Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0006850 | OGI:11017320 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:5516653-5521009 | ||||||||
| Gene Symbol | - | ||||||||||
| DNA seq | tcaaggatatgcaagcacatgaTGtgttgatgaagatgtatcttctgaggtagatAaattccaaatatcactgtttttcagtgactcccattcaccaggccctttgaaatgtaatgtgtacccAatggattgagctgccaatgcaacacCTttacacttCcttgcaatctccattccgatgggttccaattccgactgttctttgtcatctctgttcaCaaaatcgcttttgtgtttgattatatgccaacacattttgtctgtcaagccctctacattgtagggttcaatgtgttctgaaacattcttaccaatggcttcaccacgtgtggtaactatgacaatcaCcttggctaacttgaggagggcctgtagcttgagtttcaactggtctaattgaaaatcatttttctcccaaagatcatccaagacaataggaatattcAtattagttgttgccgtctccaaatcggtcatcacaggaatccTtttggagacttgtgAaaataTtgagttctcaattttttttaggtcgaacacctcagacacatagatccacaccaggaagtactctttaaattgttcatcactgacaattaactgtgctaaggttgtcttgccgattcctcccaagccatgtatcgcaaggattatgAaaccatgtgtcaagatcttgcttgataaatcagcaactatttTCttcttctcttcaatccttacgAcgatttctgcttcttCcaccactggtgatgttggcagccgaccaccaggaagtatttcctgtacatcggagctgaaattgaaCttgaaatctctgtgcagttttgtgatcttttctctagttgcactgtcatctccttcAacttattggccattttgatcttgggccgtactgtgAaacaacatgtgATggttgtacactgcaagttctatagtttCcgcgttagattgtaaagtagcgcaaaacagtacatatactttttttcaagtataaaaacatttcttgtactaattgaagaccaCcctagtagtcctcTtttgttaatcatcaaaagtaaataaacactaacgatccgatctatttaattaactggtattcaatgaatatattgatcggatctctttgactggtattatatggacgtcactaatgagagattttctgccgtacttggagtgagctaaatccgTtgatagcttctaatctaacaaTcCATaatgaatacgttgagtttcattcaaattagatattaTttttctatagccagtaagtgcaagtacaaatatagagaCcggtatggtctctacgttaattagaggctatcacgttacaatagttaagccAgtacagtctctaaCcattaatgtctctaaccattaatgtaccAaaatactttcTtactagtcAtctttcctttattagActcaatgcaacAAaaaaaatttcctAataaatgctaagagtcgactctacaCcgttgtcatgcgtagcaaccatctttctctttCcttctttttctctcttccacgtcaccaaaTatgcttgcacgacaataaagagagatcgctaataaagaccattgtacatgctctaatgtaacgaagcaagaaaaTaattaaacaagcgtacacgcgcaaccgttgcacgacaaaagtctggctacaaCctagggctggcgattgtcAaggcgacataTgtttatctagactcgttcctAAaagataatTAattttgggacgaaagaagcccatGttttggaaccagcatCccctaattaaagatgtgctaataagccatgatagttaatgccAgttctaaaatgggcacaagcacatacgtaCtcactccgtccaacacaactcaaccaacttctaccatcctaaCtacccttagcacataaaatgaaaagttttcTTTttatctatctatcactcttactattttttccaataattaagagcattctagttattttcactctccactatttccaccttaggatgctaggaatagaTtttttttttatggagggagtatcttcgtaaatgctggtagttctaaacataaagccgtcctcctaTttaactgttttttattattagtgagaaccgacacataatggtatatgtatattccagttcttaataacttttcactcatgtgaggctcagaataggaggaaaatgcctgatatatactgggtgtacatatttggtgtcttgtaccactaatgcacttccattagcaattttaataatttctatctaatatcatataatattataatcactactgcagaaCaccccatatagaccggaccaaccttatAagtgccaatttgcttaaaaccagtacctgtaacaacttcttggtatcggtttataacaaaaaccgacaccaacaattataggtgccagttcttataacaaactggtacctatggacatcacataagtattggttcttataataatctggtacctataagtgtgacttAtagtagcatagttTCctctttttttaatgaaccggcacatataatgacctaactcatatatgtgtgTtttattattaacTttttcatataaaaTtggatgaaggtaaactTtAtatatatattatataTATATatagtatatatattatatatatatatatatattatataTaatatattagtagaactcgacgagatctacaactaactttgtagttgatgacttttcgatttaaggtcgttcggtggttcaaaaatatgttgcaaggtctcgaatctatttgcatgagtggatatttaaaatttctatacgatatcagatggagacaaaacctatatAaaagttatagatattgaagatatctacatttttgtagttgacAaactttttatttgagcttatctatggtattaaatatggattataagttcggatgattgtggtctcaaaacaatagtatttgtttcccagacaaaaagtgttttgtagatgagatggtaagttgacttcgTgtgaagtgagaggtcttgagttcaaaTtttgcttgacacatgtatatgaatatgggttgaaaaaaatcatgtgacttgtgcgaatgattgtgtgatagtatacaaccggcacttatgtagcagtgaacacagttcaatatactcaaagggtggtcacacatgtggtcaaacgtaagcagtccataTaataatccgttgctccCaAGcccggcgccgctagatctgtcctcgtgtggtttgCtgcCatcatcatcttcgccctagctgccattgtcatcaccctagccgctgccgttgtcgacatcgtcgcCgGcgaggcccaacCactcccgtggccggcagaggaggattggcccctcTGggggccaggggctcatcaccctagccgctgccgttgtcgacatCgtcgccggcgaggcccaaccactcccgtggccggcagaggaggattggcccCTctgggggccaggggcagcggatttggctagtccgagaccACcgtcaacgttgtggtCACCaccgccactcctgccgtggccgcccgttgccacttgaggctgtgggagagagtggagggtgggggtgatgaggagggcaagtGggaaagtgagagggagaaaggagggtgagagagaggagagaaaagcaacagaggaagtgggagagagagagagagagcacaaagaaattAaaagggggaggcgagaagtctaggatagaaaaaatatgagtggaggggtagctaTtacacgaagcagacaagagaaatagaaatgctcgcctgtgaaaaagctagaagcccacatgcgaatatccaTttttactgatggacctcaactgaacagcAtccaaataTtttttttCatacatgtgttcttttagcccacaggcgatAaaatagcagtgcttttgtgttttggctgtcaaggaaatcaTttttctaagtagtgaatcatgaagtgtgtgtaaaTtaaaaacaatAaatcttgTttggcagcataaaaatcataaaactgaattattagtatcttggaaggaagacagcacaaaacctttgctgcagcttgtttggtgaagaggtcggcttcaaactcatcgaacatatcagagatgtcatatgcagcgaacttgaggcgcttcagcCacagccgcaccgccTtgctcttgatggaccgcgcctcggcGtcctcgagcaaagccatcacgaactccaacgccatctcCatgTcctctaggtcgtcctttaagtgCcactgcAtcatgacccgatcaacaatggcggaaccaatcTtgtcaccaatcatcttgacgacggcagcactaagcatgccaccgagTtccgccat
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| CDS seq | atggcggaActcggtggcatgcttagtgctgccgtcgtcaagatgattggtgacaAgattggttccgccattgttgatcgggtcatgaTgcagtgGcacttaaaggacgacctagaggAcatGgagatggcgttggagttcgtgatggctttgctcgaggaCgccgaggcgcggtccatcaagagcaAggcggtgcggctgtGgctgaagcgcctcaagttcgctgcatatgacatctctgatatgttcgatgagtttgaagccgacctcttcaccaaacaagctgcagcaaaggaaatacttcctggtggtcggctgccaacatcaccagtggtgGaagaagcagaaatcgTcgtaaggattgaagagaagaaGAaaatagttgctgatttatcaagcaagatcttgacacatggttTcataatccttgcgatacatggcttgggaggaatcggcaagacaaccttagcacagttaattgtcagtgatgaacaatttaaagagtacttcctggtgtggatctatgtgtctgaggtgttcgacctaaaaaaaattgagaactcaAtatttTcacaagtctccaaaAggattcctgtgatgaccgatttggagacggcaacaactaataTgaatattcctattgtcttggatgatctttgggagaaaaatgattttcaattagaccagttgaaactcaagctacaggccctcctcaagttagccaagGtgattgtcatagttaccacacgtggtgaagccattggtaagaatgtttcagaacacattgaaccctacaatgtagagggcttgacagacaaaatgtgttggcatataatcaaacacaaaagcgattttGtgaacagagatgacaaagaacagtcggaattggaacccatcggaatggagattgcaagGaagtgtaaAGgtgttgcattggcagctcaatccatTgggtacacattacatttcaaagggcctggtgaatgggagtcactgaaaaacagtgatatttggaattTatctacctcagaagatacatcttcatcaacaCAtcatgtgcttgcatatccttga
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| Protein seq | MAELGGMLSAAVVKMIGDKIGSAIVDRVMMQWHLKDDLEDMEMALEFVMALLEDAEARSIKSKAVRLWLKRLKFAAYDISDMFDEFEADLFTKQAAAKEILPGGRLPTSPVVEEAEIVVRIEEKKKIVADLSSKILTHGFIILAIHGLGGIGKTTLAQLIVSDEQFKEYFLVWIYVSEVFDLKKIENSIFSQVSKRIPVMTDLETATTNMNIPIVLDDLWEKNDFQLDQLKLKLQALLKLAKVIVIVTTRGEAIGKNVSEHIEPYNVEGLTDKMCWHIIKHKSDFVNRDDKEQSELEPIGMEIARKCKGVALAAQSIGYTLHFKGPGEWESLKNSDIWNLSTSEDTSSSTHHVLAYP |
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| Function | Putative disease resistance protein RGA3 [UniProtKB/Swiss-Prot:Q7XA40] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0006850 | OsNaBo_11g0006850.01 | Chr11 | 5516653 | 5521009 | - | NAM | ||
