaacatttttaatagaacagattgcaacgaggctgttatagtgagatacaacaatgttcatcaaaccagttaaacacacttaagtcaaaatacctcaagtcaacaaacaaattgagatattttgtgatactaaccttaggcacagaaatattaccaagcacatgatgggcataacattattactctgcagtattagctgaaagagggcattcgatcagatataccttgttcttgaagtcggccttcttcgccgcagagccgtacacattgccggcgagtcccacgaactccggcgagagactcctcgatgcgtcggcccagacgccgcccgcgaacgccagccgcgggccgccggaggtggaccggtccctgaggacgcgcttcacgacgcgggacgccacgttggccgcgtcggcggcgccgcccctgccgccgccgccgcagccgagcgcctggagcacctgcctccgcgtggcgccccgcgcgccgcccgcggcgagcgccagggagacgtggacggcgggggcggacacggccgcgttcccggtccccgcggcggcgaggacgcgccccgcgagcggaaggcagaaggcgcgctgcgccgcggccagcgcctccccccacggccgcgtcggcatcggcggaggggccgcctccgccggtgcttcgggcttcggcgcgggggccgaggagagccgccggtggttggcatcaccggcggggaagggtggacggcggagggctcgccggaggtagtaggagacctgcattttttttttctttct
More
|
||||||||||
| CDS seq | atgcaggtctcctactacctccggcgagccctccgccgtccacccttccccgccggtgatgccaaccaccggcggctctcctcggcccccgcgccgaagcccgaagcaccggcggaggcggcccctccgccgatgccgacgcggccgtggggggaggcgctggccgcggcgcagcgcgccttctgccttccgctcgcggggcgcgtcctcgccgccgcggggaccgggaacgcggccgtgtccgcccccgccgtccacgtctccctggcgctcgccgcgggcggcgcgcggggcgccacgcggaggcaggtgctccaggcgctcggctgcggcggcggcggcaggggcggcgccgccgacgcggccaacgtggcgtcccgcgtcgtgaagcgcgtcctcagggaccggtccacctccggcggcccgcggctggcgttcgcgggcggcgtctgggccgacgcatcgaggagtctctcgccggagttcgtgggactcgccggcaatgtgtacggctctgcggcgaagaaggccgacttcaagaacaagccggaagatgctcctgatcaaattaattcgtgggtcaaagattccacaaaaggtactgttacaacacttcttcctgctggaacaattgaccagaatacaggacttgttcttgggagtgcactgtactttaggggcagatggctggatagagatgatttgcggatgactactgaacaaaagttctactgcctggatggaacatctgtcgaagtcccatttgtggaatatgacagaacacgtctttttgccgtccatgataactttaaagttattaagcttccttacaagcaaggaaagaatgaaaggaagttttccatgtacattttcctccctgatgatcatgatggcttgtttgaattaacccagaagattttctctgaaccaatgttcttagaacaacatttaccaacagagaaatgccatgtgggtatctcggtgcccaactttaaaatatctttccagatcgatgtaaaggattttctgaaagatatggggcttgaactacctttcctccgggaagctgaattctctgatatgatcaaggaagatgactcaagtggtcctctgtttctgtctgatgtacttcataaatcggttttggaggttgatcaaaaaggaattgaagaaacttcagtatcaatgggcttgggcaagcctttgccagcacaacacttcaaggccgaccatccgttcttcttcatgattagggaggaggtctctggaacagtaatattcatggggcatgtgcttgacccttcatcacggacatag
More
|
||||||||||
| Protein seq | MQVSYYLRRALRRPPFPAGDANHRRLSSAPAPKPEAPAEAAPPPMPTRPWGEALAAAQRAFCLPLAGRVLAAAGTGNAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRMTTEQKFYCLDGTSVEVPFVEYDRTRLFAVHDNFKVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTEKCHVGISVPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGPLFLSDVLHKSVLEVDQKGIEETSVSMGLGKPLPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPSSRT |
||||||||||
| Function | Probable non-inhibitory serpin-Z9 [UniProtKB/Swiss-Prot:Q2R8P2] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0007540 | OsNaBo_11g0007540.01 | Chr11 | 6537952 | 6539919 | - | NAM | ||
| CDS seq | atgcaggtctcctactacctccggcgagccctccgccgtccacccttccccgccggtgatgccaaccaccggcggctctcctcggcccccgcgccgaagcccgaagcaccggcggaggcggcccctccgccgatgccgacgcggccgtggggggaggcgctggccgcggcgcagcgcgccttctgccttccgctcgcggggcgcgtcctcgccgccgcggggaccgggaacgcggccgtgtccgcccccgccgtccacgtctccctggcgctcgccgcgggcggcgcgcggggcgccacgcggaggcaggtgctccaggcgctcggctgcggcggcggcggcaggggcggcgccgccgacgcggccaacgtggcgtcccgcgtcgtgaagcgcgtcctcagggaccggtccacctccggcggcccgcggctggcgttcgcgggcggcgtctgggccgacgcatcgaggagtctctcgccggagttcgtgggactcgccggcaatgtgtacggctctgcggcgaagaaggccgacttcaagaacaagccggaagatgctcctgatcaaattaattcgtgggtcaaagattccacaaaaggtactgttacaacacttcttcctgctggaacaattgaccagaatacaggacttgttcttgggagtgcactgtactttaggggcagatggctggatagagatgatttgcggatgactactgaacaaaagttctactgcctggatggaacatctgtcgaagtcccatttgtggaatatgacagaacacgtctttttgccgtccatgataactttaaagttattaagcttccttacaagcaaggaaagaatgaaaggaagttttccatgtacattttcctccctgatgatcatgatggcttgtttgaattaacccagaagattttctctgaaccaatgttcttagaacaacatttaccaacagagaaatgccatgtgggtatctcggtgcccaactttaaaatatctttccagatcgatgtaaaggattttctgaaagatatggggcttgaactacctttcctccgggaagctgaattctctgatatgatcaaggaagatgactcaagtggtcctctgtttctgtctgatgtacttcataaatcggttttggaggttgatcaaaaaggaattgaagaaacttcagtatcaatgggcttgggcaagcctttgccagcacaacacttcaaggccgaccatccgttcttcttcatgattagggaggaggtctctggaacagtaatattcatggggcatgtgcttgacccttcatcacggacatag
More
|
|||||||
| Protein seq | MQVSYYLRRALRRPPFPAGDANHRRLSSAPAPKPEAPAEAAPPPMPTRPWGEALAAAQRAFCLPLAGRVLAAAGTGNAAVSAPAVHVSLALAAGGARGATRRQVLQALGCGGGGRGGAADAANVASRVVKRVLRDRSTSGGPRLAFAGGVWADASRSLSPEFVGLAGNVYGSAAKKADFKNKPEDAPDQINSWVKDSTKGTVTTLLPAGTIDQNTGLVLGSALYFRGRWLDRDDLRMTTEQKFYCLDGTSVEVPFVEYDRTRLFAVHDNFKVIKLPYKQGKNERKFSMYIFLPDDHDGLFELTQKIFSEPMFLEQHLPTEKCHVGISVPNFKISFQIDVKDFLKDMGLELPFLREAEFSDMIKEDDSSGPLFLSDVLHKSVLEVDQKGIEETSVSMGLGKPLPAQHFKADHPFFFMIREEVSGTVIFMGHVLDPSSRT
More
|
|||||||
| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.318104 | 0.0 | 2.101513 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0222200 | RBH | 0.482131 | 0.502762 | 0.000000 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g11500 | RBH | 0.325607 | 0.337697 | 0.000000 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0222200 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007680 | RBH | 0.0 | 1.694078 | 1.051054 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007780 | RBH | 0.0 | 0.0 | 0.568055 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0007580 | RBH | 0.0 | 1.490284 | 0.624299 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007560 | RBH | 0.0 | 0.000000 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007570 | RBH | 1.992707 | 4.338575 | 2.152456 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0102300 | RBH | 2.180042 | 5.700823 | 4.3943785 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007580 | RBH | 0.103597 | 0.216900 | 0.249990 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0108900 | RBH | 1.8894955 | 3.9208585 | 9.453041 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007730 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007570 | RBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007590 | RBH | 0.0 | 4.226406 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007670 | RBH | 0.000000 | 0.0 | 0.000000 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007700 | RBH | 0.0 | 5.349082 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007730 | RBH | 0.104732 | 1.658712 | 0.192770 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0007670 | SBH | 0.0 | 0.0 | 0.0 |
