Basic Info |
| Gene ID | OGI # | Score | Accession | Assembly | Annotation | Location | Links | |||||||
| OsNaBo_11g0005340 | OGI:11013290 | 16/16 | NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | Chr11:4186903-4194953 | ||||||||
| Gene Symbol | SWI3C, OsSWI3C, OsCHB705, CHB705, OsSWI3C1, SWI3C1 | ||||||||||
| DNA seq | aaagagttcattcagtacactgattcactcactcccgaGtcccgacctCcctcgcacgtgcttccctgcgtcgaCcccgtcccgacccgtccccctcactcgccgccgccgccgccgccgccgacgccgacgccgaggacgacgacgacgatgccgcggaaggcctcgtcgacctcaggtacgcacctccaaccctcgccgaactccaattCccctaagcaagcgctaattccccgaaccctaactcccagattcgcgcctgaaatggcggaagtggaagcGgaaccccaccgcgtccccgtcgccgtccaaccgctcgtcggccgccgccgccgcggcggaccactccgacgactccgactccgccgccgttaacgaGgacgacgactccgcggtccccgaggacgccgacgacgaaaccctagccggggcggaggaccccgtgctcgacctccgcgaggcggaggtgctcccttcggcggagcccgtctcggcgttccccgtcgccacccgacgcgtcgtcaaccggccgcacccgtccgtCctcgccgtcatcgcggccgagcgatccgcgtgcgcgggtgaGggttccgccgcggtggcggcggcgccggtgctggagaacatctcgtacgggcagcagcaggtgctctccGGggtgctccctgacCAcgcttcgctcgcgacggacactgacaagccgtctacctatgtgtgcacgccgccgaatcttatggaGgggcatggcgtgaccaagcagttccaGggtcgcctacatgtcgtgcccaagcactcaggtccgcctgctctttgcaaccaaaaacctgaatgtctgagctataatgcggcactaacttgtttgcgatttgtagattggttctccccagggatcgtgcacaggctggaaaggcaggtggtgccacagttcttttcagggaagtcgccgggcaacactccAcagaagtacatgctattgaggaataaggttattgcaaaataTttagagaacccaagcaagaggcttgcttttgcagagtgcCAagggcttgttgcgaacacagctgaattatatgatctcagtaggattgttaggttcttagacacttggggaatcatcaattaccttgcgtctGggtcggtgcaccGgggtctaaggatggcaacctcccttctaaGggaggagccaaccggggagttgcaactattgactgcgccactgaaatcaattgatggcctaattttgtttgatcgaccgaaatgtaacctccaagcagaggacatttcttcattggcatcaaattcGgaggttgtggattttgatgctggacttgcagaattggatggaaagattagggagcgattgtcagagagttcttgcagttattgcttacagcctttgaccagcttgcactatcagtcactaaaggagGtgagcatctttgtaattttcgtttagatgttctctccccatttttcatgtgcaggaaacccttctatatcttagtgttgttgcttacattttGtttgacacctaaaagatgaatAatacAaaaactgggaaacgatatcacagtAagctgagcagtagtctagcaaGttatgacacacgcttttgctgagaaTtgacatactagattctgttgttgaaatttaatatctgtctgtctgtgtttgccaacccaatgaatacttgctctgtgttttgcatcataatcctgctcctcactgctctgtgtttgccaacccaacgaatactctacatatgttgcgtcatgctctgttctgctaaaacatggaaactgcatttttaatttGAgaaaagaaaaacatttagaacacagaatcttacactcttactagtcagcctaagcaatttatggtctttccatacaagtgatcaacccaaacattatattgtgctgaaagcttctgaacagaattggTtattAaatgatcagtgttcctgcatagaaaaaaatcacaatacaagatacagtcaacaacaatattaacttaaagaattaatagAaagtttatatggttgttcatgccacttttcagtgagtgATaaGagtaatgtggcaattgattggatggcaggccgtagtgatactgtgaactgtcataagaaaaaaccctgcaaaatttagttgaaataAGaagacacatacaatctgtagtattcTtttgaattaaaatacatataatttgtagtatcaaactgtattgaagtgagatgattcatgtaaacttgacaaatattgaattatttattggaaGtacaacAtaaagggcaacataaagatcctaagatgcctatacaATaacatgttagaatgcagctgggatagggataaaaGttactaccaagagatttgggatgtacatctggacaagagcatttaggtggatgtttactgcagccacctccctgctgctggtcaatGggtgcctAgaatgtacggattGgagaaggatgcacacctgtgcaccatgcttatacttaccagctccttggttgccgtgcGgtttactgctgcaaggaggccaacAatcaaattcaaaattaaggagagcagaaatgatgcagatgaaacaataatgttagacactcaaaatgtgttggataagaagggccacaaagcgtgcatccatgacagctactgtcctccattgaagtatcccttgatgcagcctgccaccacaaactccataacagctttgaaagttctgcttGgaattttcaGggtgaagatagcaaaTaagacaactgctccttcatatAttagtagatattattgatggtatcatataTttgtggtgtagcAatgactagaaccctgtttgtagctgaacttaactttaagttatgggataGgtgagtttcacactttcacttcaaattgcagtttgtgctattttgtcaactatgcataaattgattacagtagtactctattttctttgttgaaggaagataaactggtaggtctattttgcctgtgcaatattaatgcatcatgctggttcccactcttttcTttgtgggggatgagaagcaaacAatgacaatcttcttgttgGttgagcaggcagatatcgctctatgctctgattgcttccatgatgcgagatatattactgggcattcaagcttagattttcagaggattgatGgggataacgatagatcagAaaatgatggggatagttggactgatcaagaaacgttAttgctgttggaGggcatagagaagtacaatgacAactggaataacattgcagagcatgttggaacaaagtcaaaagcacaatgtatttaccattttattcgtcttcctgttgaagatggtttgttagaGaAtattgaggtgccagatgcatctgtgccatttagagcagaaaccaatggatacccacatttagattgcaatggcagtacttcaGgtatttttacatatttacactgatagttcctctgttatcagttctcgaaatttgttttctcacaaattttagattataataactagcatttttaacattgattaccatgTttttccataggaaatctacctcAaaaaattccacctgataaccagcttccgttcaTtaattcttctaatccggtgatgtcactggtaagcagttgttcactaaacctgtttagagaatgagtggacaatttttcggTtttcaacagtgagttgtgtcAtttagatttggatgacaagaatgcatggtactccctccgtttcatattataagtcgttttgactttagtcaaagtcaaactactttaagTttgactaagtttgtagattgatatagtataacatttacaacaccaaattagttttaTtaaatttataattgaatatattttcataatatatttgtgttgggttgaaaatatcactaTttttttctataaacttggtcaaacttgaagcagtttgactttgaccaaagtcaagacgacttataaatctgaaacgcagggagtactaTTttttatgttagctcatagaatttgtgtttatctcccttctaatcctcagactgatctgaggttcatttcaaccttagtgccttccAatttttgtgcctgctccagacttagcattcctttacaaaatgtatgctggcacatatacagcgagccactgaatgcttaagtttgagtaaagtgcatGggtgatccttAaacttgtaggggtgtgtcatttaagtccctAaactctaaaactacatatccAagtcccaaaacttgtcatagtgtatcatctaggttccaaatcgccatggtccttaaggatcctacgtggcgctgatgtggcatgccacacagacatgacgtgatatcattttgattgacaaatgggatccatttaaaaattttcctttttcttgttctcctattttttccTttcttctcctttctctgtgacccgagcagaagaaAGgAaaaaaaaatgaatgagaagaaaacaaaaaagaaaaagaaaagaagaaaaaagagaGgaaaaggacacatcatgttcatgtggtatgccacatcagcgccacgtaggaTtctagaggggctgtgTtgaattgggacctagatgatacactttgacgagttttgggacctggatctacattttgagagtttggagatctagatgacacaaccctacaagtttaaggaccgcctatgcactttactctttaagttttatagagatctatacttataacttgattggcgcaggccacaagttctgaagtgaattcttattagttcaaatgcttcctcttgttctgcctgccttGgtgttattaatcaagatggttttgtccgtcatattatctcAagtgtatgtgttatcttccttgctgaaTttgacctgactatgacactgtttctagtatagagtgcttagtaacacgagaaataacatcagtattatcctgaattacttttcatattgttccctgattaattttaatttgaaattattgcaatcacacAaatcctgtgcttcactgcttcaacgtAaactagttctcatgatgtttgaaccaaacatatataggcttcttagccttctgtatatgTCtggcattgtgtgtcttactgtttggagatactgtgcaggttgggtttttggcttctgctatgggaccaagagttgcagcatcatgtgcaagtgctgctttatcagttttgacagtagatgatgattccaggttagccatcttccctgaaatgttttattttagtagcatgattAaatcatttaacacttcagtcaggattttagaaaaaggttacatAaattgaatactagatcttatctggtacaactacaagctaccagcaataaccatctttgagttctgtttgagtttattttatcaaacagcatatgagtactagataaatgaataagattagtccagaaatatcgcaccaatacttgtagctacagtactactgatacggctacccagatagtaaccaGgtggttactactgatctttatccctcattgagattgcggaacttatccacctgatgttaaaattggacctttggtttgtttcatttggtcgttaggttggtttgcagtctcctttggacttattatggtagatgtaggttttgacttaccttttgctgaacactgaagggtgaattcagaaggcatttgctctgattctaggggccaaggtccgcatccgaattttcgtgatcataatggtggtaatgacttcatatttattctccactatgataatcaGttttctgcgcaatctcatgtactcatgcaagatattagtgttaAGgAaaccatcctatccttaaataggtgtatcttcatCcatctctccagaaaaggtgaagcatgctgccatgtgtggtttgtcggcagcagctacgaaggctaaactttttgcagatcaagaggaacgtgaaatccaaagactaactgctactgtaataaaccatcaGgttagtgtgaacgttgccatcttgtttacatttgggccttgtttttctcattattgctgtcaccagggtgtgaaaaaccgccggtaaccgcgcggttaccgcggttaccgcccgtaccgcgggggtacggttacccgtaccgcgcggtacggtttaataaaattcgtccaaattcaaaaatttAAaaaaaaaaaagaaaaaaaatcAaaaaaaatagtgaaggtagtgcttgatttatagtgttttatggtgaagaaatttctcaaaaaagagtaataTttattcaaatttgagagcaaaacggagaataaatttgaaaattggaaaaagAaaaaaaatgggccggcccgttactgtgcaacccattacacatcgcgcggtaaccgcgccaaaccgcgtggttaccgcgtcaaaccgcgcggtaaccgcgccaaaccgcgcggtttgcccgaatttttgaattcaaAtttcgatttgtaaatttgtcgcggttttgcgcggttaccgcggttaccgccggtaaccgccgtaccgccgggtggcggtaaccgggcccccggcggtttttgaaaccctggctgtcacatctgagggtgtgttcgccgttgcacggAAaacggagcagtccattagcgcgtgattaattaagtattagctattttttttcAaaaatggattaatttgatttttttaagcaactttcgtatagaaactttttgcaaaaaacacaccgtttagcagtttgaaaagcgtgcgcgtggAaaacgagggagagtggttggggAaaagggcatccgaacactgcctgaatgtctgagtgtgcaaactcctacttaagaaaaatgcactattgcatagccccactttatggcttattttgtacttggtcccttaaaatatgagttctagaaagagtttgaaaatggcagtgtaaagttggtgtctgtgtacacgatttcctttcctagtctaatttgatggtgaaaggtgtttctcatacattctgattaggttttggaaacttatataactcaattgcctataataccaggtaggcatgtctccaatgatagtgttgtggtgaatgataagtatagctggtgaggactgagtctataactggctgaactaattgtgtcgtcagtcttatgtataattgccagtaagtaggatcaataaaattcaaaactgtaattcatctaggaagcaagttaggaaactgtaattgatctatgtttgatctgccgttggtcatagtcactagctttttttaccaagttgcAttgtcgtcattgataatatttgtttgcaacaacaattaacttgcagttAaaaaggttggaactgaagctgaagcagtttgccgaagtcgagaccttgcttttgaaagaatgcgagcaagtggagagaataaggcagaggattgcatctgaccgtgtccgaatcgtgtccacccgcttggcctcgcctggAaatagcctacctgggggtagtactagcaccatgtcatccaatccaatgagTatgagccccagaccgatGggcgtgccaggctcgatgcctcaatccagtatgccagcaccatttgccaataacatgcaggggcatggtcacccccagatggcattcttacaacagcagcagcggcagcagatgctgtcatttggacctcgtctgccgctgtcggccatccAaacccagccatccccacagacgtcaaacatcatgttcaacccaggcatgcccaattctgtaacccctaatcatcatcaactgttgaggtcgtcttctggaaacaattcaagtgtaggataggagaaagaaaaaagggagattcataagattccaaccagtgtagcttcctcagttgtagctttatatgattcataaacatctcattgttattcatttgtacaatatgttccattggtcgtataatttatgatcacttaggttctcaTtttatgtatttatgatcacttgggttctcattttatagcctcaaaagtgttgttacggatgtctcacgatatatcgtttgaatctggtg
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| CDS seq | atgccgcggaaggcctcgtcgacctcagattcgcgcctgaaatggcggaagtggaagcGgaaccccaccgcgtccccgtcgccgtccaaccgctcgtcggccgccgccgccgcggcggaccactccgacgactccgactccgccgccgttaacgaGgacgacgactccgcggtccccgaggacgccgacgacgaaaccctagccggggcggaggaccccgtgctcgacctccgcgaggcggaggtgctcccttcggcggagcccgtctcggcgttccccgtcgccacccgacgcgtcgtcaaccggccgcacccgtccgtCctcgccgtcatcgcggccgagcgatccgcgtgcgcgggtgaGggttccgccgcggtggcggcggcgccggtgctggagaacatctcgtacgggcagcagcaggtgctctccGGggtgctccctgacCAcgcttcgctcgcgacggacactgacaagccgtctacctatgtgtgcacgccgccgaatcttatggaGgggcatggcgtgaccaagcagttccaGggtcgcctacatgtcgtgcccaagcactcagattggttctccccagggatcgtgcacaggctggaaaggcaggtggtgccacagttcttttcagggaagtcgccgggcaacactccAcagaagtacatgctattgaggaataaggttattgcaaaataTttagagaacccaagcaagaggcttgcttttgcagagtgcCAagggcttgttgcgaacacagctgaattatatgatctcagtaggattgttaggttcttagacacttggggaatcatcaattaccttgcgtctGggtcggtgcaccGgggtctaaggatggcaacctcccttctaaGggaggagccaaccggggagttgcaactattgactgcgccactgaaatcaattgatggcctaattttgtttgatcgaccgaaatgtaacctccaagcagaggacatttcttcattggcatcaaattcGgaggttgtggattttgatgctggacttgcagaattggatggaaagattagggagcgattgtcagagagttcttgcagttattgcttacagcctttgaccagcttgcactatcagtcactaaaggaggcagatatcgctctatgctctgattgcttccatgatgcgagatatattactgggcattcaagcttagattttcagaggattgatGgggataacgatagatcagAaaatgatggggatagttggactgatcaagaaacgttAttgctgttggaGggcatagagaagtacaatgacAactggaataacattgcagagcatgttggaacaaagtcaaaagcacaatgtatttaccattttattcgtcttcctgttgaagatggtttgttagaGaAtattgaggtgccagatgcatctgtgccatttagagcagaaaccaatggatacccacatttagattgcaatggcagtacttcaGgaaatctacctcAaaaaattccacctgataaccagcttccgttcaTtaattcttctaatccggtgatgtcactggttgggtttttggcttctgctatgggaccaagagttgcagcatcatgtgcaagtgctgctttatcagttttgacagtagatgatgattccagggtgaattcagaaggcatttgctctgattctaggggccaaggtccgcatccgaattttcgtgatcataatggtggtgtatcttcatCcatctctccagaaaaggtgaagcatgctgccatgtgtggtttgtcggcagcagctacgaaggctaaactttttgcagatcaagaggaacgtgaaatccaaagactaactgctactgtaataaaccatcaGttAaaaaggttggaactgaagctgaagcagtttgccgaagtcgagaccttgcttttgaaagaatgcgagcaagtggagagaataaggcagaggattgcatctgaccgtgtccgaatcgtgtccacccgcttggcctcgcctggAaatagcctacctgggggtagtactagcaccatgtcatccaatccaatgagTatgagccccagaccgatGggcgtgccaggctcgatgcctcaatccagtatgccagcaccatttgccaataacatgcaggggcatggtcacccccagatggcattcttacaacagcagcagcggcagcagatgctgtcatttggacctcgtctgccgctgtcggccatccAaacccagccatccccacagacgtcaaacatcatgttcaacccaggcatgcccaattctgtaacccctaatcatcatcaactgttgaggtcgtcttctggaaacaattcaagtgtaggatag
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| Protein seq | MPRKASSTSDSRLKWRKWKRNPTASPSPSNRSSAAAAAADHSDDSDSAAVNEDDDSAVPEDADDETLAGAEDPVLDLREAEVLPSAEPVSAFPVATRRVVNRPHPSVLAVIAAERSACAGEGSAAVAAAPVLENISYGQQQVLSGVLPDHASLATDTDKPSTYVCTPPNLMEGHGVTKQFQGRLHVVPKHSDWFSPGIVHRLERQVVPQFFSGKSPGNTPQKYMLLRNKVIAKYLENPSKRLAFAECQGLVANTAELYDLSRIVRFLDTWGIINYLASGSVHRGLRMATSLLREEPTGELQLLTAPLKSIDGLILFDRPKCNLQAEDISSLASNSEVVDFDAGLAELDGKIRERLSESSCSYCLQPLTSLHYQSLKEADIALCSDCFHDARYITGHSSLDFQRIDGDNDRSENDGDSWTDQETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENIEVPDASVPFRAETNGYPHLDCNGSTSGNLPQKIPPDNQLPFINSSNPVMSLVGFLASAMGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDRVRIVSTRLASPGNSLPGGSTSTMSSNPMSMSPRPMGVPGSMPQSSMPAPFANNMQGHGHPQMAFLQQQQRQQMLSFGPRLPLSAIQTQPSPQTSNIMFNPGMPNSVTPNHHQLLRSSSGNNSSVG |
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| Function | SWI/SNF complex subunit SWI3C [UniProtKB/Swiss-Prot:Q9XI07] | ||||||||||
Transcripts
| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0005340 | OsNaBo_11g0005340.02 | Chr11 | 4186906 | 4194953 | + | NAM | ||
| CDS seq | atgccgcggaaggcctcgtcgacctcagattcgcgcctgaaatggcggaagtggaagcGgaaccccaccgcgtccccgtcgccgtccaaccgctcgtcggccgccgccgccgcggcggaccactccgacgactccgactccgccgccgttaacgaGgacgacgactccgcggtccccgaggacgccgacgacgaaaccctagccggggcggaggaccccgtgctcgacctccgcgaggcggaggtgctcccttcggcggagcccgtctcggcgttccccgtcgccacccgacgcgtcgtcaaccggccgcacccgtccgtCctcgccgtcatcgcggccgagcgatccgcgtgcgcgggtgaGggttccgccgcggtggcggcggcgccggtgctggagaacatctcgtacgggcagcagcaggtgctctccGGggtgctccctgacCAcgcttcgctcgcgacggacactgacaagccgtctacctatgtgtgcacgccgccgaatcttatggaGgggcatggcgtgaccaagcagttccaGggtcgcctacatgtcgtgcccaagcactcagattggttctccccagggatcgtgcacaggctggaaaggcaggtggtgccacagttcttttcagggaagtcgccgggcaacactccAcagaagtacatgctattgaggaataaggttattgcaaaataTttagagaacccaagcaagaggcttgcttttgcagagtgcCAagggcttgttgcgaacacagctgaattatatgatctcagtaggattgttaggttcttagacacttggggaatcatcaattaccttgcgtctGggtcggtgcaccGgggtctaaggatggcaacctcccttctaaGggaggagccaaccggggagttgcaactattgactgcgccactgaaatcaattgatggcctaattttgtttgatcgaccgaaatgtaacctccaagcagaggacatttcttcattggcatcaaattcGgaggttgtggattttgatgctggacttgcagaattggatggaaagattagggagcgattgtcagagagttcttgcagttattgcttacagcctttgaccagcttgcactatcagtcactaaaggaggcagatatcgctctatgctctgattgcttccatgatgcgagatatattactgggcattcaagcttagattttcagaggattgatGgggataacgatagatcagAaaatgatggggatagttggactgatcaagaaacgttAttgctgttggaGggcatagagaagtacaatgacAactggaataacattgcagagcatgttggaacaaagtcaaaagcacaatgtatttaccattttattcgtcttcctgttgaagatggtttgttagaGaAtattgaggtgccagatgcatctgtgccatttagagcagaaaccaatggatacccacatttagattgcaatggcagtacttcaGgaaatctacctcAaaaaattccacctgataaccagcttccgttcaTtaattcttctaatccggtgatgtcactggttgggtttttggcttctgctatgggaccaagagttgcagcatcatgtgcaagtgctgctttatcagttttgacagtagatgatgattccagggtgaattcagaaggcatttgctctgattctaggggccaaggtccgcatccgaattttcgtgatcataatggtgaaaaggtgaagcatgctgccatgtgtggtttgtcggcagcagctacgaaggctaaactttttgcagatcaagaggaacgtgaaatccaaagactaactgctactgtaataaaccatcaGttAaaaaggttggaactgaagctgaagcagtttgccgaagtcgagaccttgcttttgaaagaatgcgagcaagtggagagaataaggcagaggattgcatctgaccgtgtccgaatcgtgtccacccgcttggcctcgcctggAaatagcctacctgggggtagtactagcaccatgtcatccaatccaatgagTatgagccccagaccgatGggcgtgccaggctcgatgcctcaatccagtatgccagcaccatttgccaataacatgcaggggcatggtcacccccagatggcattcttacaacagcagcagcggcagcagatgctgtcatttggacctcgtctgccgctgtcggccatccAaacccagccatccccacagacgtcaaacatcatgttcaacccaggcatgcccaattctgtaacccctaatcatcatcaactgttgaggtcgtcttctggaaacaattcaagtgtaggatag
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| Protein seq | MPRKASSTSDSRLKWRKWKRNPTASPSPSNRSSAAAAAADHSDDSDSAAVNEDDDSAVPEDADDETLAGAEDPVLDLREAEVLPSAEPVSAFPVATRRVVNRPHPSVLAVIAAERSACAGEGSAAVAAAPVLENISYGQQQVLSGVLPDHASLATDTDKPSTYVCTPPNLMEGHGVTKQFQGRLHVVPKHSDWFSPGIVHRLERQVVPQFFSGKSPGNTPQKYMLLRNKVIAKYLENPSKRLAFAECQGLVANTAELYDLSRIVRFLDTWGIINYLASGSVHRGLRMATSLLREEPTGELQLLTAPLKSIDGLILFDRPKCNLQAEDISSLASNSEVVDFDAGLAELDGKIRERLSESSCSYCLQPLTSLHYQSLKEADIALCSDCFHDARYITGHSSLDFQRIDGDNDRSENDGDSWTDQETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENIEVPDASVPFRAETNGYPHLDCNGSTSGNLPQKIPPDNQLPFINSSNPVMSLVGFLASAMGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGEKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDRVRIVSTRLASPGNSLPGGSTSTMSSNPMSMSPRPMGVPGSMPQSSMPAPFANNMQGHGHPQMAFLQQQQRQQMLSFGPRLPLSAIQTQPSPQTSNIMFNPGMPNSVTPNHHQLLRSSSGNNSSVG
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| Gene | Transcript | Chromosome | Start | End | Strand | Source | ||
| OsNaBo_11g0005340 | OsNaBo_11g0005340.01 | Chr11 | 4186903 | 4194953 | + | NAM | ||