| CDS seq | atggcggaActcggtggcatgcttagtgctgccgtcgtcaagatgattggtgacaAgattggttccgccattgttgatcgggtcatgaTgcagtgGcacttaaaggacgacctagaggAcatGgagatggcgttggagttcgtgatggctttgctcgaggaCgccgaggcgcggtccatcaagagcaAggcggtgcggctgtGgctgaagcgcctcaagttcgctgcatatgacatctctgatatgttcgatgagtttgaagccgacctcttcaccaaacaagctgcagcaaaggaaatacttcctggtggtcggctgccaacatcaccagtggtgGaagaagcagaaatcgTcgtaaggattgaagagaagaaGAaaatagttgctgatttatcaagcaagatcttgacacatggttTcataatccttgcgatacatggcttgggaggaatcggcaagacaaccttagcacagttaattgtcagtgatgaacaatttaaagagtacttcctggtgtggatctatgtgtctgaggtgttcgacctaaaaaaaattgagaactcaAtatttTcacaagtctccaaaAggattcctgtgatgaccgatttggagacggcaacaactaataTgaatattcctattgtcttggatgatctttgggagaaaaatgattttcaattagaccagttgaaactcaagctacaggccctcctcaagttagccaagGtgattgtcatagttaccacacgtggtgaagccattggtaagaatgtttcagaacacattgaaccctacaatgtagagggcttgacagacaaaatgtgttggcatataatcaaacacaaaagcgattttGtgaacagagatgacaaagaacagtcggaattggaacccatcggaatggagattgcaagGaagtgtaaAGgtgttgcattggcagctcaatccatTgggtacacattacatttcaaagggcctggtgaatgggagtcactgaaaaacagtgatatttggaattTatctacctcagaagatacatcttcatcaacaCAtcatgtgcttgcatatccttga
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| Protein seq | MAELGGMLSAAVVKMIGDKIGSAIVDRVMMQWHLKDDLEDMEMALEFVMALLEDAEARSIKSKAVRLWLKRLKFAAYDISDMFDEFEADLFTKQAAAKEILPGGRLPTSPVVEEAEIVVRIEEKKKIVADLSSKILTHGFIILAIHGLGGIGKTTLAQLIVSDEQFKEYFLVWIYVSEVFDLKKIENSIFSQVSKRIPVMTDLETATTNMNIPIVLDDLWEKNDFQLDQLKLKLQALLKLAKVIVIVTTRGEAIGKNVSEHIEPYNVEGLTDKMCWHIIKHKSDFVNRDDKEQSELEPIGMEIARKCKGVALAAQSIGYTLHFKGPGEWESLKNSDIWNLSTSEDTSSSTHHVLAYP
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
Expression
| Leaf | Root | Panicle | |
| FPKM | 0.0 | 0.0 | 0.0 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0212100 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g10620 | RBH | 0.0 | 0.0 | 0.0 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0212100 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0007100 | SBH | 0.0 | 0.0 | 0.0 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0007150 | RBH | 0.0 | 0.0 | 0.0 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0006990 | SBH | 0.0 | 0.0 | 0.0 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0007010 | SBH | 0.0 | 0.0 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0007010 | SBH | 0.418211 | 10.183719 | 9.367559 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0092700 | SBH | 0.535219 | 12.828787 | 12.050672 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0007000 | SBH | 0.0 | 0.749402 | 0.515046 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0093400 | RBH | 0 | 0 | 0 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0007020 | RBH | 0.0 | 0.0 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0007020 | SBH | 0.0 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0007000 | SBH | 12.632676 | 0.0 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0007080 | RBH | 0.0 | 0.0 | 0.0 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0007120 | SBH | 0.0 | 7.534485 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G007030 | RBH | 0.0 | 0.0 | 0.0 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_11g0006960 | RBH | 8.103274 | 3.715226 | 0.147946 |