| CDS seq | atgccgcggaaggcctcgtcgacctcagattcgcgcctgaaatggcggaagtggaagcGgaaccccaccgcgtccccgtcgccgtccaaccgctcgtcggccgccgccgccgcggcggaccactccgacgactccgactccgccgccgttaacgaGgacgacgactccgcggtccccgaggacgccgacgacgaaaccctagccggggcggaggaccccgtgctcgacctccgcgaggcggaggtgctcccttcggcggagcccgtctcggcgttccccgtcgccacccgacgcgtcgtcaaccggccgcacccgtccgtCctcgccgtcatcgcggccgagcgatccgcgtgcgcgggtgaGggttccgccgcggtggcggcggcgccggtgctggagaacatctcgtacgggcagcagcaggtgctctccGGggtgctccctgacCAcgcttcgctcgcgacggacactgacaagccgtctacctatgtgtgcacgccgccgaatcttatggaGgggcatggcgtgaccaagcagttccaGggtcgcctacatgtcgtgcccaagcactcagattggttctccccagggatcgtgcacaggctggaaaggcaggtggtgccacagttcttttcagggaagtcgccgggcaacactccAcagaagtacatgctattgaggaataaggttattgcaaaataTttagagaacccaagcaagaggcttgcttttgcagagtgcCAagggcttgttgcgaacacagctgaattatatgatctcagtaggattgttaggttcttagacacttggggaatcatcaattaccttgcgtctGggtcggtgcaccGgggtctaaggatggcaacctcccttctaaGggaggagccaaccggggagttgcaactattgactgcgccactgaaatcaattgatggcctaattttgtttgatcgaccgaaatgtaacctccaagcagaggacatttcttcattggcatcaaattcGgaggttgtggattttgatgctggacttgcagaattggatggaaagattagggagcgattgtcagagagttcttgcagttattgcttacagcctttgaccagcttgcactatcagtcactaaaggaggcagatatcgctctatgctctgattgcttccatgatgcgagatatattactgggcattcaagcttagattttcagaggattgatGgggataacgatagatcagAaaatgatggggatagttggactgatcaagaaacgttAttgctgttggaGggcatagagaagtacaatgacAactggaataacattgcagagcatgttggaacaaagtcaaaagcacaatgtatttaccattttattcgtcttcctgttgaagatggtttgttagaGaAtattgaggtgccagatgcatctgtgccatttagagcagaaaccaatggatacccacatttagattgcaatggcagtacttcaGgaaatctacctcAaaaaattccacctgataaccagcttccgttcaTtaattcttctaatccggtgatgtcactggttgggtttttggcttctgctatgggaccaagagttgcagcatcatgtgcaagtgctgctttatcagttttgacagtagatgatgattccagggtgaattcagaaggcatttgctctgattctaggggccaaggtccgcatccgaattttcgtgatcataatggtggtgtatcttcatCcatctctccagaaaaggtgaagcatgctgccatgtgtggtttgtcggcagcagctacgaaggctaaactttttgcagatcaagaggaacgtgaaatccaaagactaactgctactgtaataaaccatcaGttAaaaaggttggaactgaagctgaagcagtttgccgaagtcgagaccttgcttttgaaagaatgcgagcaagtggagagaataaggcagaggattgcatctgaccgtgtccgaatcgtgtccacccgcttggcctcgcctggAaatagcctacctgggggtagtactagcaccatgtcatccaatccaatgagTatgagccccagaccgatGggcgtgccaggctcgatgcctcaatccagtatgccagcaccatttgccaataacatgcaggggcatggtcacccccagatggcattcttacaacagcagcagcggcagcagatgctgtcatttggacctcgtctgccgctgtcggccatccAaacccagccatccccacagacgtcaaacatcatgttcaacccaggcatgcccaattctgtaacccctaatcatcatcaactgttgaggtcgtcttctggaaacaattcaagtgtaggatag
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| Protein seq | MPRKASSTSDSRLKWRKWKRNPTASPSPSNRSSAAAAAADHSDDSDSAAVNEDDDSAVPEDADDETLAGAEDPVLDLREAEVLPSAEPVSAFPVATRRVVNRPHPSVLAVIAAERSACAGEGSAAVAAAPVLENISYGQQQVLSGVLPDHASLATDTDKPSTYVCTPPNLMEGHGVTKQFQGRLHVVPKHSDWFSPGIVHRLERQVVPQFFSGKSPGNTPQKYMLLRNKVIAKYLENPSKRLAFAECQGLVANTAELYDLSRIVRFLDTWGIINYLASGSVHRGLRMATSLLREEPTGELQLLTAPLKSIDGLILFDRPKCNLQAEDISSLASNSEVVDFDAGLAELDGKIRERLSESSCSYCLQPLTSLHYQSLKEADIALCSDCFHDARYITGHSSLDFQRIDGDNDRSENDGDSWTDQETLLLLEGIEKYNDNWNNIAEHVGTKSKAQCIYHFIRLPVEDGLLENIEVPDASVPFRAETNGYPHLDCNGSTSGNLPQKIPPDNQLPFINSSNPVMSLVGFLASAMGPRVAASCASAALSVLTVDDDSRVNSEGICSDSRGQGPHPNFRDHNGGVSSSISPEKVKHAAMCGLSAAATKAKLFADQEEREIQRLTATVINHQLKRLELKLKQFAEVETLLLKECEQVERIRQRIASDRVRIVSTRLASPGNSLPGGSTSTMSSNPMSMSPRPMGVPGSMPQSSMPAPFANNMQGHGHPQMAFLQQQQRQQMLSFGPRLPLSAIQTQPSPQTSNIMFNPGMPNSVTPNHHQLLRSSSGNNSSVG
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| Event Type | Chromosome | Start | End | Strand | Alternative mRNAs | Total mRNAs | Source |
| A3 | Chr11 | 4192654 | 4192785 | + | OsNaBo_11g0005340.01 | OsNaBo_11g0005340.01,OsNaBo_11g0005340.02 | All |
Expression
| Leaf | Root | Panicle | |
| FPKM | 1.796209 | 19.505859 | 7.958570 |
Homologues
| Genome & Annotation | Homologs | Type | Expression(FPKM) | ||
|---|---|---|---|---|---|
| Leaf | Root | Panicle | |||
| Nipponbare | IRGSP 1.0 | Gramene(+IsoSeq) | OsNip_11g0183700 | RBH | 3.400943 | 4.631687 | 10.870774 |
| Nipponbare | IRGSP 1.0 | MSU | LOC_Os11g08080 | RBH | 2.265838 | 1.929179 | 1.907548 |
| Nipponbare | IRGSP 1.0 | RAP-db | Os11g0183700 | RBH | None | None | None |
| Azucena | AzucenaRS1 | Gramene(+IsoSeq) | OsAzu_11g0005510 | RBH | 1.247314 | 14.071493 | 8.421582 |
| KETAN NANGKA | Os128077RS1 | Gramene(+IsoSeq) | OsKeNa_11g0005480 | RBH | 0.550488 | 3.147700 | 4.393509 |
| CHAO MEO | Os132278RS1 | Gramene(+IsoSeq) | OsCMeo_11g0005520 | RBH | 1.904474 | 12.639018 | 10.936642 |
| ARC 10497 | Os117425RS1 | Gramene(+IsoSeq) | OsARC_11g0005410 | RBH | 0.365273 | 0.522542 | None |
| PR 106 | Os127742RS1 | Gramene(+IsoSeq) | OsPr106_11g0005350 | RBH | 12.265910 | 18.336168 | 14.191726 |
| Minghui 63 | MH63RS3 | HZAU | OsMH63_11G0070900 | RBH | 12.448492 | 16.46436 | 15.547965 |
| IR 64 | OsIR64RS1 | Gramene(+IsoSeq) | OsIR64_11g0005410 | RBH | 0.471637 | 0.584909 | 1.334257 |
| Zhenshan 97 | ZS97RS3 | HZAU | OsZS97_11G0071300 | RBH | 14.609081 | 17.332369 | 28.224885 |
| LIMA | Os127564RS1 | Gramene(+IsoSeq) | OsLima_11g0005370 | RBH | 0.263085 | 0.276568 | None |
| KHAO YAI GUANG | Os127518RS1 | Gramene(+IsoSeq) | OsKYG_11g0005410 | RBH | 0.978654 | 0.0 | None |
| GOBOL SAIL | Os132424RS1 | Gramene(+IsoSeq) | OsGoSa_11g0005450 | RBH | 10.877829 | 26.032368 | None |
| LIU XU | Os125827RS1 | Gramene(+IsoSeq) | OsLiXu_11g0005440 | RBH | 0.834627 | 0.0 | 1.157531 |
| LARHA MUGAD | Os125619RS1 | Gramene(+IsoSeq) | OsLaMu_11g0005430 | RBH | 0.763536 | 5.495848 | None |
| N22 | OsN22RS2 | Gramene(+IsoSeq) | OsN22_11G005510 | RBH | 0.474507 | 4.012715 | 3.001239 |
| NATEL BORO | Os127652RS1 | Gramene(+IsoSeq) | OsNaBo_12g0005270 | RBH | 0.757233 | 13.996418 | 7.418592 |
